Effect of sodium acetate on the adhesion to porcine gastric mucin in a Lactococcus lactis strain grown on fructose

The association of lactic acid bacteria with mucosal surfaces plays important roles in the beneficial effects of these bacteria on human health, such as colonization of the gastrointestinal tract for pathogen antagonism. Previously, we found that the adhesion of Lactococcus lactis 7‐1 to porcine gastric mucin was higher with fructose than with lactose, galactose or xylose as the carbon source. In this study, we examined the effect of growth conditions on the adhesion of strain 7‐1 grown on fructose. Medium components affect the adhesion: the adhesion of strain 7‐1 grown with sodium acetate was higher than that without it. The enhancement of adhesion by sodium acetate was not observed under aerobic conditions. Cellular properties grown with or without sodium acetate were characterized: strain 7‐1 grown with sodium acetate had similar sugar contents, and different fatty acid composition to those grown without it. Strain 7‐1 grown with sodium acetate showed significantly lower cell yield and significantly higher hydrophobicity than those grown without it, which is associated with higher adhesion. Fructose and sodium acetate are frequently used in the food industry; this study may reveal a simple way to enhance the adhesion of lactic acid bacteria by growing them with these substances.     

Effect of a single polymorphism in the Japanese quail NK‐lysin gene on antimicrobial activity

NK‐lysins are cationic peptides that play important roles in host protection, and are an important constituent of innate immunity. We identified nine single‐nucleotide polymorphisms (SNPs) in the NK‐lysin open reading frame (ORF) from 32 Japanese quails in six strains: A, B, ND, K, P, and Y. The G to A substitution at nucleotide position 272 in the ORF resulted in a Gly (G) to Asp (D) amino acid substitution (Cj31G and Cj31D alleles). The Cj31D allele was detected in P (frequency 0.76) and Y (frequency 0.03) strains. We compared the antimicrobial activities of four synthetic peptides from the helix 2‐loop‐helix 3 region of avian NK‐lysins against Escherichia coli: Cj31G and Cj31D from quail and Gg29N and Gg29D from chicken. The antimicrobial activities of the four peptides decreased in the following order: Gg29N > Cj31G > Gg29D > Cj31D (P < 0.05). Although there were no differences in the predicted secondary structure of the Cj31G and Cj31D, the net charge of the Cj31G was higher than that of Cj31D. These data indicated that the antimicrobial activity of CjNKL is influenced by net charge, similar to that which has been observed in chicken. © 2015 Japanese Society of Animal Science     

Practical Application of Miyazaki Jitokko Chickens Selected for a Superior Allele at a Single Nucleotide Polymorphism Site in the Cholecystokinin Type A Receptor Gene

This study aimed to examine 1) whether selection for a superior allele at a single nucleotide polymorphism site (SNP; {"type":"entrez-nucleotide","attrs":{"text":"AB604331","term_id":"315258605","term_text":"AB604331"}}AB604331, g.420 C>A) of the chicken cholecystokinin type A receptor (CCKAR) gene in Miyazaki Jitokko chickens is detectable in commercial poultry farms, and 2) whether the reproductive traits of the Kyushu Rhode hens, as a maternal stock line of the Miyazaki Jitokko chickens, are affected by SNP selection. Conventional and A-allele fixed (improved) Miyazaki Jitokko chicks were hatched on the same day and raised in a battery cage until 7 days of age. The chicks were then deposited at two commercial poultry farms and reared until slaughter at 126 and 163 days for cockerels and pullets, respectively. Body weight on the day of hatching (day 0), at 5 days of age, and at slaughter were measured. The differences in the body weights of the farm and test groups at slaughter were analyzed using the generalized linear model. A-allele fixation increased the body weight at slaughter by approximately +123.5 g and +131.9 g in cockerels and pullets, respectively. No significant differences between the conventional and improved hens were detected in terms of egg-laying rate, fertilization rate, and hatchability in the Kyushu Rhode hens. The data suggest that fattening chicks can be supplied as usual, even if Kyushu Rhode hens are switched from the conventional to improved type. In conclusion, genetic improvements using the CCKAR SNP site as a marker were effectively established in terms of the growth of the Miyazaki Jitokko chickens in commercial farms and the reproductive traits of the Kyushu Rhode hens.     

