Molecular detection of protists associated with the Manila clam Ruditapes philippinarum inhabiting the Wajiro tidal flat in Hakata Bay,Fukuoka Prefecture

Fisheries Science - Tidal flats are ecologically important as they support a large community of animals (e.g., crabs, mollusks, and polychaetes) and restore water quality. However, information...     

Teleconnection of rainfall time series in the central Nile Basin with sea surface temperature

We investigated teleconnections of rainfall time series in the central Nile Basin (Sudan and South Sudan) with localities in the global sea surface temperature (SST) field, using monthly rainfall data from 11 gauging stations from 1960 to 1999. Annual rainfall ranged from 100 mm in the north to more than 700 mm in the south, and all stations had a strong contrast between rainy and dry seasons with rainless dry periods of several months. Rainfall time series at the stations were categorized as strongly seasonal, with precipitation concentration index exceeding 16 and seasonality index exceeding 0.9. The rainfall stations were classified into four zones on the basis of annual rainfall, seasonality, and cross-correlations among the stations. We calculated cross-correlations of interannual rainfall time series in summer (July and August) with the global SST field. For short lag times (0 or 1 month), summer rainfall in Zones I and II (northern arid regions) had significant correlations with SST over the eastern Mediterranean Sea and southern Indian Ocean, summer rainfall in Zone III (semiarid region) had significant negative correlations with SST over the Indian Ocean, and summer rainfall in Zone IV (southern wet region) had significant correlations with SST over tropical areas and the southwestern Pacific Ocean. For long lag times (3–6 months), Nile Basin summer rainfall time series had significant correlations with SST in various regions of the Atlantic and Indian Oceans but not the Pacific Ocean. Rainfall in Zones I and II had positive correlations (significance level?<?0.01) with SST south of Greenland and around the Azores Islands and negative correlations with SST south of Madagascar; rainfall in Zone III had negative correlations with SST in parts of the Indian Ocean; and rainfall in Zone IV had significant positive correlations with SST southwest of South Africa and negative correlations with SST in the southwestern Indian Ocean. In sum, rainfall in three of the zones (I, II, and IV) had significant positive and negative correlations with SST in parts of the Indian and Atlantic Oceans. For each of these zones, one positive correlation and one negative correlation were selected and correlations with the time series of the difference between the two SST records were calculated. Correlations of Nile Basin rainfall with the SST differences were stronger than the original positive and negative correlations. The resulting time series of SST difference were applied to an artificial neural network to predict summer rainfall, yielding satisfactory correlation coefficients between the observed and predicted summer rainfall (r?>?0.70).     

Effect of arsenic on concentrations and translocations of mineral elements in the xylem of rice

By using Particle-Induced X-ray Emission (PIXE) technique, the effect of arsenic (As) on the mineral contents and translocation in the xylem of rice (Oryza sativa L. cv. ‘Akihikari’) was studied. The results suggest that exogenous As increased the concentrations of phosphorus (P), calcium (Ca) magnesium (Mg), sulfur (S), and manganese (Mn) in xylem, while the concentrations of potassium (K) remained unchanged. The highest concentration of As to the rice roots did not have any clear effect on the translocation of P, Ca, S, and chlorine (Cl) in the xylem, indicating that the increasing concentrations of the minerals may be due to a condensation effect, resulting from the repression of water movement in xylem by As-toxicity. Among the metal micronutrients, As decreased the concentrations and translocations of iron (Fe), zinc (Zn), and copper (Cu).     

Establishment of a new cell line susceptible to Cyprinid herpesvirus 3 (CyHV‐3) and possible latency of CyHV‐3 by temperature shift in the cells

A new cell line named CCF‐K104 predominantly consisting of fibroblastic cells showed optimal growth at temperatures from 25 °C to 30 °C. Serial morphological changes in the cells induced by Cyprinid herpesvirus 3 (CyHV‐3) included cytoplasmic vacuolar formation, cell rounding and detachment. Mature virions were purified from CyHV‐3‐infected CCF‐K104 cells by sucrose gradient ultracentrifugation and had a typical herpesvirus structure on electron microscopy. Infectious CyHV‐3 was produced stably in CCF‐K104 cells over 30 viral passages. Our findings showed that CCF‐K104 is a useful cell line for isolation and productive replication of CyHV‐3. A temperature shift from 25 °C to 15 °C or 35 °C did not allow serial morphological changes as observed at 25 °C for 14 days. Under the same conditions, real‐time PCR showed that CyHV‐3 was present with low viral DNA loads, suggesting that CyHV‐3 may establish latent infection in CCF‐K104 cells. Amplification of the left and right terminal repeat sequences of the CyHV‐3 genome arranged in a head‐to‐tail manner was detected by nested PCR following an upshift in temperature from 25 °C to 35 °C. The PCR results suggested that the circular genome may represent a latent form of CyHV‐3.     

