QTL mapping of volatile compounds in ripe apples detected by proton transfer reaction-mass spectrometry

The availability of genetic linkage maps enables the detection and analysis of QTLs contributing to quality traits of the genotype. Proton Transfer Reaction Mass Spectrometry (PTR-MS), a relatively novel spectrometric technique, has been applied to measure the headspace composition of the Volatile Organic Compounds (VOCs) emitted by apple fruit genotypes of the progeny ‘Fiesta’ × ‘Discovery’. Fruit samples were characterised by their PTR-MS spectra normalised to total area. QTL analysis for all PTR-MS peaks was carried out and 10 genomic regions associated with the peaks at m/z = 28, 43, 57, 61, 103, 115 and 145 were identified (LOD > 2.5). We show that it is possible to find quantitative trait loci (QTLs) related to PTR-MS characterisation of the headspace composition of single whole apple fruits indicating the presence of a link between molecular characterisation and PTR-MS data. We provide tentative information on the metabolites related to the detected QTLs based on available chemical information. A relation between apple skin colour and peaks related to carbonyl compounds was established. The two authors contributed equally to this work.     

Use of near infrared reflectance and transmittance coupled to robust calibration for the evaluation of nutritional value in naked oats

A rapid accurate and precise method for simultaneous determination of β-glucan and protein content in naked oat samples, based on the coupling of near-infrared spectroscopy and chemometrics, is presented. In particular, three different spectroscopic approaches [near infrared reflectance (NIR) and transmittance (NIT) on flour and NIT on whole grains] and various spectral pretreatments were considered. To account for the possibility of outlying samples, a robust version of the PLS algorithm (namely partial robust M-regression) was used. All the models resulted as accurate as the reference methods, reflectance spectroscopy being the technique providing the best outcomes. Variable reduction by inclusion of the most relevant predictors only (as evaluated by VIP scores) resulted in simpler and, in one case, more parsimonious models, without loss in accuracy.     

Carbon dynamics in small tropical catchments under preserved forest and cacao agroforestry systems

Agroforestry Systems - Inland waters such as streams that receive carbon from terrestrial landscapes usually have a net heterotrophic metabolism and emit significant amounts of CO2 to the...     

Ozone fumigation of Quercus ilex L. slows down leaf litter decomposition with no detectable change in leaf composition

Context

The evaluation of changes in litter decomposition rate due to increasing trend in tropospheric ozone is an emerging field of investigation, providing relevant information on long-term forest ecosystem sustainability.

Aims

This research aims to clarify the effects of ozone exposure on Quercus ilex leaf chemical composition and decomposition slow down.

Methods

Young plants were fumigated in growth chambers at a cumulative dose of 17.15 ppm h. To assess the fumigation effectiveness, stomatal conductance and net photosynthesis were monitored. Leaves were analysed for C, N, S, Ca, Mg, K, Fe, Zn, Mn, total soluble sugars, starch, acid-detergent fibre (ADF), lignin and cellulose prior to the incubation in litter bags in mesocosms, and during decomposition along 395 days.

Results

Ozone-exposed leaves showed a significant reduction in net photosynthesis and stomatal conductance but did not differ from control leaves in all the chemical parameters analysed. Nevertheless, leaf decomposition rate was lower in treated leaves. The main differences between the models describing the mass loss in exposed and control leaves were played by ADF for exposed leaves and by lignin for control leaves, as well as by N, that showed a greater contribution in the model for the exposed leaves.

Conclusion

Ozone fumigation of Q. ilex results in leaf litter decomposition slowing down, mainly due to ADF joint dynamics with the other variables describing mass decay, even if no detectable changes in initial leaf composition occur.     

Steam explosion pretreatment used to remove hemicellulose to enhance the production of a eucalyptus organosolv dissolving pulp

The steam explosion (SE) pretreatment associated with the organosolv process was investigated to produce dissolving pulp from eucalyptus. Prehydrolysis Kraft (PHK) pulping was also done to produce viscose and acetate grade pulps as reference. The organosolv pulps were delignified in two steps with sodium chlorite. Viscose and acetate grade PHK pulps were bleached by OD₀(EH)D₁P and OD₀(EP)D₁PCCE sequences, respectively. Dilute acid-catalyzed (with acid addition) SE pretreatment dissolved more xylan than auto-catalyzed (no acid addition) SE pretreatment. Steam-exploded unbleached organosolv pulps showed lower residual lignin content and screened yield than unbleached organosolv pulps without SE pretreatment. Steam explosion pretreatment helped to decrease lignin content and damaged fiber length of unbleached organosolv pulps. The 1.0% H₂SO₄ organosolv pulp (organosolv dissolving pulp at bioconversion conditions) showed the highest reactivity. Even showing low viscosity for some applications, in general, the organosolv dissolving pulps produced in this study can be used for making lyocell fibers.     

