Antifungal proteins in commercial hybrids and elite sorghums

The antifungal proteins (AFP) in the caryopsis of commercial and elite sorghums grown in several environments were related to grain mold resistance. Previous studies revealed that improved grain mold resistance was correlated with higher levels of AFP at combine harvest maturity [50 days after anthesis (DAA)] or with better retention of AFP after physiological maturity (30 DAA). Commercial hybrids and public parental lines and hybrids were grown in College Station, TX, during 2000, 2001, and 2002. Samples of caryopses were collected at 30 and 50 DAA, and caryopsis proteins were extracted, blotted, identified with immunoassays, and quantified for two AFP (chitinase and sormatin). Sorghums varied in amounts of AFP and their ability to retain AFP after physiological maturity. The environment in 2002 was conducive for fungal deterioration of grain, and a wide range of AFP and grain molding was observed at harvest maturity. High levels of AFP and low levels of grain molding were observed in non-mold-conducive environments in 2000 and 2001. Commercial and elite sorghums with higher levels and increased retention of AFP had less grain molding in the mold-conducive environment.     

The crystal structure of a sodium galactose transporter reveals mechanistic insights into Na+/sugar symport

Membrane transporters that use energy stored in sodium gradients to drive nutrients into cells constitute a major class of proteins. We report the crystal structure of a member of the solute sodium symporters (SSS), the Vibrio parahaemolyticus sodium/galactose symporter (vSGLT). The approximately 3.0 angstrom structure contains 14 transmembrane (TM) helices in an inward-facing conformation with a core structure of inverted repeats of 5 TM helices (TM2 to TM6 and TM7 to TM11). Galactose is bound in the center of the core, occluded from the outside solutions by hydrophobic residues. Surprisingly, the architecture of the core is similar to that of the leucine transporter (LeuT) from a different gene family. Modeling the outward-facing conformation based on the LeuT structure, in conjunction with biophysical data, provides insight into structural rearrangements for active transport.     

Fast readout of object identity from macaque inferior temporal cortex

Understanding the brain computations leading to object recognition requires quantitative characterization of the information represented in inferior temporal (IT) cortex. We used a biologically plausible, classifier-based readout technique to investigate the neural coding of selectivity and invariance at the IT population level. The activity of small neuronal populations (approximately 100 randomly selected cells) over very short time intervals (as small as 12.5 milliseconds) contained unexpectedly accurate and robust information about both object "identity" and "category." This information generalized over a range of object positions and scales, even for novel objects. Coarse information about position and scale could also be read out from the same population.     

Antifungal effects of iron sulfate on grapevine fungal pathogens

The present study aimed to determine the most efficient experimental conditions of iron sulfate use leading to optimal inhibition in the development of fungal pathogens. Assays have been focused on fungal species inducing severe grapevine diseases. FeSO₄ directly inhibited the in vitro mycelial growth of Botrytis cinerea, Eutypa lata, Phaeomoniella chlamydospora, Phaeoacremonium aleophilum, Diplodia seriata, and Neofusicoccum parvum with variable efficiency in the range of 0.5–10 mM. The development was always completely inhibited at 20 mM. This inhibitory effect was greatly increased at acidic pH values. The anionic moiety of the molecule was of importance since bromide, chloride and sulfate were highly active, whereas acetate and oxalate showed a small effect. Electron microscope observations on E. lata and B. cinerea showed that a treatment with FeSO₄ induced dramatic changes in the hyphal organization leading to cell death. No toxicity was observed on grapevine leaves following repeated FeSO₄ sprays in the antifungal concentration range. Therefore, FeSO₄ may be proposed to effectively replace the long-term pollutant use of CuSO₄ as an antifungal agent, with the additional advantage of iron being an important plant micronutrient.     

Sensitivity in the estimation of parameters fitted by simple linear regression models in the ratio of blueberry buds to fruits in Chile using percentage counting

Blueberry exporting is an important activity in Chile, with fresh blueberries commanding the highest prices and being among the most exported products to the European and North American markets. To maintain quality in the centres of consumption, farmers must continuously improve the logistics of harvesting and shipping the blueberries. Thus every year they must calculate the production of the orchard well in advance in order to hire staff and ensure the logistic cold chain. For this calculation they use a count of flower buds and a simple linear model of which the slope parameter represents the number of fruits per bud. However, due to the cost of the counting procedure, some producers count only a fraction of each plant (25%, 50% or 100%), and furthermore they do not know what effect the variety and productive age of the plants may have on the estimation. The objective of this work is to measure the impact of the cultivated variety, the age of the plant in productive years, and the percentage of fruits counted in estimating the parameter fruits per bud. The study involved monitoring 310 plants of different varieties and ages distributed in northern, central and southern Chile (over an area of approximately 700 km × 200 km). The parameter was estimated by fitting simple linear regression models (SLRM) as a function of the number of fruits and flower buds. To evaluate the impact on the parameter, the SLRM was fitted considering the variables observed in all the plants, by percentage counted, by variety and by variety-age of the plant. The major findings indicate significant differences in the estimation of the parameter, suggesting that in order to estimate fruits per bud the whole plant must be counted and its age and variety taken into account.     

