A new approach for neutron moisture meter calibration: artificial neural network

The neutron moisture meter (NMM) is a widely used device for sensing soil water content (SWC). Calibration accuracy and precision of the NMM are critical to obtain reliable results, and linear regression analysis of SWC against NMM count data is the most common method of calibration. In this study, artificial neural network (ANN) calibration models were developed and compared with linear regression. For this purposes, training and validation data were obtained from 2 calibration and 16 testing plots, respectively. Calibration plots consist of wet and dry soil water conditions separately. Data measured in dry beans and red pepper plots that have four different water levels were used to determine validity of regression and ANN-based calibration models. Volumetric SWC and NMM count ratio measurements were taken for depth intervals of 30 cm throughout a 120-cm-deep soil profile. Several neural network architectures were explored in order to determine the optimal network architecture. Data analyses were conducted for each soil layer and for the whole profile, separately, based on both linear regression and ANN. Linear regression calibration equation coefficients of determination (r ²) for the 0–30, 30–60, 60–90 and 90–120 cm depth ranges calculated by regression models were 0.85, 0.84, 0.72 and 0.82, respectively, and r ² values were 0.94, 0.95, 0.87 and 0.88 based on ANN models, respectively. Using the data set from the entire 120-cm soil profile for calibration by ANN, the r ² value was raised to 0.97.     

Alteration of virulence factors and rearrangement of pAsa5 plasmid caused by the growth of Aeromonas salmonicida in stressful conditions

Aeromonas salmonicida, a fish pathogen, is the causative agent of furunculosis. It was already shown that growing this bacterium in stressful conditions such as temperature above 22°C might lead to virulence attenuation. Unfortunately, many veterinary microbiology services and reference centers still routinely cultivate A. salmonicida at 25°C. Here we tested the presence of virulence factors by growth on specific medium as well as the integrity of the pAsa5 plasmid, which bears an important virulence factor, the type III secretion system (TTSS), by PCR analysis in twenty strains, most of which were grown at 25°C in their laboratory of origin. The analysis revealed that strains, which encountered the more stressful growth conditions displayed the most frequent absence of A-layer protein and secreted proteolytic activity. Moreover, many strains had lost parts of the pAsa5 plasmid in which the TTSS region was almost always affected. To confirm the effect of stressful growth conditions on the plasmid, three strains with an intact pAsa5 were cultured at 25°C for two weeks. A low but significant fraction of the tested colonies displayed pAsa5 rearrangements. The rearrangement always affected the TTSS region and led to a loss of virulence in the Dictyostelium discoideum co-culture assay. These results demonstrate that the instability of pAsa5 did not lead to its complete loss as previously proposed but to a more complex rearrangement phenomenon and emphasizes the necessity to grow A. salmonicida in appropriate conditions to preserve the complete virulence of the bacterium.     

Significance of Silver Birch and Bushgrass for Establishment of Microbial Heterotrophic Community in a Metal-Mine Spoil Heap

Differences in the culturable fractions of total and metal-tolerant bacteria inhabiting bulk soil of a metal-mine spoil heap and the rhizosphere of silver birch (Betula pendula) or bushgrass (Calamagrostis epigejos), completed with changes in total microbial community structure in the soil, were assessed by MIDI-FAME (fatty acid methyl ester) profiling of whole-cell fatty acids. In addition, the abundance of metal-tolerant populations among the culturable bacterial communities and their identity and the metal-tolerance patterns were determined. The high proportions of Cu- and Zn-tolerant bacteria that ranged from 60.6% to 94.8% were ascertained in the heap sites. Within 31 bacterial isolates obtained, 24 strains were Gram-positive and Arthrobacter, Bacillus, Rathayibacter, Brochothrix, and Staphylococcus represented those identified. Minimum inhibitory concentration (MIC) data indicated that several strains developed multi-metal tolerance, and the highest tolerance to Cu (10 mM) and Zn (12 mM) was found for Pseudomonas putida TP3 and three isolated strains (BS3, TP12, and SL16), respectively. The analysis of FAME profiles obtained from the culturable bacterial communities showed that Gram-positive bacteria predominated in bulk soil of all heap sites. In contrast, the rhizosphere communities showed a lower proportion of the Gram-positive group, especially for silver birch. For the total microbial community, mostly Gram-negative bacteria (e.g., Pseudomonas) inhabited the heap sites. The results suggest that the quantitative and qualitative development of heterotrophic microbiota in the soil of the metal-mine spoil heap seems to be site-dependent (i.e., rhizosphere vs. bulk soil), according to differences in the site characteristics (e.g., enrichment of nutrients and total metal concentrations) and impact of plant species.     

