Methicillin-resistant Staphylococcus aureus in a population of horses in Australia

Objective To evaluate if methicillin‐resistant Staphylococcus aureus (MRSA) is present in the horse population in Australia. Design A two‐part retrospective study of laboratory submissions of microbial culture results from horses. Methods Part A: medical records of 216 horses that had MRSA screening performed on nasal swabs collected over a 30‐day period at admission to the Scone Equine Hospital Clovelly Intensive Care Unit were retrieved. Part B: laboratory records from 2004 to 2009 of culture submissions to the Scone Veterinary Laboratory were reviewed and cultures that grew MRSA were identified. The MRSA isolates from Parts A and B were genotyped over an 18‐month period. Results MRSA screening of 216 horses identified eight (3.7%) positive samples. MRSA was isolated from cultures of 80 (0.002%) clinical bacteriology samples over a 6‐year period. Genotypic analysis was performed on 36 isolates. All MRSA characterised had the same pulse field gel electrophoresis pattern (type 1), with eight closely related subtypes identified (subtypes A–F and H) and 66% of isolates classified as subtype D, which multilocus sequence and staphylococcal cassette chromosome mec typing analysis identified as ST612‐MRSA‐IVa, a clonal complex (CC) 8 S. aureus strain. Antimicrobial resistance to more than two classes of antimicrobials was common. Conclusions MRSA was present in a population of horses in Australia. Genotypic analysis of the isolates identified the MRSA strain as CC8 S. aureus. Further research needs to be undertaken to evaluate MRSA infection and colonisation of horses and personnel in Australia.     

Advances in molecular diagnostics for Mycobacterium bovis

The two most important molecular diagnostic techniques for bovine tuberculosis are the polymerase chain reaction (PCR) because of its rapid determination of infection, and DNA strain typing because of its ability to answer important epidemiological questions. PCR tests for Mycobacterium bovis have been improved through recent advances in PCR technology, but still lack the sensitivity of good culture methods, and in some situations are susceptible to giving both false negative and false positive results. Therefore, PCR does not usually replace the need for culture, but is used to provide fast preliminary results. DNA typing of M. bovis isolates by restriction endonuclease analysis (REA) was developed 25 years ago in New Zealand, and remains an important tool in the New Zealand control scheme, where the typing results are combined with other information to determine large and expensive possum poisoning operations. A range of other DNA typing systems developed for M. bovis in the 1990 s have assisted epidemiological investigations in some countries but are now less commonly used. Variable number tandem repeat (VNTR) typing and spoligotyping, either alone or together, have now become the preferred approaches as they are robust and amenable to electronic analysis and comparison. Spoligotyping gives only moderate discrimination but can be easily applied to large numbers of isolates, and VNTR typing provides better discrimination than all other methods except for REA. While the current typing techniques are sufficient for most epidemiological purposes, more discriminating methods are likely to become available in the near future.     

External characteristics of the lateral aspect of the hoof differ between non-lame and lame horses

During a pre-purchase examination (PPE) there is always a debate about how clinical findings of the hoof different from ideal should be interpreted in relation to future lameness risk and/or unsuitability of the horse for the potential purchaser. The objectives of this study were to describe and compare external angular measurements, linear ratios and hoof capsule characteristics of non-lame and lame feet. Photographs of feet from 300 horses with foot pain and 25 non-lame horses were analysed. Hoof wall, heel and coronary band angles and hoof wall length and height, weight-bearing length, coronary band length and height of the coronary band at dorsal and palmar locations were measured and expressed as linear ratios.Mean hoof wall, heel and coronary band angles were larger in lame compared with non-lame feet; only the ratio of dorsal to palmar coronary band heights and the shape of the coronary band were significantly different between lame and non-lame horses. Growth rings were divergent and horn tubules were non-parallel in lameness of >3 months. At a PPE, a larger ratio of dorsal to palmar coronary band heights in one limb may be indicative of previous lameness in that foot. Changes in coronary band shape and divergent growth rings and horn tubules would suggest a longer duration.     

