Stocktake study of current fertilisation recommendations across Europe and discussion towards a more harmonised approach

The European Commission has set targets for a reduction in nutrient losses by at least 50% and a reduction in fertiliser use by at least 20% by 2030 while ensuring no deterioration in soil fertility. Within the mandate of the European Joint Programme EJP Soil ‘Towards climate-smart sustainable management of agricultural soils’, the objective of this study was to assess current fertilisation practices across Europe and discuss the potential for harmonisation of fertilisation methodologies as a strategy to reduce nutrient loss and overall fertiliser use. A stocktake study of current methods of delivering fertilisation advice took place across 23 European countries. The stocktake was in the form of a questionnaire, comprising 46 questions. Information was gathered on a large range of factors, including soil analysis methods, along with soil, crop and climatic factors taken into consideration within fertilisation calculations. The questionnaire was completed by experts, who are involved in compiling fertilisation recommendations within their country. Substantial differences exist in the content, format and delivery of fertilisation guidelines across Europe. The barriers, constraints and potential benefits of a harmonised approach to fertilisation across Europe are discussed. The general consensus from all participating countries was that harmonisation of fertilisation guidelines should be increased, but it was unclear in what format this could be achieved. Shared learning in the delivery and format of fertilisation guidelines and mechanisms to adhere to environmental legislation were viewed as being beneficial. However, it would be very difficult, if not impossible, to harmonise all soil test data and fertilisation methodologies at EU level due to diverse soil types and agro-ecosystem influences. Nevertheless, increased future collaboration, especially between neighbouring countries within the same environmental zone, was seen as potentially very beneficial. This study is unique in providing current detail on fertilisation practices across European countries in a side-by-side comparison. The gathered data can provide a baseline for the development of scientifically based EU policy targets for nutrient loss and soil fertility evaluation.     

National inventory and prioritization of crop wild relatives: case study for Benin

Species prioritization is a crucial step in any development of conservation strategy, especially for crop wild relatives (CWR), since financial resources are generally limited. This study aimed at: assessing the biodiversity of crop wild relatives in Benin and identifying priority species for active conservation. Data were collected through literature review to establish an exhaustive list of CWR in Benin. Eight prioritization criteria and different prioritization systems were used. The top 50 species obtained by each of these methods were identified and twenty final top CWR were shortlisted as those occurring as priority across methods. A total of 266 plant species belonging to 65 genera and 36 families were identified. The most represented are: Cyperaceae (12.50 %), Leguminosae-Papilionoideae (11.87 %), Convolvulaceae (11.25 %), Poaceae (10.31 %), Asteraceae (7.81 %), Solanaceae (6.87 %) and Dioscoreaceae (5.31 %). Among the 20 species of highest priority for conservation, Manihot glaziovii Müll. Arg. and Piper guineense Schumach. et Thonn., appeared as the most represented species on top of the list.     

Swine influenza virus infection dynamics in two pig farms; results of a longitudinal assessment

ABSTRACT: In order to assess the dynamics of influenza virus infection in pigs, serological and virological follow-ups were conducted in two whole batches of pigs from two different farms (F1 and F2), from 3 weeks of age until market age. Anti-swine influenza virus (SIV) antibodies (measured by ELISA and hemagglutination inhibition) and nasal virus shedding (measured by RRT-PCR and isolation in embryonated chicken eggs and MDCK cells) were carried out periodically. SIV isolates were subtyped and hemagglutinin and neuraminidase genes were partially sequenced and analyzed phylogenetically. In F1, four waves of viral circulation were detected, and globally, 62/121 pigs (51.2%) were positive by RRT-PCR at least once. All F1 isolates corresponded to H1N1 subtype although hemagglutination inhibition results also revealed the presence of antibodies against H3N2. The first viral wave took place in the presence of colostral-derived antibodies. Nine pigs were positive in two non-consecutive sampling weeks, with two of the animals being positive with the same isolate. Phylogenetic analyses showed that different H1N1 variants circulated in that farm. In F2, only one isolate, H1N2, was detected and all infections were concentrated in a very short period of time, as assumed for a classic influenza outbreak. These findings led us to propose that influenza virus infection in pigs might present different patterns, from an epidemic outbreak to an endemic form with different waves of infections with a lower incidence.     

Analyses of Dutch Haemophilus parasuis isolates by serotyping, genotyping by ERIC-PCR and Hsp60 sequences and the presence of the virulence associated trimeric autotransporters marker