Geochemistry of the Hyperalkaline Gorka Pit Lake (pH?>?13) in the Chrzanow Region, Southern Poland

The Gorka pit lake was formed in an inactive Jurassic limestone quarry after cessation of open-pit dewatering. The main problem of the water quality in this area is linked to a large volume of extremely alkaline leachate disposed in the flooded quarry. The lake is meromictic due to a large density contrast between shallow and deep water layers. Water in the lake is of the Na?CCO₃?COH type, pH is in the range from 11.5 to 13.3, and there are high concentrations of sulfate and several toxic elements (Al, As, Cr, Mo, P, and V). The chemical composition of the extremely alkaline leachate was formed as a result of the groundwater interaction with the industrial red mud wastes containing 5?C10 wt.% of sodium carbonate. There is a trend of increasing concentrations and pH values with depth, mainly due to the in-gassing of atmospheric CO₂ into the surface layer and due to density stratification in the water column. Similar stratification is observed in groundwater wells around the lake. High dissolved concentrations of oxyanionic contaminants such as As, Cr, and V are caused by their high mobility and desorption under extremely alkaline conditions. In spite of reducing conditions at the bottom of the lake, caused by high concentrations of dumped organic matter, sulfate behaves conservatively because sulfate reducing bacteria do not survive in this pH range.     

Atmospheric Total Suspended Particulate Trace Element Identification by XRF at Ilha Grande, State of Rio De Janeiro, Brazil

Phosphorus, manganese, sulfur (S), lead, and strontium of atmospheric total suspended particulate matter, sampled during the rainy season and the dry season 2002 at the Ilha Grande Island (Rio de Janeiro State, Brazil) have been analyzed by XRF techniques. The results showed total mean concentrations of 27?±?16 ng P m^-3, 11?±?7 ng Mn m^-3, 159?±?126 ng S m^-3, 4.3?±?2.6 ng Pb m^-3, and 208?±?148 ng Sr m^-3. Generally, there is no clear influence of the two different climatic periods on the concentrations of most analyzed trace elements, with exception of sulfur the mean concentration of which, during the dry season, is about 60% higher than during the rainy season. This is probably due to biomass burning, a common practice in the Brazilian Southeast and Amazon region and/or to the presence of marine aerosols. The linear correlation coefficients strongly suggest the same source for P, Pb, and Mn. Some Pb, Mn, and P concentrations are in the range of typical values of urban areas. Potential sources of such elements are the urban and industrial emissions from the States of Rio de Janeiro and/or São Paulo.     

Railway transportation as a serious source of organic and inorganic pollution

Polycyclic aromatic hydrocarbons and heavy metal (Pb, Cd, Cu, Zn, Hg, Fe, Co, Cr, Mo) contents were established in soil and plant samples collected in different areas of the railway junction I?awa G?ówna, Poland. Soil and plant samples were collected in four functional parts of the junction, i.e. the loading ramp, main track within platform area, rolling stock cleaning bay and the railway siding. It was found that all the investigated areas were strongly contaminated with polycyclic aromatic hydrocarbons (PAHs). The PAH contamination of the soil was the highest in the railway siding and in the platform area (59,508 and 49,670?μg?kg(-1), respectively). In the loading ramp and cleaning bay, the PAH concentration in soil was lower but still relatively very high (17,948 and 15,376?μg?kg(-1), respectively). The contamination in the railway siding exceeded the average control level up to about 80 times. In the soil of all the investigated areas, four- and five-ring PAHs prevailed. The concentrations of PAHs were determined in four dominating species of plants found at the junction. The highest concentration was found in the aerial parts of Taraxacum officinale (22,492?μg?kg(-1)) growing in the cleaning bay. The comparison of the soil contamination with PAHs in the investigated railway junction showed a very significant increase of the PAHs level since 1995. It was found that the heavy metal contamination was also very high. Pb, Zn, Hg and Cd were established at the highest levels in the railway siding area, whereas Fe concentration was the highest in the platform area. A significant increase in mercury content was observed in the cleaning bay area. The investigations proved very significant increase of contamination with PAHs and similar heavy metals contamination in comparison with the concentration determined in the same areas 13?years ago.     