Getting priorities straight: risk assessment and decision-making in the improvement of inherited disorders in pedigree dogs

The issue of inherited disorders in pedigree dogs is not a recent phenomenon and reports of suspected genetic defects associated with breeding practices date back to Charles Darwin's time. In recent years, much information on the array of inherited defects has been assimilated and the true extent of the problem has come to light. Historically, the direction of research funding in the field of canine genetic disease has been largely influenced by the potential transferability of findings to human medicine, economic benefit and importance of dogs for working purposes. More recently, the argument for a more canine welfare-orientated approach has been made, targeting research efforts at the alleviation of the most suffering in the greatest number of animals. A method of welfare risk assessment was initially developed as a means of objectively comparing, and thus setting priorities for, different welfare problems. The method has been applied to inherited disorders in pedigree dogs to investigate which disorders have the greatest welfare impact and which breeds are most affected. Work in this field has identified 396 inherited disorders in the top 50 most popular breeds in the UK. This article discusses how the results of welfare risk assessment for inherited disorders can be used to develop strategies for improving the health and welfare of dogs in the long term. A new risk assessment criterion, the Breed-Disorder Welfare Impact Score (BDWIS), which takes into account the proportion of life affected by a disorder, is introduced. A set of health and welfare goals is proposed and strategies for achieving these goals are highlighted, along with potential rate-determining factors at each step.     

Combining ability and testcross performance of drought‐tolerant maize inbred lines under stress and non‐stress environments in Kenya

Drought and poor soil fertility are among the major abiotic stresses affecting maize productivity in sub‐Saharan Africa. Maize breeding efforts at the International Maize and Wheat Improvement Center (CIMMYT) have focused on incorporating drought stress tolerance and nitrogen‐use efficiency (NUE) into tropical maize germplasm. The objectives of this study were to estimate the general combining ability (GCA) and specific combining ability (SCA) of selected maize inbred lines under drought stress (DS), low‐nitrogen (LN) and optimum moisture and nitrogen (optimum) conditions, and to assess the yield potential and stability of experimental hybrids under these management conditions. Forty‐nine experimental three‐way cross hybrids, generated from a 7 × 7 line by tester crosses, and six commercial checks were evaluated across 11 optimum, DS and LN sites in Kenya in 2014 using an alpha lattice design with two replicates per entry at each site. DS reduced both grain yield (GY) and plant height (PH), while anthesis–silking interval (ASI) increased under both DS and LN. Hybrids ‘L4/T2’ and ‘L4/T1’ were found to be superior and stable, while inbreds ‘L4’ and ‘L6’ were good combiners for GY and other secondary traits across sites. Additive variance played a greater role for most traits under the three management conditions, suggesting that further progress in the improvement of these traits should be possible. GY under optimum conditions was positively correlated with GY under both DS and LN conditions, but GY under DS and LN was not correlated. Our results suggest the feasibility for simultaneous improvement in grain yield performance of genotypes under optimum, DS and LN conditions.     

The Effect of Nitrogen Rate on Vine Kill,Tuber Skinning Injury,Tuber Yield and Size Distribution,and Tuber Nutrients and Phytonutrients in Two Potato Cultivars Grown for Early Potato Production

Early potatoes are typically produced using less nitrogen than a full season potato crop as high rates of nitrogen may delay tuber set and lead to excessive vine growth that is difficult to terminate prior to harvest. Bintje and Ciklamen potato cultivars were grown with preplant soil nitrogen levels of 34 to 38, 67, and 101 kg N ha^-1 in 2013 and 2014 near Paterson, Washington. Nitrogen rate had little impact on the number of tubers and stems per plant of both cultivars, but increasing nitrogen rate tended to increase leaf area of both cultivars. Vine desiccation of Bintje with diquat was less complete as nitrogen rate increased, while Ciklamen vine kill was reduced by higher nitrogen in 1 of 2 years. Tuber skinning injury, tuber weight loss, and tuber size distribution were not affected by nitrogen rate. Tuber skinning injury and tuber weight loss were reduced in both cultivars by harvesting at 4 weeks after initial vine kill compared to harvesting at 2 weeks after vine kill. Total tuber yield was lower for both Bintje and Ciklamen in 1 of 2 years at the 34 to 38 kg N ha^-1 rate. Tuber nitrogen and zinc levels tended to increase with increasing nitrogen rates, while most other nutrients, vitamin C, total phenolics, and antioxidant capacity showed little response. It appears that 67 kg N ha^-1 provides adequate nitrogen to produce a good tuber set and yield of small tubers while not producing excessive vine growth that may be more difficult to kill.     