The role of different sources of tree regeneration in the initial stages of natural forest recovery after logging of conifer plantation in a warm-temperate region

We analyzed the role of regeneration type (surviving from advanced regeneration, resprouting from advanced regeneration, or newly recruited seedlings) in determining the quantity and quality of individuals in reestablishing a natural forest following clear-cutting of a conifer plantation. We experimentally clear-cut a plantation and undertook a detailed tree census before and after clear-cutting. After clear-cutting, a species composition partially representing warm-temperate evergreen broadleaf forest was present in the form of surviving and resprouted individuals originating from advanced regeneration that had established in the Chamaecyparis obtusa plantation. On the other hand, seedlings that established after clear-cutting were dominated by pioneer species, and the number of seedlings was far greater than the number of individuals originating from advanced regeneration. Our results suggest that the role of regeneration type would differ in relation to the objectives for forest recovery. When any kind of woody cover of the ground surface after clear-cutting would suffice, we suggest that the contribution of pioneer seedlings originating from buried seeds would be important. If the recovery objective is to form a simple evergreen broadleaf forest, such as a coppice woodland, all three sources of regeneration would play a similar role, provided the understory before clear-cutting was as well developed as the one in this study. If rapid establishment of a lucidophyllous forest with diverse species composition is desired, the role of the surviving and resprouting individuals originating from the advanced regeneration would be much more important.     

Relationship between production of hydroxyl radicals and degradation of wood, crystalline cellulose, and a lignin-related compound or accumulation of oxalic acid in cultures of brown-rot fungi

The degradation of wood, filter paper cellulose, and a lignin-substructure model, was measured in cultures of seven fungi usually regarded as brown-rot fungi. Hydroxyl radical production and the accumulation of oxalic acid in the cultures were also measured. Four of the fungi, Gloeophyllum trabeum, Tyromyces palustris, Laetiporus sulphureus, and Postia placenta, were typical brown-rot fungi, in that they preferentially degraded and eliminated the polysaccharides in wood and produced large amounts of hydroxyl radical. The rates of hydroxyl radical generation in cultures of the four fungi were directly proportional to the degradation rates of wood, cellulose, and the lignin-related compound, and inversely proportional to the amount of oxalic acid in the cultures. Two of the fungi, Daedalea dickinsii and Lentinus lepideus, did not degrade any of the substrates significantly and produced very little hydroxyl radical. Coniophora puteana had the highest rate of cellulose degradation, but did not degrade wood or the lignin model significantly and produced only negligible amounts of hydroxyl radical. These results indicate that brown-rot fungi produce large amounts of hydroxyl radical for the degradation of wood and crystalline cellulose.     

Factors affecting the dynamics of the population of Fagus crenata in the Takakuma Mountains, the southern limit of its distribution area

The refugee population of Fagus crenata in the Takakuma Mountains, Kyushu, Japan, represents the southern limit of this species' distribution area. Because this population is the most exposed to the global warming effect, records of this population are likely to provide useful information on the response of this species to global warming. The aim of this study was to record the present status of this valuable population, enabling judgment of its sustainability. The density of successive F. crenata trees and saplings was low regardless of the coverage of dwarf bamboo. Moreover, the proportion of empty nuts observed was considerably high, suggesting to be the likely major factor limiting recruitment of saplings or successors in this population. Radial growth of F. crenata was shown to have been decreasing for the past 50 years, and there was a significantly negative correlation with the warmth index. The decreasing growth rate and poor regenerative ability caused by the high proportion of empty nuts suggest the possibility that this population will degrade further in the future, possibly being replaced by shrubs and small tree species.     