Exchangeable and Bioavailable Aluminium in the Mountain Forest Soil of Barania G��ra Range (Silesian Beskids, Poland)

The research was carried out in the spruce forests of Barania Góra (Silesian Beskids, Poland) affected by pandemic dying of trees. Twenty-seven samples were collected from the O layer in two plots: 17 in a cut down forest infested with insect pests (bark beetle) and ten in a 120-year-old healthy forest. The analyses covered basic parameters (pH(H2O), pH(KCl), w(org), C(tot), N(tot), CEC) and the concentrations of aluminium in the fractions leached with 0.1?M BaCl(2) (Al(exch)), 0.5?M CuCl(2) and 0.1?M Na(4)P(2)O(7) (Al(bio)) solutions. The total aluminium concentration in the soil was assayed digesting samples with hydrofluoric acid. The effect of pH and organic matter content on the amount of exchangeable (Al(exch)) and bioavailable (Al(exch)) aluminium in the soil was analysed. It has been found that the soils in both plots are strongly acidic and contain 550 to 1,700?mg?kg(-1) of exchangeable aluminium and 1,200 to 4,800?mg?kg(-1) of bioavailable aluminium. The lack of disease symptoms in the spruce trees in plot 2 can be explained by the higher content of organic matter in the soil. Unfortunately, one might expect that the high concentration of exchangeable aluminium will also cause the trees in the area to wither.     

The Impact of an Abandoned Uranium Mining Area on the Contamination of Agricultural Land in its Surroundings

This paper focuses on the influence of uranium tailing piles on the contamination of their immediate surroundings. The monitoring was carried out on arable land near Pribram in Central Bohemia, Czech Republic. The monitored arable land is located 600 m northeast of the bottom of the piles. In addition, the high uranium (U) content in the topsoil ranged from 40 to 220 ppm. A former portion of it was found in an exchangeable fraction (49%). Both of these facts make this land unsuitable for agricultural use. The sequential extraction discovered a shift in the U content among sample spots situated in and outside the path of the predominant wind direction. In the first group, uranium binds mainly to Fe/Mn oxides, while in the other samples, U is accumulated in the more mobilizable fractions.     

Sequential Elution Technique in Moss Pseudoscleropodium purum: Comparison between the Commonly Used Extracellular Extractant NiCl2 and Other New Extractants

The sequential elution technique (SET) is used to determine the distribution of elements in the different cell fractions of mosses. The extracellular extractants most commonly used in this technique are NiCl₂ and EDTA, although there are certain disadvantages associated with their use. In order to avoid such problems, we searched for new extractants that displace extracellularly bound metals, either because they are present at high concentrations (Ca) or because they have a high affinity for cation exchange sites (Hg and Au). The compounds HCl, NaCl, and CaCl₂ were tested as extractants of the former type, as possible alternatives for the determination of extracellular metals in the moss Pseudoscleropodium purum. Calcium chloride was finally chosen as is it potentially the most successful in terms of binding to the cation exchange sites without altering the membrane permeability. The concentration chosen was 160 mM, as this yielded maximum displacement of Zn without membrane alterations. An experiment was then carried out to test the efficiency of Ca in extracting extracellular Zn, under laboratory and field conditions. In addition, Hg and Au were tested, at different concentrations, as extractants with high affinity for cation exchange sites, as neither of these elements has previously been used in the SET, and both display electronic characteristics that suggest their potential usefulness in displacing other cations from cation exchange sites. The results obtained show that extraction of extracellularly bound metal by high concentrations of Ca should be ruled out, as total extraction of Zn was not achieved. Both Hg and Au produced membrane alterations at low concentrations and moreover, neither was more efficient at extracting Zn than the reference extractant (20 mM NiCl₂).