Comment on "A G protein coupled receptor is a plasma membrane receptor for the plant hormone abscisic acid"

Liu et al. (Reports, 23 March 2007, p. 1712) reported that the Arabidopsis thaliana gene GCR2 encodes a seven-transmembrane, G protein-coupled receptor for abscisic acid. We argue that GCR2 is not likely to be a transmembrane protein nor a G protein-coupled receptor. Instead, GCR2 is most likely a plant homolog of bacterial lanthionine synthetases.     

Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps

The genome organizations of eight phylogenetically distinct species from five mammalian orders were compared in order to address fundamental questions relating to mammalian chromosomal evolution. Rates of chromosome evolution within mammalian orders were found to increase since the Cretaceous-Tertiary boundary. Nearly 20% of chromosome breakpoint regions were reused during mammalian evolution; these reuse sites are also enriched for centromeres. Analysis of gene content in and around evolutionary breakpoint regions revealed increased gene density relative to the genome-wide average. We found that segmental duplications populate the majority of primate-specific breakpoints and often flank inverted chromosome segments, implicating their role in chromosomal rearrangement.     

Association of TALS developmental disorder with defect in minor splicing component U4atac snRNA

The spliceosome, a ribonucleoprotein complex that includes proteins and small nuclear RNAs (snRNAs), catalyzes RNA splicing through intron excision and exon ligation to produce mature messenger RNAs, which, in turn serve as templates for protein translation. We identified four point mutations in the U4atac snRNA component of the minor spliceosome in patients with brain and bone malformations and unexplained postnatal death [microcephalic osteodysplastic primordial dwarfism type 1 (MOPD 1) or Taybi-Linder syndrome (TALS); Mendelian Inheritance in Man ID no. 210710]. Expression of a subgroup of genes, possibly linked to the disease phenotype, and minor intron splicing were affected in cell lines derived from TALS patients. Our findings demonstrate a crucial role of the minor spliceosome component U4atac snRNA in early human development and postnatal survival.     

Grass-dominated vegetation, not species-diverse natural savanna, replaces degraded tropical forests on the southern edge of the Amazon Basin

Changes in land-uses, fire regimes, and climate are expected to promote savanna expansion in the Amazon Basin, but most studies that come to this conclusion fail to define “savanna” clearly or imply that natural savannas of native species will spread at the expense of forest. Given their different conservation values, we sought to differentiate between species-diverse natural savannas and other types of fire-maintained grass-dominated vegetation that replaced tropical forests between 1986 and 2005 in 22,500 km² of eastern lowland Bolivia. Analysis of Landsat TM and CBERS-2 satellite imagery revealed that, in addition to 1200 km² (7.1%) of deforestation for agriculture and planted pastures, 1420 km² (8.4%) of forest was replaced by derived savannas. Sampling in 2008 showed that natural savannas differed from forest-replacing derived savannas floristically, in soil fertility, and in fuel loads. Natural savannas typically occurred on sandy, acidic, nutrient-poor soils whereas most derived savannas were on comparatively fertile soils. Fuel loads in derived savannas were twice those of natural savannas. Natural savannas supported a diversity of grass species, whereas derived savannas were usually dominated by Guadua paniculata (native bamboo), Urochloa spp. (exotic forages), Imperata brasiliensis (native invasive), Digitaria insularis (native ruderal), or the native fire-adapted herb Hyptis suaveolens (Lamiaceae). Trees in derived savannas were forest species (e.g., Anadenanthera colubrina) and fire-tolerant palms (Attalea spp.), not thick-barked species characteristic of savanna environments (e.g., Curatella americana). In addressing tropical vegetation transitions it is clearly important to distinguish between native species-diverse ecosystems and novel derived vegetation of similar structure.