In this study, 117 isolates of Haemophilus parasuis from organs and tissues from pigs showing clinical signs, were characterised and compared with 10 H. parasuis reference strains. The isolates were subjected to the 16S rRNA gene PCR and subsequently serotyped, genotyped by 60-kDa heat shock protein (Hsp60) gene sequences, the enterobacterial repetitive intergenic consensus (ERIC) PCR and a multiplex PCR for the detection of the vtaA virulence associated trimeric autotransporter genes. Serotyping revealed the presence of 13 H. parasuis serovars. Serovars 3 and 10 were not detected, and 16 of the 117 H. parasuis isolates could not be typed by specific antisera. All isolates were positive in the 16S rRNA gene specific H. parasuis PCR. ERIC-PCR revealed a very heterogeneous pattern with 61 clusters; based on a 90% agreement. In total, 46 different Hsp60 sequence types were detected. Using 98% sequence similarity, as threshold for separation, 22 separate Hsp60 sequence clusters were distinguished. There was no correlation between H. parasuis serovars and ERIC-PCR clusters or Hsp60 sequence types, but both the ERIC-PCR and the Hsp60 sequence typing are suited as markers for H. parasuis molecular-epidemiology studies. In total, 102 H. parasuis swine isolates corresponded to the virulence associated group 1 vtaA type. The group 1 vtaA was detected in 12 different serovars. Only four of the 46 Hsp60 sequence types were not associated with the group 1 vtaA. This study shows that Dutch H. parasuis isolates from pigs with clinical signs have both a high serovar and genotypic lineage diversity. A majority of the known serovars contain the group 1 vtaA.     

Seroprevalence of Leptospira Hardjo in the Irish suckler cattle population

Background

Prior to the present study, the seroprevalence of leptospirosis in Irish suckler herds was unknown. In this study, we describe the herd and animal-level prevalence of Leptospira Hardjo infection in the Irish suckler cattle population. For the purposes of the study, the 26 counties of the Republic of Ireland were divided into 6 regions from which a representative number of herds were selected. A herd was considered eligible for sampling if it was not vaccinating against leptospirosis and if it contained ≥ 9 breeding animals of beef breed ≥ 12 months of age. In total, 288 randomly selected herds were eligible for inclusion in the seroprevalence dataset analysis. Serological testing was carried out using a commercially available monoclonal antibody-capture ELISA, (sensitivity 100%; specificity 86.67%).

Results

Herds were categorised as either “Free from Infection” or “Infected” using the epidemiological software tool, FreeCalc 2.0. Using this classification, 237 herds were “Infected” (82.29%). The South West and South East regions had the highest herd prevalence. The regional effect on herd prevalence was largely mirrored by breeding herd size. A true animal-level prevalence of 41.75% was calculated using the epidemiological software tool, TruePrev. There was a statistically significant regional trend, with true prevalence being highest in the South East (P < 0.05). The median Breeding Herd Size (BHS), when categorised into quartiles, had a statistically significant influence on individual animal true seroprevalence (P < 0.001); true seroprevalence increased with increasing BHS.

Conclusions

Leptospirosis is a widespread endemic disease in the Republic of Ireland. It is possible that economic losses due to leptospirosis in unvaccinated Irish suckler herds may be underestimated.     

Determining the spatial distribution of spawning by anadromous and resident brown trout Salmo trutta L using strontium content of eggs collected from redds

Abstract – Strontium (Sr) content of eggs collected from redds were used to determine the spawning contribution of resident and anadromous female brown trout in the Taieri River, New Zealand and were analysed on the catchment and tributary scale. At the catchment scale, analysis of Sr showed differences between eggs collected above and below the Taieri River Gorge. Samples collected above the gorge all had low‐Sr concentrations similar to levels found in an entirely resident brown trout population. Samples collected below the gorge exhibited a broad range in Sr concentrations, ranging from levels comparable to the known anadromous samples to levels comparable to the known freshwater‐resident samples. This suggests that the gorge prevents upstream migration by anadromous brown trout in the Taieri River. At the tributary scale, this pattern of anadromous brown trout spawning downstream of freshwater‐resident fish was repeated in one of the two tributaries located downstream of the gorge. Energetic cost of migration is the most likely explanation for the observed patterns in catchment and tributary scale distribution of spawning by resident and anadromous brown trout. It is concluded that the use of Sr concentrations in eggs collected from redds is a cost‐effective and reliable method to investigate the spawning contribution by anadromous brown trout.     

Oil extraction from coriander fruits by extrusion and comparison with solvent extraction processes

The aim of this work was to optimise a single-screw extruder dedicated to coriander production and to investigate the effects of screw configuration, nozzle diameter and nozzle/screw distance. On the other hand, the coriander fruit was extracted using soxhlet methods, the results were compared with mechanical screw press methods.Maximum yield was obtained with single screw extruder for a configuration allowing the strongest oil expression (nozzle/screw distance: 3 mm, nozzle diameter: 9 mm).Comparing with mechanical press, the maximum yield was obtained by the soxhlet extraction with 21.25%.The effect of the operating parameters on oil quality was not important. In all the experiments tested, the oil quality was very good. The acid value was below 1.8 mg of KOH/g of oil and iodine values were tolerable (44 mg of iodine/100 g of oil).Nine fatty acids were identified, with petroselinic acid accounting for 74-77% of the total fatty acids, followed by linoleic, oleic and palmitic acids, accounting for 12-13%, 4-6% and 3%, respectively, of the total fatty acids.β-Sitosterol was the major sterol in all oils with 28% of total sterols of all oils. The next major sterols in all oils were stigmasterol (24-27% of total sterols) and Δ⁷-stigmasterol (14-18% of total sterols).