The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility

Segmental duplications in the human genome are selectively enriched for genes involved in immunity, although the phenotypic consequences for host defense are unknown. We show that there are significant interindividual and interpopulation differences in the copy number of a segmental duplication encompassing the gene encoding CCL3L1 (MIP-1alphaP), a potent human immunodeficiency virus-1 (HIV-1)-suppressive chemokine and ligand for the HIV coreceptor CCR5. Possession of a CCL3L1 copy number lower than the population average is associated with markedly enhanced HIV/acquired immunodeficiency syndrome (AIDS) susceptibility. This susceptibility is even greater in individuals who also possess disease-accelerating CCR5 genotypes. This relationship between CCL3L1 dose and altered HIV/AIDS susceptibility points to a central role for CCL3L1 in HIV/AIDS pathogenesis and indicates that differences in the dose of immune response genes may constitute a genetic basis for variable responses to infectious diseases.     

The length‐times‐width proxy for leaf area of eelgrass:criteria for evaluating the representativeness of leaf‐width measurements

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Fisheries and conservation assessment of sharks in Pacific Panama

1. In Panama, shark fisheries were initially developed in the 1980s and progressively increased in production in the 1990s mainly due to the high demand for shark fins and meat from the international Asian market. Since then, and despite the exploitation rate (average 3,514 t year^–1) and endangered status of some species, shark fisheries have seldom been studied, and official statistics are general or incomplete and not suitable for the development of appropriate conservation and management strategies.
2. To understand the dynamics of shark fisheries in Panama, field surveys were conducted between 2007 and 2009 at several landing ports of small‐scale and industrial fisheries, at fish processing plants and on‐board fishing vessels in Pacific Panama, where most of the fishing vessels of the country operate.
3. In general, it was found that the artisanal and industrial fisheries of the Pacific coast of Panama regularly exploit at least 18 species of sharks, which are also being exploited by neighbouring countries in the eastern Pacific, suggesting the importance of coordinated conservation initiatives across the multiple jurisdictions. A large number of the individuals caught were immature, implying a certain level of impact on recruitment rates. This pattern was particularly evident in species such as Sphyrna lewini, for which immature individuals represented at least 99% and 63% of the total catch by small‐scale and industrial fisheries, respectively. Catch per unit of effort analyses showed that Carcharhinus and Sphyrna species were the most exploited (representing ~80% of the catches) by industrial fisheries in Panama between 2006 and 2009, suggesting that fishery management should provide special attention to these groups.
4. It is expected that the information presented here provides a baseline to develop new regulations, including the implementation of annual quotas and fishing seasons and the protection of nursery areas, for the long‐term sustainability and conservation of sharks in Panama.

     

Olmec pottery production and export in ancient Mexico determined through elemental analysis

The first Mesoamerican civilization, the Gulf Coast Olmec, is associated with hierarchical society, monumental art, and an internally consistent ideology, expressed in a distinct style and salient iconography. Whether the Olmec style arose in just one area or emerged from interactions among scattered contemporaneous societies remains controversial. Using elemental analysis, we determined the regional clay sources of 725 archaeological ceramic samples from across Mesoamerica. Exported Olmec-style ceramics originated from the San Lorenzo region of the Gulf Coast, supporting Olmec priority in the creation and spread of the first unified style and iconographic system in Mesoamerica.     

Effects of nitroethane and monensin on ruminal fluid fermentation characteristics and nitrocompound-metabolizing bacterial populations

Nitroethane is a potent inhibitor of ruminal CH 4 production, a digestive inefficiency resulting in the loss of 2-15% of a ruminant's gross energy intake and an important emission source of this greenhouse gas. To assess the effect of nitroethane on methanogenesis and characterize ruminal adaptation observed with low treatment doses to this inhibitor, ruminal microbes were cultured in vitro with supplements of water (controls), 4.5 and 9 mM nitroethane, and 0.09 mM monensin, with or without 9 mM nitroethane. All treatments decreased CH 4 production >78% compared to controls; however, differential effects of treatments were observed on CO 2, butyrate isobutyrate, and valerate production. Treatments did not affect H 2 accumulation or acetate and propionate production. Most probable numbers of nitrometabolizing bacteria were increased with 4.5 and 9 mM nitroethane compared to numbers recovered from controls or monensin-containing treatments, which may explain ruminal adaptation to lower nitroethane treatments.     

