Differential smoothing of time-series measurements to identify disturbances in performance and quantify animal response characteristics: An example using milk yield profiles in dairy cows

Recent advances in on-farm technology now provide us with multiple time-series of reliably measured indicators of animal performance and status at the level of the individual. This paper presents a smoothing approach for extracting biologically meaningful features from such time series using bovine milk yield data as an example. The main goal of this study was to illustrate how the method can be used to detect production deviations, extract quantifiable features of the deviation profiles, and thus provide means to examine hypotheses concerning the nature of the deviations. The effectiveness of the method was assessed with complete lactation curves from 47 Holstein cows. Within their lactations, the cows were each subjected to 1 nutritional challenge for a period of 4 d (their standard diet: a maize silage-based total mixed ration was diluted with 60% wheat straw), which provoked a decline in the milk yield in all cows. The challenge was imposed between the same calendar days for all cows. Thus, the cows were at different stages of lactation: early (n = 14), mid (n = 15), and late (n = 18). Each milk-yield curve was decomposed into components that capture the short-term deviations of the cow such as the response to the nutritional challenge and describe the phenotypic potential yield function of that cow throughout its lactation. The difference between the 2 components gives a measure of the milk loss. In all, 480 deviations were detected from the complete lactations of 47 cows. The milk loss provoked by the feeding challenge (n = 47) was significantly related to the milk yield immediately before the challenge (r = 0.86, P < 0.01). The correlation between the rate of recovery and milk loss was (r = 0.94, P < 0.01). Further, there was no significant slope (P > 0.1) to the relationship between the ratio (rate of recovery/milk loss) and days from calving, indicating that the force of recovery was unaffected by stage of lactation. These results suggest that differential smoothing can be a useful tool for quantifying biological disturbances in animal performance and for extracting features that relate to the potential and robustness of an animal.     

Plasma Cortisol Concentrations after CIDR Insertion in Beef Cows

The objective of this study was to show plasma cortisol concentration after treatment with controlled internal drug release (CIDR) in non‐suckling beef cows. On day 9 after oestrus, two cows were inserted with CIDR into the vagina for 24 h and the other two cows were treated as a control group. Four days later, the two control cows were treated with CIDR and the other two CIDR‐treated cows were used as controls. Cortisol concentrations were determined by ELISA in plasma samples collected before, during and after insertion of CIDR. There was a significant increase in plasma cortisol concentrations (p < 0.01) after insertion of CIDR. Mean (±SEM) plasma cortisol concentrations increased from 1.3 ± 0.4 to a peak of 8.8 ± 1.1 ng/ml at 5 h and then decreased to basal concentrations at 7 h after insertion of the device. In conclusion, the insertion of intra‐vaginal device causes an increase in plasma cortisol concentrations in beef cows, although the pathophysiological significance of the elevation of cortisol is not known.     

Adrenocortical Response in Cows after Intramuscular Injection of Long‐Acting Adrenocorticotropic Hormone (Tetracosactide Acetate Zinc Suspension)

The objectives of this study were first to show adrenocortical response to a long‐acting adrenocorticotropic hormone preparation (tetracosactide acetate zinc suspension) (ACTH‐Z) and its effect on adrenocortical function in beef cows ( Experiment 1 ) and second to apply the ACTH‐Z challenge in dairy cows based on cortisol concentrations in milk collected at routine milking ( Experiment 2 ). In Experiment 1 , four beef cows in luteal phase were challenged with ACTH‐Z, and plasma cortisol concentrations were determined for 48 h after the injection at 30‐min to 2‐h intervals. A rapid ACTH test was conducted 3 days before and 2 h after the completion of ACTH‐Z injection for 48 h to investigate the effect on adrenocortical function. Plasma cortisol concentrations increased significantly 30 min after ACTH‐Z injection (p < 0.001), and the high cortisol levels were maintained for approximately 10 h after the injection. In Experiment 2 , eight dairy cows were subjected to ACTH‐Z challenge 1–2 weeks and 4–5 weeks post‐partum. Blood and milk samples were taken at morning and afternoon milking. All the cows showed a significant increase in cortisol concentrations in plasma as well as in skim milk 8 h after ACTH‐Z injection 1–2 weeks and 4–5 weeks post‐partum (p < 0.001). There was a significant correlation between plasma and skim milk cortisol concentrations 8 h after ACTH‐Z challenge (r = 0.74, p < 0.001). The results obtained in this study suggest that elevated levels of plasma cortisol are maintained for approximately 10 h after ACTH‐Z treatment without adverse effect on adrenocortical function and a long‐acting ACTH‐Z challenge based on cortisol concentrations in milk, which were collected at the morning and the afternoon milking, can be a useful tool to monitor adrenocortical function in cows.     