Relationships between reflectance and absorbance chlorophyll indices with RGB (Red,Green, Blue) image components in seedlings of tropical tree species at nursery stage

Methods based on RGB (Red, Green, Blue) image segmentation may emerge as a new and low-cost method for estimation the quality of tree seedlings. However, the vast number of indexes based on the use of the RGB image segmentation and the lack of references in the literature still hinder the widespread use of this technology. Thus, we conducted a study aiming to test the relationships between methods based on absorbance and reflectance, widely used for the estimation of chlorophyll contents and physiological status of trees, and ten indexes based on RGB component analysis. We used leaves of five tropical tree species, belonging to different botanical families. Leaf absorbance was measured using the handheld chlorophyll meter SPAD-502, reflectance was measured using a spectrometer and the RGB indices were obtained from digitalized images of the leaves using a flatbed scanner. Modified linear regression models including all five species were used to relate RGB indices to absorbance and reflectance indices. Data collected from leaves of seedlings of five tropical tree species indicated that digital image processing technology can be a useful and rapid nondestructive method for assessment of physiological status of tree seedlings at nursery stage. Among the RGB indexes tested in this study the R, 2R*(G???B)/(G?+?B) and 2G*(G???B)/(G?+?B) are the most promising for analysis the tropical seedlings physiological status and quality.

     

Comparison of the α-amylase inhibitor-1 from common bean (Phaseolus vulgaris) varieties and transgenic expression in other legumes--post-translational modifications and immunogenicity

The seeds of peas (Pisum sativum) and chickpeas (Cicer arietinum) expressing a gene for α-amylase inhibitor-1 (αAI) from the common bean (Phaseolus vulgaris) are protected from damage by old world bruchids (pea and cowpea weevils). Here, we used electrospray ionization time-of-flight mass spectrometry to compare the post-translational modifications of αAI from transgenic sources with the processed forms of the protein from several bean varieties. All sources showed microheterogeneity with differences in the relative abundance of particular variants due to differences in the frequency of addition of glycans, variable processing of glycans, and differences of C-terminal exopeptidase activity. The structural variation among the transgenics was generally within the range of the bean varieties. Previously, mice showed allergic reactions following ingestion of transgenic pea αAI but not bean αAI. Here, only minor differences were observed following intraperitoneal sensitization. Both of the transgenic pea and bean forms of αAI elicited Th1 and Th2 antibody isotype responses, suggesting that both proteins are immunogenic and could potentially be allergenic.     

Evaluation of Cymbopogon flexuosus and Alpinia zerumbet essential oils as biopesticides against Callosobruchus maculatus

Journal of Plant Diseases and Protection - This study aimed to investigate the effects of the essential oils of Cymbopogon flexuosus and Alpinia zerumbet in the treatment of cowpea [Vigna...     

Removal of Arsenic from Aqueous Solutions by Sorption onto Sewage Sludge-Based Sorbent

This study aimed at evaluating and comparing the removal of arsenic from solutions by a low-cost waste-based sorbent, produced by pyrolysing sewage sludge under appropriate conditions, and by a commercially activated carbon. Batch sorption experiments were performed under isothermal conditions (20°C), in order to evaluate the effect of pH on the arsenic sorption kinetics and on the equilibrium sorption capacity of the materials under study. Kinetic data revealed that the arsenic sorption was faster onto the activated carbon than onto the pyrolysed sludge. The sorption process was well described by both the pseudo-first and pseudo-second-order kinetics equations for both materials. Changes in the initial solution pH have distinct effects on the removal of arsenic onto pyrolysed sludge and activated carbon. While for pyrolysed sludge, pH affects essentially the equilibrium time, for activated carbon it affects the sorption capacity. Equilibrium results were well described by both Freundlich and Langmuir isotherm models, although fittings corresponding to the Langmuir isotherm were slightly better. The Langmuir maximum sorption capacity determined for the pyrolysed sludge was 71???g?g^?1, while for activated carbon was 229???g?g^?1. Despite the relative lower capacity of the pyrolysed sludge, the considerable lower cost and the valorisation of the sludge may justify further research on its use for water decontamination.