Taming of a poison: biosynthesis of the NiFe-hydrogenase cyanide ligands

NiFe-hydrogenases have an Ni-Fe site in which the iron has one CO and two CN groups as ligands. Synthesis of the CN ligands requires the activity of two hydrogenase maturation proteins: HypF and HypE. HypF is a carbamoyltransferase that transfers the carbamoyl moiety of carbamoyladenylate to the COOH-terminal cysteine of HypE and thus forms an enzyme-thiocarbamate. HypE dehydrates the S-carbamoyl moiety in an adenosine triphosphate-dependent process to yield the enzyme thiocyanate. Chemical model reactions corroborate the feasibility of this unprecedented biosynthetic route and show that thiocyanates can donate CN to iron. This finding underscores a striking parallel between biochemistry and organometallic chemistry in the formation of an iron-cyano complex.     

Nuclear pore complex structure and dynamics revealed by cryoelectron tomography

Nuclear pore complexes (NPCs) are gateways for nucleocytoplasmic exchange. To analyze their structure in a close-to-life state, we studied transport-active, intact nuclei from Dictyostelium discoideum by means of cryoelectron tomography. Subvolumes of the tomograms containing individual NPCs were extracted in silico and subjected to three-dimensional classification and averaging, whereby distinct structural states were observed. The central plug/transporter (CP/T) was variable in volume and could occupy different positions along the nucleocytoplasmic axis, which supports the notion that it essentially represents cargo in transit. Changes in the position of the CP/T were accompanied by structural rearrangements in the NPC scaffold.     

Dynamic optimization of odor representations by slow temporal patterning of mitral cell activity

Mitral cells (MCs) in the olfactory bulb (OB) respond to odors with slow temporal firing patterns. The representation of each odor by activity patterns across the MC population thus changes continuously throughout a stimulus, in an odor-specific manner. In the zebrafish OB, we found that this distributed temporal patterning progressively reduced the similarity between ensemble representations of related odors, thereby making each odor's representation more specific over time. The tuning of individual MCs was not sharpened during this process. Hence, the individual responses of MCs did not become more specific, but the odor-coding MC assemblies changed such that their overlap decreased. This optimization of ensemble representations did not occur among olfactory afferents but resulted from OB circuit dynamics. Time can therefore gradually optimize stimulus representations in a sensory network.     

Microbial reefs in the Black Sea fueled by anaerobic oxidation of methane

Massive microbial mats covering up to 4-meter-high carbonate buildups prosper at methane seeps in anoxic waters of the northwestern Black Sea shelf. Strong 13C depletions indicate an incorporation of methane carbon into carbonates, bulk biomass, and specific lipids. The mats mainly consist of densely aggregated archaea (phylogenetic ANME-1 cluster) and sulfate-reducing bacteria (Desulfosarcina/Desulfococcus group). If incubated in vitro, these mats perform anaerobic oxidation of methane coupled to sulfate reduction. Obviously, anaerobic microbial consortia can generate both carbonate precipitation and substantial biomass accumulation, which has implications for our understanding of carbon cycling during earlier periods of Earth's history.     

Aeration effects on CO2, N2O,and CH4 emission and leachate composition of a forest soil

The availability of O₂ is one of the most important factors controlling the chemical and biological reactions in soils. In this study, the effects of different aeration conditions on the dynamics of the emission of trace gases (CO₂, N₂O, CH₄) and the leachate composition (NO₃^‐, DOC, Mn, Fe) were determined. The experiment was conducted with naturally structured soil columns (silty clay, Vertisol) from a well aerated forest site. The soil monoliths were incubated in a microcosm system at different O₂ concentrations (0, 0.001, 0.005, 0.01, 0.05, and 0.205 m³ m^‐3 in the air flow through the headspace of the microcosms) for 85 days. Reduced O₂ availability resulted in a decreased CO₂ release but in increased N₂O emission rates. The greatest cumulative N₂O emissions (= 1.6 g N₂O‐N m^‐2) were observed at intermediate O₂ concentrations (0.005 and 0.01 m³ m^‐3) when both nitrification and denitrification occurred simultaneously in the soil. Cumulative N₂O emissions were smallest (= 0.05 g N₂O‐N m^‐2) for the aeration with ambient air (O₂ concentration: 0.205 m³ m^‐3), although nitrate availability was greatest in this treatment. The emission of CH₄ and leaching of Mn and Fe were restricted to the soil columns incubated under completely anoxic conditions. The sequence of the reduction processes under completely anoxic conditions complied with the thermodynamic theory: soil nitrate was reduced first, followed by the reduction of Mn(IV) and Fe(III) and finally CO₂ was reduced to CH₄. The re‐aeration of the soil columns after 85 days of anoxic incubation terminated the production of CH₄ and dissolved Fe and Mn in the soil but strongly increased the emission rates of CO₂ and N₂O and the leaching of NO₃^‐ probably because of the accumulation of DOC and NH₄⁺ during the previous anoxic period.     

European emission data with high temporal and spatial resolution

The estimation of acidic deposition strongly depends on the availability of accurate emission data. The atmospheric models, that calculate concentrations and depositions of pollutants, need data in a high temporal resolution (e.g. daily, 6-hourly or even hourly data). However, although some progress has been achieved concerning annual emission data for Europe (e.g. CORINAIR 90), only very little information is available about the temporal variation of these emissions during a year. Therefore, within the EUROTRAC-GENEMIS project special emphasis was laid on the development of methods to generate emissions with a high temporal and spatial resolution. As results the temporal and spatial distribution of SO₂- and NO_X-emissions are shown. The results indicate, that the emissions vary considerably over time and that the use of simple patterns for the temporal disaggregation is not sufficient for modelling and assessment of acidic deposition.     

Prediction of deoxynivalenol and zearalenone concentrations in Fusarium graminearum inoculated backcross populations of maize by symptom rating and near‐infrared spectroscopy

Gibberella ear rot (GER) caused by Fusarium graminearum is a destructive disease in maize of temperate regions resulting in yield reduction and contamination by the mycotoxins deoxynivalenol (DON) and zearalenone (ZON). We wanted to analyse whether prediction of DON and ZON concentrations is feasible either by GER severity ratings or by near‐infrared spectroscopy (NIRS). We analysed 80 and 102 lines developed by backcrossing doubled‐haploid lines from segregating populations to the resistant and susceptible parent, respectively, by artificial infection at three locations in Germany and France. Both backcross (BC) populations differed substantially in their means for all traits with significant (P < 0.01) genotypic variances. DON and ZON concentrations measured by immunotests were significantly (P < 0.01) correlated with each other and with GER severity within each BC population (0.6 ≤ r ≤ 0.9, P < 0.01). DON concentration measured by immunotest and NIRS significantly correlated (r ≈ 0.9, P < 0.01). In conclusion, DON and ZON concentrations could be reliably predicted by GER severity. Additional NIRS analysis of DON concentration might be useful for the positively selected fraction.