Statistical methods for detecting and comparing periodic data and their application to the nycthemeral rhythm of bodily harm: A population based study

Background  

Animals, including humans, exhibit a variety of biological rhythms. This article describes a method for the detection and simultaneous comparison of multiple nycthemeral rhythms.     

Pleuritis in slaughter pigs: Relations between lung lesions and bacteriology in 10 herds with high pleuritis

Pleuritis in slaughter pigs has increased in recent years in the Netherlands. The aim of the present study was to determine what respiratory pathogens were involved in pleuritis.In total, lungs of 968 slaughter pigs from 10 herds with high prevalence of pleuritis were morphologically examined for size, location, and type of lesions. Moreover, histology and bacteriology were performed.Examination of gross lung lesions showed 45% pleuritis, 14% pleuropneumonia and 38% catarrhal pneumonia. Peribronchiolar cuffing was found in 61 of 142 samples. Actinobacillus pleuropneumoniae was cultured from 22 lung samples from four herds. Pasteurella multocida was cultured from 55 lung samples in eight herds. No specific pattern with respect to the causal pathogens was found.In conclusion, no single infectious cause of pleuritis was found. A variety of infectious agents combined with environmental factors should be considered as a cause of pleuritis.     

Qualitative aspects in the analysis of pesticide residues in fruits and vegetables using fast, low-pressure gas chromatography-time-of-flight mass spectrometry

Quantitative method validation is a well-established process to demonstrate trueness and precision of the results with a given method. However, an assessment of qualitative results is also an important need to estimate selectivity and devise criteria for chemical identification when using the method, particularly for mass spectrometric analysis. For multianalyte analysis, automatic instrument software is commonly used to make initial qualitative identifications of the target analytes by comparison of their mass spectra against a database library. Especially at low residue levels in complex matrices, manual checking of results is typically needed to correct the peak assignments and integration errors, which is very time-consuming. Low-pressure gas chromatography-mass spectrometry (LP-GC-MS) has been demonstrated to increase the speed of analysis for GC-amenable residues in various foods and provide more advantages over the traditional GC-MS approach. LP-GC-MS on a time-of-flight (ToF) instrument was used, which provided high sample throughput with <10 min analysis time. The method had already been validated to be acceptable quantitatively for nearly 150 pesticides, and in this study of qualitative performance, 90 samples in total of strawberry, tomato, potato, orange, and lettuce extracts from the QuEChERS sample preparation approach were analyzed. The extracts were randomly spiked with different pesticides at different levels, both unknown to the analyst, in the different matrices. Automated software evaluation was compared with human assessments in terms of false-positive and -negative results. Among the 13590 possible permutations with 696 blind additions made, the automated software approach yielded 1.2% false presumptive positives with 23% false negatives, whereas the analyst achieved 0.8% false presumptive positives and 17% false negatives for the same analytical data files. False negatives frequently occurred due to challenges at the lowest concentrations, but 70% of them involved certain pesticides that degraded (e.g., captafol, folpet) or otherwise could not be detected. The false-negative rate was reduced to 5-10% if the problematic analytes were excluded. Despite its somewhat better performance in this study, the analyst approach was extremely time-consuming and would not be practical in high sample throughput applications for so many analytes in complicated matrices.     

Effect of saccharide structure and size on the degree of substitution and product dispersity of α-lactalbumin glycated via the Maillard reaction

The course of the Maillard reaction between α-lactalbumin and various mono- and oligosaccharides in the solid state was studied using UPLC-ESI-TOF-MS. Individual reaction products were monitored for their degree of substitution per protein molecule (DSP). The Maillard reaction rate depended on the saccharide type and decreased when the saccharide size increased. Conjugation with charged saccharides was hindered when a specific average DSP was reached, probably resulting from electrostatic repulsion. The DSP varied between 0 and 15, and the standard deviation of the average DSP, which is a measure for product dispersity, increased to 1.9. Similar experiments were performed with a dipeptide. Relative reaction rates in these experiments were 1 for glucose, 0.28 for maltose, and 0.16 for maltotriose. Comparison of the results obtained using α-lactalbumin and the dipeptide made clear that the Maillard reaction rate is determined by a number of factors, including saccharide reactivity and lysine accessibility.     

