Marker-assisted selection for forelimb-girdle muscular anomaly of Japanese Black cattle

Forelimb‐girdle muscular anomaly is a hereditary disorder of Japanese Black cattle characterized by tremors and astasia caused by hypoplasia of the forelimb‐girdle muscles. The locus responsible for this disorder has been mapped on a middle region of bovine chromosome 26. In this study, we applied marker‐assisted selection to identify the carriers of this disorder. Four microsatellite markers, DIK4440, BM4505, MOK2602 and IDVGA‐59, linked to the disorder locus were genotyped in 37 unaffected offspring of a carrier sire. Transmission of the mutant or wild‐type allele of the disorder locus of the sire to the 37 offspring was determined by examining the haplotypes of these markers. The results showed that nine and 18 of the 37 animals possessed the paternally transmitted mutant and wild‐type alleles, respectively, and therefore, the nine animals with the mutant allele were identified as carriers. We concluded that the marker‐assisted selection using these four markers can be applied for the identification of the carriers of forelimb‐girdle muscular anomaly of Japanese Black cattle.     

Frequencies of bovine PrP gene polymorphisms in Holstein and Japanese Black bulls in Japan

We screened for Japanese Black and Holstein bull sire samples to detect single nucleotide polymorphisms (SNPs) involving animo‐acid substitutions in the bovine prion gene in the entire coding region of the PRNP gene. Although three silent SNPs were found, we could not detect any SNP with animo‐acid substitution. We also examined the polymorphism of the octapeptide repeat number in these samples. There was no homozygous bull with repeat number 5. The frequency of heterozygous (6/5) bulls was 8% in the Japanese Black bull and 4% in the Holstein bull, respectively. The bull samples used in this study contain popular elite sires, so it appears that the polymorphisms of prion protein (PrP) are rather difficult to find in these two breeds in Japan, except for polymorphism of the octapeptide repeat number.     

A novel waxy allele in sorghum landraces in East Asia

A loss of granule‐bound starch synthase I (GBSS I) activity results in starch granules that contain mostly amylopectin and little or no amylose, a phenotype described as waxy. Previously, two phenotypic classes of waxy alleles, wx^a, associated with no detectable GBSS I, and wx^b, associated with apparently inactive GBSS I in the endosperm, were reported in sorghum (Sorghum bicolor (L.) Moench). In this study, the waxy alleles in a sorghum core collection were investigated using DNA markers. Of the 337 sorghum accessions examined, 17 accessions that were confirmed to be waxy by a negative iodine staining result and 16 were found to be wx^a. A novel waxy allele, wx^c, was found in a Taiwanese landrace. This allele consists of a +1G to C mutation in the 5′ splice site at the intron 10–exon 11 boundary, a mutation that most likely resulted in the suppression of GBSS I gene expression. A DNA marker specific for wx^c was produced to distinguish the wx^c allele from other alleles, allowing the identification of heterozygous non‐waxy plants.     

Food preservative potential of gassericin A‐containing concentrate prepared from cheese whey culture supernatant of Lactobacillus gasseri LA39

Gassericin A (GA) is a circular bacteriocin produced by Lactobacillus gasseri LA39. In this study, GA‐containing concentrate was prepared using a cross‐flow membrane filtration device (30 kDa cut‐off) from the culture supernatant of Lb. gasseri LA39 cultivated in a cheese whey‐based food‐grade medium. The bacteriocin activity titer in the concentrate was 16 times as high as that of the culture supernatant and was completely maintained through each incubation at 4°C for 3 months, 37°C for 2 months, 60°C for 5 h, and 100°C for 30 min. The GA‐containing concentrate was used with glycine powder to make custard creams, and then four representative strains of custard cream spoilage bacteria (Bacillus cereus, Lactococcus lactis subsp. lactis, Achromobacter denitrificans and Pseudomonas fluorescens) were individually inoculated at c. 10³ colony forming units/g in the custard creams. Throughout 30 days of incubation at 30°C, all of the inoculated bacteria were completely inhibited by the combination of 5% (w/w) of the GA‐containing concentrate and 0.5% (w/w) glycine. This is the first highly practical application of GA to foods as a biopreservative, and the concentration method and the bacteriocin concentrate would contribute to biopreservation of several foods.     

On the mechanical interaction between cellulose microfibrils and matrix substances in wood cell walls: effects of chemical pretreatment and subsequent repeated dry-and-wet treatment

