Molecular characerization of the interaction between the fungal pathogen Cladosporium fulvum and tomato

The fungus Cladosprium fulvum is a biotrophic leaf pathogen of tomato. The fungus develops in the intercellular space without forming specialized feeding structures and does not affect the leaf tissue. The outcome of the C. fulvum-tomato interaction can be described by the gene-for-gene model. Failure of infection is expressed by a hypersensitive response. Two fungal proteins, ECP1 and ECP2, have been isolated and their corresponding genes have been cloned. In a compatible interaction including many physiological races ECP1 and ECP2 are highly produced and a role in pathogenicity is suggestive. The ecp1 gene shows some homology with tumor necrosis factor receptors (TNFRs) while the ecp2 gene shows no homology with sequences known in data bases. However, disruption of one of the two genes showed no reduced pathogenicity of the fungus. Two race-specific elicitors, AVR4 and AVR9, have been isolated and their corresponding genes have been cloned. The avirulence genes Avr4 and Avr9 are only present in C. fulvum avirulent on Cf-4 and Cf-9 cultivars, respectively. The expression of these two genes is, like the expression of the ecp genes, highly induced when the fungus grows in planta. Disruption of the Avr9 gene in wild type avirulent races leads to virulence on tomato genotypes carrying the complementary resistance gene Cf-9. A single base-pair change in the avirulence gene Avr4 leads to virulence on tomato genotypes carrying the Cf-4 resistance gene. Isolation, characterization and possible function of ECP1, ECP2, AVR4, and AVR9 will be discussed.     

Models for tetracycline in aquatic environments

The interactions of tetracycline with model clay adsorbents has been studied as a function of suspension pH, ionic strength, and adsorbate concentration. The model clay adsorbents were the Na, Ca, and dodecyltrimethylammonium forms of bentonite and a tannic acid covered bentonite. The adsorption isotherms were of the Langmuir type and the adsorption capacity decreases in the order tannic acid-clay > Ca-clay > Na-clay > dodecyltrimethylammonium-clay. The adsorption onto the clay substrates decreases as the ionic strength and pH increases.     

Fertilization of declining conifer stands in the Vosges and in the French Ardennes

Twenty fertilization experiments were set up in 1985 and 1986 in the Vosges mountains, using mostly calcareous or Mg fertilizers, in order to verify whether fertilization can attenuate defoliation and yellowing recently recorded in Silver fir and Norway spruce. In the Ardennes, a fertilization experiment set up in Norway spruce stands prior to the appearance of yellowing was assessed. In these areas, the total acid deposition is about 2 kg eq H⁺ ha⁻¹ yr⁻¹. Nitrogen deposition is much more important in the Ardennes (52 kg N ha⁻¹ yr⁻¹ in form of wet and dry deposition) than in the Vosges (16 kg N ha⁻¹ yr⁻¹). The results in the eight adult stands showed no uniform reaction to the treatments. Spontaneous improvement, further deterioration independently of the treatment, as well as a positive reaction to fertilization were observed. Additional N or P fertilization sometimes had a beneficial effect on Ca or Mg treatments. The selection of the stands with the best response turns out to be difficult, as the nutrient contents of needles alone seem not to be a satisfactory criterion for selection. Young plantations reacted positivley to the treatments. Soluble Mg fertilizer leads to an immediate response. Low solubility Ca-Mg fertilizers (Ca-Mg lime) did not produce reactions until three years after the application. In the Ardennes, in a 40 yr old spruce stand suffering from severe Mg deficiency, a Ca and Ca-phosphate fertilization applied 5 yr before yellowing appeared had positive effects on crown density, discoloration and wood production. Conversely, a single N fertilization in this experiment, as well as in a young plantation in the Vosges, had a marked negative effect on Mg nutrition, even at low levels.     