Recent human‐induced salinity changes in Ramsar‐listed Orielton Lagoon,south‐east Tasmania,Australia: a new approach for coastal lagoon conservation and management

• 1. Many coastal lagoons in eastern Australia have changed as a result of recent human activities. However, it is often difficult to determine the extent of change and the ecological implications. A palaeoecological approach allows a quantitative assessment of how an aquatic ecosystem changes and responds to human impacts beyond what is possible with historical data or monitoring programmes.
• 2. Orielton Lagoon (south‐east Tasmania, Australia) is a Ramsar‐listed coastal wetland of international importance for conservation. This study was undertaken at the site to determine whether recent anthropogenic hydrological modifications to the lagoon had influenced its ecology, particularly salinity, and compromised its Ramsar status.
• 3. A diatom–salinity transfer function was constructed from a training data set of 96 diatom taxa from 34 sampling sites in 19 lagoons along the east coast of Tasmania.
• 4. The salinity of Orielton Lagoon has changed in response to a causeway constructed across its mouth, which has transformed the lagoon from an open marine environment to an enclosed, virtually stagnant, brackish water body.
• 5. These changes have compromised the protected coastal wetland status of Orielton Lagoon. Environmental remediation attempts have since partially restored the natural hydrology of the lagoon and it is now returning towards the state it was in prior to causeway construction.
• 6. A palaeoecological approach using diatoms was found to be successful in reconstructing recent salinity changes and investigating human impacts on Orielton Lagoon over the last 50–55 years.

Copyright © 2006 John Wiley & Sons, Ltd.     

Comparative morphology of esophageal mucosa and submucosa in dogs from 1 to 337 days of age

Scanning electron microscopy, light microscopy, and morphometric analyses were used to examine the morphology of the tunica mucosa-tela submucosa of the cervical, thoracic, and abdominal parts of the esophagus of healthy dogs from birth to 337 days of age from 3 litters of dogs whelped and reared under controlled conditions. Apart from the absence of a lamina muscularis mucosae from the cervical part of the esophagus of all dogs examined, little regional variation was detected. However, morphologic variation associated with age was observed. The number and complexity of microplicae on surface epithelial cells, as observed with the scanning electron microscope, increased with age, particularly between 1-day-old and 21-day-old dogs. Although scanning electron microscopy revealed typical duct openings from the submucosal glands in 1-day-old dogs, light microscopy revealed few functional glands. These glands gradually developed into a complex strata of tubules and acini during the time that secretory activity and the volume fraction of the tunica mucosa-tela submucosa occupied by glands increased with age. The presence of ciliated cells in the esophagus of 1-day-old dogs was apparent with scanning electron and light microscopes. Ciliated cells were always most abundant in the abdominal part of the esophagus. Finally, morphometric analyses revealed a significant increase in epithelial and connective tissue compartment thicknesses, as well as a marked increase in the volume fraction occupied by glands between 1 day and 161 days after dogs were whelped. A smaller decrease in all 3 measures occurred between 161 and 337 days after the dogs were whelped.     

Targets for pathology research in protected crops

Due to the need to diminish the amount of pesticides used, alternative ways of controlling fungal diseases have to be developed. Foliar diseases have been managed mainly by chemicals, but research has been started to develop integrated control programmes. Data from studies on epidemiology, in combination with nutritional and climatic management and use of partial resistant cultivars will lead to a reduced use of chemicals. Models used are: Botrytis cinerea in gerbera and roses, and powdery mildew in roses and cucumbers. Research has been intensified on biological control of these pathogens. In closed systems, with recirculation of the nutrient solution, soil-borne fungi can cause serious problems. Not only do diseases known from traditional cultural systems, like fusarium wilt of carnation, fusarium crown and root rot of tomato and Phytophthora and Pythium spp. in several crops occur, but also new problems like a new Phytophthora sp. and Gnomonia sp. in roses and a Cylindrocladium sp. in Spathiphyllum spp. To prevent introduction of pathogens in recirculation systems, emphasis is put on developing an integrated disease management programme by using disease-free planting material, disease-free irrigation water, strict hygienic measures, resistant cultivars, methods of disinfecting the nutrient solution and biological control. Research over the last 5–6 years has revealed good prospects for biological control, especially in closed systems with a limited amount of substrate. Wilt in carnation, caused by Fusarium oxysporum f.sp. dianthi can be prevented effectively by adding a non-pathogenic isolate of F. oxysporum and/or Pseudomonas spp. There are indications that non-pathogenic isolates of F. oxysporum are also effective against wilt disease in other crops. An isolate of Trichoderma harzianum appears to be very effective against fusarium crown and root rot of tomato. More applications of this, and other, biocontrol agents seem possible. However, translation of the results of research to practical application and registration is still very difficult.     