We investigated the influences of chemical pretreatments and subsequent repeated dry-and-wet (RDW) treatments on the mechanical linkage between cellulose microfibrils (CMFs) and matrix substances (MT) in wood cell wall. Sugi (Cryptomeria japonica D. Don) quarter-sawn specimens were subjected to various types of chemical pretreatments, including ethanol and benzene extraction, delignification, alkali extraction, and hygrothermal treatment, to give substantial damages to principal constituents of wood cell wall, followed by 5 times of RDW treatment. After giving chemical pretreatment, the d-spacing of (200) lattice plane of cellulose I_β (d ₂₀₀), the crystallinity of wood cell wall, and the crystal size of the cellulose were measured at the fiber saturated point, using X-ray diffraction techniques. Thereafter, these were measured again at the absolutely dried condition in the process of subsequent RDW treatments. The d ₂₀₀ in specimens, which were given to light pretreatments, largely expanded by drying at the early stages of RDW treatments, then it decreased and became constant after 5 times of RDW treatments. On the other hand, d ₂₀₀ in specimens, which were given to intensive pretreatments, remained constant at a relatively small level throughout the whole process of RDW treatments. After 5 times of RDW treatments, d ₂₀₀ became similar values between the above two groups. This suggests that RDW treatments have similar effects as intensive pretreatments, which induce substantial damages to the microscopic region in the wood cell wall such as interfacial separation between CMF, MT, and so forth. These defects would weaken mechanical interaction between CMF and MT in the wood cell wall during drying.     

Thinning effect on height and radial growth of Pinus thunbergii Parlat. trees with special reference to trunk slenderness in a matured coastal forest in Hokkaido, Japan

To evaluate the effect of thinning on a mature coastal Pinus thunbergii Parlat. forest in Hokkaido, northern Japan, we established four study plots with different thinning intensities (control and 20, 40, and 60 % thinned at individual base; each 20 m × 20 m) and monitored them for 10 years. Radial growth of individual trees in the 60 % thinned plot was significantly greater than that in the other plots, whereas height growth in the 60 % thinned plot was significantly lower than in the other plots. Applying the height growth contribution index, which represents the trade-off between relative height growth rate and relative diameter growth rate, revealed that individual trees in the control and weakly (20 and 40 %) thinned plots had invested more in height growth compared to trees in the 60 % thinned plot. Though higher trunk slenderness value (>80) indicates higher susceptibility to meteorological disturbance such as wind storm and heavy snow, trunk slenderness in the control and the weakly thinned plots increased significantly compared to that in the 60 % thinned plot. In this study, 44.3 % of trees in the control plot had trunk slenderness values >80 over a period of 10 years. The number of trees with trunk slenderness values >80 also increased in the weakly thinned plots. In contrast, no increase was observed in the 60 % thinned plot. In Japan, the thinning intensity is legally supposed to be <35 % of stand volume, which is not enough to improve tree architecture in terms of trunk slenderness.     

Differentiation of feline coronavirus type I and II infections by virus neutralization test

Feline coronavirus (FCoV) is divided into two types I and II, based on their growth in vitro and antigenicity. In this study, virus neutralization (VN) test was applied for type differentiation of FCoV infections. Sera of cats which were clinically and serologically diagnosed as feline infectious peritonitis (FIP) possessed significantly higher VN titers to type I FCoV, and sera from cats experimentally infected with FIPV type II had high VN titers to type II but not type I viruses. A total of 79 cat sera collected in the years between 2004 and 2005 were examined to evaluate seroprevalence by the VN test, showing the following results: (1) 50 cats (63.3%) were sero-positive to FCoV; (2) of the 50 FCoV positive cat serum samples, 49 (98%) showed significantly higher titers to type I virus and only one (2%) for type II virus. These results indicate that the VN test described here can be used for serological differentiation of FCoV infections of cats, and that FCoV type I is a dominant type in recent years of Japan.     

Clinical and molecular analysis of GM2 gangliosidosis in two apparent littermate kittens of the Japanese domestic cat

This case report documents clinical and molecular findings in two littermate kittens of the Japanese domestic cat with GM2 gangliosidosis variant 0. Analysis included detailed physical, magnetic resonance imaging, biochemical, pathological and genetic examinations. At first, these littermate kittens showed typical cerebellar signs at approximately 2 months of age. About 2 months later, they progressively showed other neurological signs and subsequently died at about 7 months of age. Magnetic resonance imaging just before the death showed an enlarged ventricular system, T1 hyperintensity in the internal capsule, and T2 hyperintensity in the white matter of the whole brain. Histological findings suggested a type of lysosomal storage disease. Biochemical studies demonstrated that the kittens were affected with GM2 gangliosidosis variant 0, and a DNA assay finally demonstrated that these animals were homozygous for the mutation, which the authors had identified in a different family of the Japanese domestic cat. The findings in the present cases provide useful information about GM2 gangliosidosis variant 0 in Japanese domestic cats.     

Associations between Japanese spotted fever (JSF) cases and wildlife distribution on the Boso Peninsula,Central Japan (2006–2017)

Populations of large mammals have been dramatically increasing in Japan, resulting in damage to agriculture, forestry, and ecosystems. However, their effects on tick-borne diseases have been poorly studied. Here, we focused on the relationship between Japanese spotted fever (JSF), a tick-borne disease caused by Rickettsia japonica, and populations of large mammals. To explore factors that affected the area in which JSF cases occur, we used generalized linear mixed models (GLMMs). We demonstrated that the expansion of the area of JSF occurrence can be predicted by deer density and geographical factors, which is likely due to differences in landscape structure. However, the associated models have limitations because of the lack of information about the distribution of vectors and reservoirs. To reduce the risk of humans contracting JSF, potential reservoirs should be confirmed.