Degradation of the urban ecosystem function due to soil sealing: involvement in the heat island phenomenon and hydrologic cycle in the Tokyo metropolitan area

ABSTRACT

We reviewed the role of the soil function of urban green space in mitigating the heat island phenomenon and urban flood damage, which are important issues in the modern urban environment. Urban sprawl has progressed remarkably in the southern part of the Kanto District of Japan, especially since the 1960s. The grassland/bare land area ratio in the center of Tokyo was more than 70% in the 1930s but less than 40% in 1990. On the other hand, the paving area ratio was ~2% in the 1930s but more than 10 times that amount in 1990. Thus, cities, such as Tokyo, in the southern part of the Kanto District have been significantly sealed soil throughout time, and the heat island phenomenon has intensified. Urban green space helps to mitigate the heat island phenomenon based on the water retention and heat dissipation function of plants and unsealed soil. A cool island effect was reported during summer days in urban green spaces in Tokyo. The mitigation of the heat island effect seems to be large, even when conditions, such as the park area, land use, afforestation area ratio, and soil type, differ. Soil sealing and compaction affect urban flooding by hindering the penetration of rainwater and increasing surface runoff. According to a survey in the hilly basin (1 km²) of the western part of Tokyo, the proportion of farm- and forestland decreased due to development. The urban area increased from ~10% in the 1970s to ~60% in the 1980s. As a result, the flood arrival time shortened. Green spaces have a high rainwater permeability. The forest soil structure and presence of O horizons further increase the permeability. By promoting permeability to the underground, it is possible to reduce and delay the water runoff on the land surface. To develop urban green space as green infrastructure, it is necessary to accumulate more information on the current situation and agenda for the future of urban green space.     

Milking performance evaluation and factors affecting milking claw vacuum levels with flow simulator

Milking performance of milking machines that matches the production capability of dairy cows is important in reducing the risk of mastitis, particularly in high‐producing cows. This study used a simulated milking device to examine the milking performance of the milking system of 73 dairy farms and to analyze the factors affecting claw vacuum. Mean claw vacuum and range of fluctuation of claw vacuum (claw vacuum range) were measured at three different flow rates: 5.7, 7.6 and 8.7 kg/min. At the highest flow rate, only 16 farms (21.9%) met both standards of mean claw vacuum ≥35 kPa and claw vacuum range ≤ 7 kPa, showing that milking systems currently have poor milking performance. The factors affecting mean claw vacuum were claw type, milk‐meter and vacuum shut‐off device; the factor affecting claw vacuum range was claw type. Examination of the milking performance of the milking system using a simulated milking device allows an examination of the performance that can cope with high producing cows, indicating the possibility of reducing the risk of mastitis caused by inappropriate claw vacuum.     

Effectiveness of Fe3+-citrate and Fe3+-edta in ameliorating arsenic-toxicity (chlorosis) in hydroponic rice

Effectiveness of iron (Fe³⁺)-citrate and Fe³⁺-EDTA (ethylenediaminetetraacetic acid) in reducing arsenic (As)-toxicity in rice was evaluated. The treatments: 1) 0 µM As + 10 µM Fe³⁺-citrate (control), 2) 13.4 µM As + 10 µM Fe³⁺-citrate (As-treated), 3) 13.4 µM As + 10 µM Fe³⁺-citrate + 40 µM Fe³⁺-citrate (additional Fe³⁺-citrate), and 4) 13.4 µM As + 10 µM Fe³⁺-citrate + 40 µM Fe³⁺-EDTA (additional Fe³⁺-EDTA) were studied for 14 days. Chlorosis was found in the young leaves of the As-treated plants. Additional Fe³⁺-citrate failed to remediate the chlorosis, however, additional Fe³⁺-EDTA removed the chlorosis almost completely, indicating that the effectiveness of Fe³⁺-EDTA was much higher than Fe³⁺-citrate. The Fe³⁺-EDTA treated plants were greener than the additional Fe³⁺-citrate treated plants. Iron concentration in the shoots of additional Fe³⁺-EDTA plants was much higher than that of additional Fe³⁺-citrate plants, indicating that Fe³⁺-EDTA might have been more readily available to the plants roots than Fe³⁺-citrate.     

Fecal progestagens to detect and monitor pregnancy in captive female cheetahs (Acinonyx jubatus)

The purposes of the present study were to establish a noninvasive monitoring assay of fecal progestagen measurement to detect pregnancy and to identify the components of fecal progestagens in early, middle and late pregnancy in cheetahs. Feces were collected from 7 female cheetahs and analyzed from 30 days before the last copulation to parturition in 9 pregnancies. Blood was collected from one cheetah. Fecal progestagen and serum progesterone concentrations were determined by enzyme immunoassay (EIA). The profiles of the fecal progestagen concentrations were similar to the serum progesterone profile. Fecal progestagen and serum progesterone concentrations remained at the baseline until copulation. In the mean fecal progestagen profile during pregnancy (92.8 ± 0.4 days; from the last copulation to parturition), the concentrations increased 3-4 days after the last copulation and remained high until parturition. To investigate changes in the components of progestagen metabolites in the tripartite periods of gestation, fecal progestagens were analyzed by HPLC-EIA. Marked immunoreactive peaks consistent with 5α-pregnan-3α/β-ol-20-one and 5α-pregnan-3,20-dione and small peaks consistent with 5β-pregnan-3α/β-ol-20-one were detected. There were no distinct difference in the components of progestagens among the first, second and third trimesters of pregnancy. The hormone assay, as an indicator of fecal 5α-reduced pregnanes, is useful for detecting pregnancy and monitoring pregnant luteal activity in cheetahs.