Nitrogen use by <Emphasis Type="Italic">Pinus densiflora</Emphasis> trees growing on a Mt. Fuji lava flow

To quantify the nitrogen (N) use by Pinus densiflora trees growing on an infertile lava surface, N pools, N requirement and N uptake through fine roots and N deposition from the atmosphere were estimated. The N requirement and the N uptake of fine roots were 55.5kgNha^–1year^–1 and 39.7kgNha^–1, respectively. Thus, the ratio of N uptake to N requirement of the fine roots was 71.5%. Including fine-root contribution, the total N requirement of the P. densiflora trees was 98.6kgNha^–1year^–1, and the total N uptake was 64.2kgNha^–1year^–1. Thus, the N uptake of the P. densiflora trees was 64.1% of the N requirement, indicating that P. densiflora trees growing on an infertile lava surface obtain some of their N from below-ground organic material layers every year and the contribution of N storage in trees for their growth is not any higher than indicated in previous reports that excluded fine-roots contribution. The wet N deposition of our research forest was only 5.8% of the N requirement of the P. densiflora trees and only 8.9% of the N uptake. Movement of the below-ground organic material layer N concentrations in the F- and L-layers coincides with needle development and fine-root growth, suggesting the possibility that P. densiflora trees extract N from the organic N of those layers for growth.     

Effects of topography and management history on natural forest recovery in abandoned forest after clear-cutting in Miyazaki, Japan

We investigated factors limiting the recovery of natural forest in former large-scale conifer plantations abandoned after clear-cutting in southwestern Japan. We analyzed forest recovery status (“recovered” sites covered by evergreen broad-leaved trees, and “unrecovered” sites covered by pioneer community or nonvegetated sites) using aerial photographs and field survey. We applied logistic regression analyses to evaluate the effects of topography, construction of harvesting roads, distance from remnant forest, stand condition before clear-cutting, and prior land-use history on forest recovery. Human factors, i.e., land use and clear-cutting age, were found to affect to forest recovery more than environmental factors such as topography. Harvesting roads had the strongest negative impact on forest recovery. Forest recovery after clear-cutting of young sugi plantations also took longer than after clear-cutting of old sugi plantations or evergreen broad-leaved forests. Furthermore, areas formerly utilized as meadows recovered less successfully than those that had been managed as coppices. The influences of these factors were thought to be promoted by the advance reproduction as the regeneration sources for forest recovery. The influence of stand age before logging suggested an effect of thinning, which might alter the abundance of advanced reproduction in the understory. However, distance from remnant forest appeared to be less important. An influence of topography was also detected, but this could be partly explained by the existence of advance reproduction in the understory in certain topographic positions. Thus, our analysis suggests that regeneration sources originating from advanced reproduction in plantations play a significant role for the recovery of natural forest after clear-cutting.     

Identifying causes of death of companion dogs in Japan using data from pet cemeteries

This study aimed to identify the causes of death in dogs that were buried at pet cemeteries. Using data obtained from a questionnaire completed by 5,118 dog owners from 1 April 2016 to 31 March 2017, we estimated the life expectancy and the odds ratio for principal causes of death using multiple logistic regression analysis with potential risk factors as independent variables. The life expectancy determined at birth was 13.98 years. The commonest cause of death was senility. The odds ratios of dying of senility being significantly higher in Labrador Retrievers and Shiba breeds and aged dogs, and significantly lower in Chihuahuas, dogs living indoors and neutered dogs.     

Phylogenetic relationship of Pasteurella pneumotropica isolates from laboratory rodents based on 16S rDNA sequence

A 1344 bp fragment of the 16S ribosomal DNA (rDNA) sequence was used to determine the genetic relationship of Pasteurella pneumotropica isolates from laboratory rodents. A total of 30 nucleotide sequences of P. pneumotropica, including 24 wild strains, 3 reference strains, and 3 nucleotide sequences deposited in GenBank, were examined for heterogeneity of their 16S rDNA sequences. Phylogenetic analysis based on 16S rDNA sequence discriminated 5 types of branching lineages. Of these 5 types, 3 types had significant associations with mice or rats, and 2 had significant associations with the beta-hemolytic phenotype. These results suggest that 16S rDNA sequencing of P. pneumotropica isolates demonstrates genetic heterogeneity and phylogenetic discrimination in terms of their hemolytic phenotype and host associations.