Amylopectin structure and crystallinity explains variation in digestion kinetics of starches across botanic sources in an in vitro pig model

Background: Starch is the main source of energy in commonly used pig diets.Besides effects related to the extent of starch digestion,also several effects related to variation in digestion rate have recently been demonstrated in non-ruminants.Different rates of starch digestion in animals and in in vitro models have been reported,depending on the botanic origin of starch.Starches from different botanic sources differ widely in structural and molecular properties.Predicting the effect of starch properties on in vitro digestion kinetics based on existing literature is hampered by incomplete characterization of the starches,or by a selective choice of starches from a limited number of botanic sources.This research aimed to analyse the relationships between starch properties and in vitro digestion kinetics of pure starches isolated from a broad range of botanic origins,which are used in non-ruminant diets or have a potential to be used in the future.Therefore we studied starch digestion kinetics of potato,pea,corn,rice,barley,and wheat starches,and analysed the granule diameter,number of pores,type and amount of crystalline structure,amylose content and amylopectin side-chain length of all starches.Results: Multivariate analysis revealed strong correlations among starch properties,leading us to conclude that effects of most starch characteristics are strongly interrelated.Across all analysed botanic sources,crystalline type and amylopectin chain length showed the strongest correlation with in vitro digestion kinetics.Increased percentages of A–type crystalline structure and amylopectin side chains of DP 6–24 both increased the rate of digestion.In addition,within,but not across,(clusters of) botanic sources,a decrease in amylose content and increase in number of pores correlated positively with digestion kinetics.Conclusion: The type of crystalline structure and amylopectin chain length distribution of starch correlate significantly with digestion kinetics of starches across botanic sources in an in vitro pig model.Variation in digestion kinetics across botanic sources is not additively explained by other starch properties measured,but appears to be confined within botanical sources.     

Virulence-associated gene profiling of Streptococcus suis isolates by PCR

Definition of virulent Streptococcus suis strains is controversial. One successful approach for identification of virulent European strains is differentiation of capsular serotypes (or the corresponding cps types) and subsequent detection of virulence-associated factors, namely the extracellular factor (EF, epf), the muramidase-released protein (MRP, mrp) and the hemolysin suilysin (SLY, sly). In this work we present a novel multiplex PCR (MP-PCR) and an mrp variant PCR for identification and characterization of virulent S. suis strains. These new methods were used to identify association of disease with particular profiles of virulence-associated genes. The MP-PCR allowed identification of S. suis through detection of the housekeeping gene gdh, differentiation of four cps types (1, 2, 7 and 9), and detection of epf, mrp, sly and arcA (arginine deiminase from S. suis). Furthermore, this study describes the first PCR assay for differentiation of at least six mrp variants. Expression of the corresponding size variants of MRP was shown for four of the six mrp variants, but was undetectable for the two larger mrp variants in the particular strains investigated. The results of this study suggest that cps7 strains are associated with pneumonia and that variation of mrp is very pronounced among these strains. Gene profiles of invasive, pneumonia and carrier S. suis isolates by combination of PCR assays allowed differentiation of 24 different genotypes among cps1, 2, 7 and 9 strains. Forty-five percent of the invasive S. suis diseases investigated in this study were caused by only two of these genotypes, namely cps2/mrp+/epf+/sly+ and cps9/mrp(*)/epf-/sly+. Thus, this study demonstrates for the first time a uniform profile of the particular virulence-associated genes for the vast majority of the investigated invasive cps9 strains.