<Emphasis Type="Italic">In silico</Emphasis> genomic subtraction guides development of highly accurate,DNA-based diagnostics for <Emphasis Type="Italic">Ralstonia solanacearum</Emphasis> race 3 biovar 2 and blood disease bacterium

New rapid diagnostic methods are urgently needed to discriminate the quarantine pathogen Ralstonia solanacearum (Rs) race 3 biovar 2 (R3B2) from other populations of Rs that lack the adaptation to cause bacterial wilt disease in temperate regions. We used an in silico bioinformatic approach to identify several genome sequences potentially specific to R3B2 strains. Primer sets were designed to PCR-amplify sequences in these regions, and four sets were ultimately shown to be >99% accurate for detection of R3B2 strains. On the basis of these results, several primers were designed to enable development of a loop-mediated isothermal amplification assay that was rapid, technologically simple, and essentially 100% accurate for identification of R3B2 when applied to a comprehensive collection of geographically diverse Rs strains. We fortuitously found that a sequence in one of the “R3B2-specific” regions has ~90% identity to a sequence present in strains of the blood disease bacterium (BDB), a member of the Rs species complex that infects banana. Alignments of these sequences allowed design of a second PCR primer set that proved 100% accurate for identification of BDB strains when tested on the 22 BDB strains available to us. These results demonstrate the power of in silico genomic subtraction for rapid identification of population-specific DNA sequences and for the development of simple, reliable detection methods for Rs subpopulations.     

华北农业高产粮区地下水硝酸盐污染环境价值损失评估技术研究——以山东省桓台县为例

应用人力资本法、防护支出法和支付意愿调查法评估了华北高产粮区桓台县地下水农业面源硝酸盐污染的环境经济损失,并分析了不同评估技术对农业面源硝酸盐污染地下水环境价值损失评估的适用性,其适用性优先序为防护支出法的深井工程法>脱硝工程法≥人力资本法>支付意愿调查法。2 0 0 2年该县由农业地下水硝酸盐污染造成的年环境价值损失约为880万元(86 0 .8～1170 .1万元/浕) ,占当年农业总产值的1.1%～1.5 %。     

Modified method for the analysis of free fatty acids in fish

The objective of this study was the development of a method for the quantification of free fatty acids (FFA) using less aggressive reactants against the handler and the environment than those used in the classic method of Lowry and Tinsley. The modified procedure is a variation of the Lowry and Tinsley method employing cyclohexane in place of benzene. The use of benzene is prohibited in certain work processes and laboratories, and the competent authority in each country is actively promoting research into harmless or less harmful products that could replace benzene. A comparison with the traditional AOCS titration method for oil analysis was performed. FFA content in mackerel frozen at -10 degrees C was measured according to the three methods over a 12 month period. The results showed similar values, and good correlations were obtained.     

Abundant PrP(CWD) in tonsil from mule deer with preclinical chronic wasting disease.

A monoclonal antibody dot-blot assay was used to evaluate detergent lysates of tonsil tissue from mule deer to detect PrP(CWD), the marker for the cervid transmissible spongiform encephalopathy chronic wasting disease (CWD). Samples of formalin-fixed brain and tonsil tissues from mule deer were examined for PrP(CWD) using immunohistochemistry (IHC) with Mab F99/97.6.1, the gold standard for diagnosis of preclinical CWD. The contralateral tonsil from each of the 143 deer was prepared for confirmatory IHC and as a 10% (wt/vol) detergent lysate without purification or enrichment steps for monoclonal antibody dot-blot assay. PrP(CWD) was detected by dot-blot assay in 49 of 50 samples considered positive by IHC. Forty-eight of the positive samples were evaluated with a quantitative dot-blot assay calibrated with recombinant PrP. Tonsillar PrP(CWD) concentrations ranged from 34 to 1,188 ng per 0.5 mg starting wet weight of tissue. The abundant PrP(CWD) in mule deer tonsil will facilitate development and validation of high-throughput screening tests for CWD in large populations of free-ranging deer.