A simplified procedure for terminal restriction fragment length polymorphism analysis of the soil bacterial community to study the effects of pesticides on the soil microflora using 4,6-dinitroorthocresol as a test case

We have studied the structural effects of application to the soil of a potentially detrimental herbicide, 4,6-dinitroorthocresol (DNOC) by analysing amplified ribosomal DNA restriction analysis (ARDRA) and terminal restriction fragment length polymorphism (T-RFLP) signatures of 16S rDNA fragments of culturable bacterial communities isolated from diluted soil suspensions. This approach has the potential to reveal changes induced by stressing the soil microflora with DNOC. This paper shows that, whereas only few changes of the ARDRA and T-RFLP profiles result from ageing of the soil, treatment of the soil with DNOC induces major modifications of these profiles. Therefore, for the practical purpose of pesticide registration, ARDRA and T-RFLP analysis performed on the dominant culturable fraction of the soil bacteria, implemented using conventional gel electrophoresis, offers the means of a routine, simple and meaningful test for detecting some of the changes affecting the structure of the soil microflora in response to pesticide application.     

Mediation of poly(ADP-ribose) polymerase-1-dependent cell death by apoptosis-inducing factor

Poly(ADP-ribose) polymerase-1 (PARP-1) protects the genome by functioning in the DNA damage surveillance network. PARP-1 is also a mediator of cell death after ischemia-reperfusion injury, glutamate excitotoxicity, and various inflammatory processes. We show that PARP-1 activation is required for translocation of apoptosis-inducing factor (AIF) from the mitochondria to the nucleus and that AIF is necessary for PARP-1-dependent cell death. N-methyl-N'-nitro-N-nitrosoguanidine, H2O2, and N-methyl-d-aspartate induce AIF translocation and cell death, which is prevented by PARP inhibitors or genetic knockout of PARP-1, but is caspase independent. Microinjection of an antibody to AIF protects against PARP-1-dependent cytotoxicity. These data support a model in which PARP-1 activation signals AIF release from mitochondria, resulting in a caspase-independent pathway of programmed cell death.     

Specific inhibition of nuclear RNA polymerase II by alpha-amanitin

alpha-Amanitin, a toxic substance from the mushroom Amanita phalloides, is a potent inhibitor of DNA-dependent RNA polymerase II (the nucleoplasmic form) from sea urchin, rat liver, and calf thymus. This compound exerts no effect on the activity of polymerase I (nucleolar form) or polymerase III (also nucleoplasmic). The inhibition is due to a specific interaction with polymerase II or with a complex of DNA and polymerase II.     

Optical negative refraction in bulk metamaterials of nanowires

Negative refraction in metamaterials has generated great excitement in the scientific community. Although negative refraction has been realized in microwave and infrared by using metamaterials and by using two-dimensional waveguide structures, creation of a bulk metamaterial showing negative refraction at visible frequency has not been successful, mainly because of the significant resonance losses and fabrication difficulties. We report bulk metamaterials made of nanowires that show such negative refraction for all incident angles in the visible region. Moreover, the negative refraction occurs far from any resonance, resulting in a low-loss and a broad-band propagation at visible frequencies. These remarkable properties can substantially affect applications such as imaging, three-dimensional light manipulation, and optical communication.     

Reversal of neurological defects in a mouse model of Rett syndrome

Rett syndrome is an autism spectrum disorder caused by mosaic expression of mutant copies of the X-linked MECP2 gene in neurons. However, neurons do not die, which suggests that this is not a neurodegenerative disorder. An important question for future therapeutic approaches to this and related disorders concerns phenotypic reversibility. Can viable but defective neurons be repaired, or is the damage done during development without normal MeCP2 irrevocable? Using a mouse model, we demonstrate robust phenotypic reversal, as activation of MeCP2 expression leads to striking loss of advanced neurological symptoms in both immature and mature adult animals.     

Cellular oncogenes and multistep carcinogenesis

Two dozen cellular proto-oncogenes have been discovered to date through the study of retroviruses and the use of gene transfer. They form a structurally and functionally heterogeneous group. At least five distinct mechanisms are responsible for their conversion to active oncogenes. Recent work provides experimental strategies by which many of these oncogenes, as well as oncogenes of DNA tumor viruses, may be placed into functional categories. These procedures may lead to definition of a small number of common pathways through which the various oncogenes act to transform cells.