Involvement of PAPP‐A and IGFR1 in Cystic Ovarian Disease in Cattle

Cystic ovarian disease (COD) is one of the main causes of infertility in dairy cattle. It has been shown that intra‐ovarian factors, such as members of the insulin‐like growth factor (IGF) system, may contribute to follicular persistence. The bioavailability of IGF to initiate its response by binding to specific receptors (IGFRs) depends on interactions with related compounds, such as pregnancy‐associated plasma protein A (PAPP‐A). The aim of this study was to determine IGFR1 and PAPP‐A expression both in follicles at different stages of development and in cysts, to evaluate the roles in the etiopathogenesis of COD in cattle. The mRNA expression of PAPP‐A was higher in granulosa cells of large tertiary follicles than in cysts, whereas the protein PAPP‐A present in the follicular fluid from these follicles showed no differences. Although no PAPP‐A mRNA expression was detected in smaller tertiary follicles, in their follicular fluid, this protease was detected in lesser concentration than in cysts. The mRNA expression of IGFR1 was lower in granulosa cells from cystic follicles than in those from tertiary ones. However, the protein expression of this receptor presented the highest levels in cystic structures, probably to increase the possibility of IGF response. The data obtained would indicate that animals with COD have an altered regulation of the IGF system in the ovary, which could be involved in the pathogenesis of this disease in cattle.     

Acute small intestinal obstruction associated with Parascaris equorum infection in young horses: 25 cases (1985–2004)

AIMS: To retrospectively evaluate the medical and surgical records of horses with acute small intestinal obstructions associated with Parascaris equorum infection; to describe the gastrointestinal lesions; and to determine the outcome of cases with such lesions.

METHODS: Records of 25 horses with acute small intestinal obstruction associated with P. equorum between 1985 and 2004 were reviewed to determine signalment, history, physical examination, surgical or post-mortem findings, and outcome.

RESULTS: All horses except one were less than 12 months old. Standardbreds were over-represented in the population studied. Sixteen horses (72%) had been administered anthelmintics, including pyrantel (n=8), ivermectin (n=7), and trichlorphon (n=1), within 24 h prior to the onset of colic. Of the 25 cases reviewed, 16 had simple obstructive ascarid impactions (SOAIs), and nine had complicated obstructive ascarid impaction (COAI) including volvulus (n=6) or intussusception (n=3), both concurrent with ascarid impaction of the small intestine. Short-term survival (discharge from hospital) occurred in 79% of horses treated for SOAI, and was 64% for all horses. Long-term survival (>1 year) occurred in 33% of horses with SOAI, and the overall long-term survival was 27% for all horses. Formation of adhesions was the most frequent finding associated with death for horses that did not survive long-term.

CONCLUSIONS AND CLINICAL RELEVANCE: The incidence of anthelmintic treatment within 24 h of the onset of colic in this study population (72%) was higher than that previously reported. Resistance of P. equorum to ivermectin recently reported in Ontario may be associated with increased ascarid burdens, predisposing horses to ascarid impaction. The long-term survival of these horses was better than that reported previously.     

Robustness scores in fattening pigs based on routinely collected phenotypes: determination and genetic parameters

The objective was to determine operational proxies for robustness based on data collected routinely on farm that allow phenotyping of these traits in fattening pigs, and to estimate their genetic parameters. A total of 7,256 pigs, from two Piétrain paternal lines (Pie and Pie NN), were tested at the AXIOM boar testing station (Azay-sur-Indre, France) from 2019 to 2021. During the fattening period (from 75 to 150 d of age), individual performance indicators were recorded (growth, backfat, loin depth, feed intake, and feed conversion ratio [FCR]) together with indicators such as insufficient growth, observable defect, symptoms of diseases, and antibiotic and anti-inflammatory injections. These indicators were combined into three categorical robustness scores: R1, R2, and R3. Genetic parameters were estimated using an animal linear model. The robustness score R2 (selectable or not selectable animal) that combined information from status at testing and mortality had the highest heritability estimates of 0.08 ± 0.03 for Pie NN line and a value of 0.09 ± 0.02 for Pie line, compared with traits R1 and R3. The score R3 that combines information from the score R2 with antibiotic and anti-inflammatory injections presented slightly lower heritability estimates (0.05 ± 0.02 to 0.07 ± 0.03). Genetic correlations between R2 and R3 were high and favorable (0.93 ± 0.04 to 0.95 ± 0.03) and R2 and R3 can be considered identical with regard to the confidence interval. These two robustness scores were also highly and favorably genetically correlated with initial body weight and average daily gain, and unfavorably correlated with daily feed intake (ranging from 0.73 ± 0.06 to 0.90 ± 0.08). Estimates of genetic correlations of R2 and R3 with backfat depth and raw FCR (not standardized between starting and finishing weights) were moderate and unfavorable (0.20 ± 0.13 to 0.46 ± 0.20). A part of these genetic correlations, that are of low precision due to the number of data available, have to be confirmed on larger datasets. The results showed the interest of using routine phenotypes collected on farm to build simple robustness indicators that can be applied in breeding.     

Acute myelogenous leukaemia in a mare

SUMMARY: A 5-year-old Thoroughbred mare presented with a 4 week history of weight loss, fever and leukopenia. Rectally, a large active foetus, thickened spleen and an abdominal mass were palpated. Leukopenia, mild anaemia, marked thrombocytopenia and hyperfibrinogenaemia were found. Cytology and cytochemical staining of a bone marrow aspirate supported a diagnosis of acute myelogenous leukaemia. The mare deteriorated despite medical therapy and was humanely euthanased.