Seroprevalence of Toxoplasma gondii infection in sheep and alpacas (Llama pacos) in Chile.

Serum samples from 408 sheep from different regions of Chile and 447 alpacas (Llama pacos) from the north of the country were tested for Toxoplasma gondii antibodies. The indirect haemagglutination test (IHAT) was used in both species and the indirect immunofluorescence test (IIFT) was also used on the sheep samples in order to compare the performance of the tests in that species. In both tests, titers ≥1:16 were considered diagnostically significant. Sera from 49 sheep (12%) were positive to T. gondii antibodies by the IHAT. When using the IIFT, 114 sheep sera (28%) were positive. The different results obtained in sheep sera between the tests were significant (p<0.0001). No differences were observed between geographical locations or sex of the sampled sheep regarding serological detection of T. gondii antibodies in sheep. As expected, adult sheep showed higher T. gondii reactivity than young sheep (p=0.0008). The corrected prevalence of toxoplasmosis in alpaca was 16.3% (32 positive out of 447). The rather low prevalence in alpacas may be associated with their extensive management as well as the extreme climatic conditions of The Andes which apparently would not be favorable for the transmission of the parasite.     

Temporal changes of irrigation system performance: development and test for a ratio of similar priority approach

Performance evaluation of irrigation systems is a key issue in the field of irrigation system management. This paper presents a Ratio of Similar Priority (RSP) method for irrigation systems performance evaluation. The time series data from the Shi-jin Irrigation District in northern China is used to test the method. The results show that this RSP method can be used to identify the main temporal changes of irrigation system performance. It offers clear and quantified results in terms of irrigation system performance evaluation.     

Reduced soil respiration in gaps in logged lowland dipterocarp forests

We studied the effects of forest composition and structure, and related biotic and abiotic factors on soil respiration rates in a tropical logged forest in Malaysian Borneo. Forest stands were classified into gap, pioneer, non-pioneer and mixed (pioneer, non-pioneer and unclassified trees) based on the species composition of trees >10 cm diameter breast height. Soil respiration rates did not differ significantly between non-gap sites (1290 ± 210 mg CO₂ m⁻² h⁻¹) but were double those in gap sites (640 ± 130 mg CO₂ m⁻² h⁻¹). Post hoc analyses found that an increase in soil temperature and a decrease in litterfall and fine root biomass explained 72% of the difference between gap and non-gap sites. The significant decrease of soil respiration rates in gaps, irrespective of day or night time, suggests that autotrophic respiration may be an important contributor to total soil respiration in logged forests. We conclude that biosphere-atmosphere carbon exchange models in tropical systems should incorporate gap frequency and that future research in tropical forest should emphasize the contribution of autotrophic respiration to total soil respiration.     

Selection for Fungicide Resistance Within a Growing Season in Field Populations of Phytophthora infestans at the Center of Origin

ABSTRACT The central highlands of Mexico should provide an optimal testing ground for evaluating the potential threat of selection for resistance to fungicides in the population of Phytophthora infestans. We evaluated the hypotheses that exposure to the fungicides azoxystrobin, cymoxanil, dimethomorph, fluazinam, mancozeb, metalaxyl, and propamocarb hydrochloride would lead to (i) a shift in the sensitivity distributions (i.e., selection) and (ii) a lower genotypic diversity of the population. We compared populations from unsprayed plots with populations that had been exposed to several applications of each of the fungicides within a single field season. This study provides novel baseline data and shows that the Toluca valley P. infestans population has a wide range of sensitivities to the fungicides fluazinam, cymoxanil, dimethomorph, metalaxyl, and propamocarb. Directional selection toward resistance combined with a reduction in genetic diversity of the P. infestans population was observed only for the fungicide metalaxyl. The results obtained provide direct experimental support for continuing vigilance regarding further introductions of exotic strains of P. infestans into the United States.