Genetic analysis of tropical maize inbred lines for resistance to maize lethal necrosis disease

Maize lethal necrosis (MLN) disease is a recent outbreak in eastern Africa and has emerged as a significant threat to maize production in the region. The disease is caused by the co-infection of Maize chlorotic mottle virus and any member of potyviridae family. A total of 28 maize inbred lines with varying levels of tolerance to MLN were crossed in a half-diallel mating design, and the resulting 340 F₁ crosses and four commercial checks were evaluated under MLN artificial inoculation at Naivasha, Kenya in 2015 and 2016 using an alpha lattice design with two replications. The objectives of the study were to (i) investigate the magnitude of general combining ability variance (σ _GCA ² ) and specific combining ability variance (σ _SCA ² ) and their interaction with years; (ii) evaluate the efficiencies of GCA based prediction and hybrid performance by means of a cross-validation procedure; (iii) estimate trait correlations in the hybrids; and (iv) identify the MLN tolerant single cross hybrids to be used as female parents for three-way cross hybrids. Results of the combined analysis of variance revealed that both GCA and SCA effects were significant (P < 0.05) for all traits except for ear rot. For MLN scores at early and late stages, GCA effects were 2.5–3.5 times higher than SCA effects indicating that additive gene action is more important than non-additive gene action. The GCA based prediction efficiency for MLN resistance and grain yield accounted for 67–90% of the variations in the hybrid performance suggesting that GCA-based prediction can be proposed to predict MLN resistance and grain yield prior to field evaluation. Three parents, CKDHL120918, CML550, and CKLTI0227 with significant GCA effects for GY (0.61–1.21; P < 0.05) were the most resistant to MLN. Hybrids “CKLTI0227 × CML550”, “CKDHL120918 × CKLTI0138”, and “CKDHL120918 × CKLTI0136” ranked among the best performing hybrids with grain yield of 6.0–6.6 t/ha compared with mean yield of commercial check hybrids (0.6 t/ha). The MLN tolerant inbred lines and single cross hybrids identified in this study could be used to improve MLN tolerance in both public and private sector maize breeding programs in eastern Africa.     

Microbial Degradation of Dimethylsilanediol in Soil

Dimethylsilanediol (DMSD) is the ultimate hydrolysis product of silicone (polydimethylsiloxane = PDMS) polymer in soil. Our previous paper showed that it would volatilize from soil, and the present study investigates the importance of microbial degradation in removing DMSD from soil. DMSD (¹⁴C-labeled) was thus incubated (1 mg kg^-1) for 30 wk at 25 °C in soils from a permanent grass field, a corn field, a deciduous woodland, and a pine woodland. Release of¹⁴ CO₂ varied from 0.4 to 1.6% wk^-1. For 3 of the soils, ¹⁴CO₂ increased with higher microbial biomass, while organisms in the deciduous woodland soil were more active in degrading DMSD than organisms in the other soils. After 30 weeks, most of the remaining ¹⁴C in the soil had moved from freely available water extractable to less available acid and base extractable fractions. Similar incubations with 2% plant litter showed extensive transfer of the DMSD into the litter layer. Incubations with a microbial inhibitor showed less DMSD degradation, while cold storage of soils almost completely stopped degradation. These results suggest that microbial degradation is an important mechanism of DMSD loss from soil.