Large wood abundance,distribution and mobilization in a third order Coastal mountain range river system,southern Chile

Large wood (LW) abundance, longitudinal distribution and mobilization were studied in the Vuelta de la Zorra channel draining a third order catchment located in the Coastal mountain range of southern Chile. Seventy-five percent of the 586.8 ha study catchment area is covered by evergreen native rainforests, 24% by Eucalyptus nitens plantations and the remaining 1% are different sites were native tree and shrub species are regenerating in areas that were prepared for forest replacement in the late 1980s but finally left unplanted. In a segment, 1557 m in length, surveyed between November 2008 and February 2009, a total of 484 pieces representing 181 m³ of LW were measured. Using bankfull width and length this volume corresponds to 109 m³ ha⁻¹ or 11.6 m³ 100 m⁻¹. LW was distributed along the channel in correlation with bankfull width. The channel segment was re-surveyed in December 2009 and we found that after one winter season 12% of the LW were transported downstream the river channel and 9 new wood elements were recruited. The LW traveled distance and traveled distance/piece diameter ratio decreased with increasing piece length/mean bankfull ratio. These results contribute to understand the complexity of LW abundance, mobilization and recruitment processes, and their effects on channel morphology, sediment routing and ecology in Chilean catchments.     

Development of specific primers for cpSSR analysis in caper,olive and grapevine using consensus chloroplast primer pairs

Chloroplast SSR (cpSSR) markers have demonstrated utility in studying genetic relationships. DNA sequence information of the chloroplast genome is necessary for the development of cpSSR primer pairs. To overcome this limitation, “consensus” primers have been developed to amplify the homologous regions in plants where chloroplast sequences are not available. However, 80% Pinus thunbergi and Nicotiana tabacum developed “consensus” primers tested with grapevine, olive and caper showed multi-locus patterns. The presence of multi-locus patterns requires the use of agarose gel electrophoresis followed from isolation and sequencing of the bands. Herein, a PCR-strategy is proposed to construct specific cpSSR primer pairs without genomic sequence information, giving single-band amplifications that can be directly sequenced. Twelve new specific cpSSR primer pairs were developed for Capparis spinosa L., Olea europea L. and Vitis vinifera L. PCR products were sequenced to confirm the presence of microsatellite sequences, and their transportability was tested on six V. vinifera cultivars. Both single-nucleotide polymorphisms and polymorphic cpSSR were observed in the six grapevine cultivars using the specific cpSSR primers.     

Genetic diversity of Grapevine rupestris stem pitting-associated virus isolates from Tunisian grapevine germplasm

Grapevine rupestris stem pitting-associated virus (GRSPaV) is one of the most widespread grapevine viruses and is transmitted mainly by grafting. GRSPaV presence was tested in 487 samples representative of the Tunisian grapevine germplasm (including autochthonous, table, wine, wild grape, and rootstock varieties) from different Tunisian regions. GRSPaV infection was detected in 51.3% of samples from different Tunisian regions, among which the table grapevine cultivars were the most commonly infected (68.7%). Genetic variability of GRSPaV isolates from wild and cultivated grapevines was assessed by sequencing the partial capsid protein (CP) gene of 19 Tunisian isolates and 1 Italian GRSPaV isolate from Sicily, and the partial RNA-dependent RNA polymerase (RdRp) gene of 13 Tunisian GRSPaV isolates. According to phylogenetic analysis of CP nucleotide sequences obtained in this study and sequences retrieved from GenBank, Tunisian isolates fell into four phylogenetic groups already described (I, II, III, and IV) and two new phylogenetic groups (VI and VIII). Phylogenetic analysis of the partial RdRp gene revealed that Tunisian isolates of GRSPaV are distributed into four phylogroups. This study highlights the importance of regular monitoring of GRSPaV infections in Tunisia, with special regard to those grapevine accessions employed in conservation and selection programmes. In particular, the presence of new GRSPaV genetic variants and infection of wild grapevines must be taken into account in order to choose a correct control strategy.     

The plant functional traits that explain species occurrence across fragmented grasslands differ according to patch management,isolation, and wetness

Context

Landscape fragmentation significantly affects species distributions by decreasing the number and connectivity of suitable patches. While researchers have hypothesized that species functional traits could help in predicting species distribution in a landscape, predictions should depend on the type of patches available and on the ability of species to disperse and grow there.

Objectives

To explore whether different traits can explain the frequency of grassland species (number of occupied patches) and/or their occupancy (ratio of occupied to suitable patches) across a variety of patch types within a fragmented landscape.

Methods

We sampled species distributions over 1300 grassland patches in a fragmented landscape of 385 km² in the Czech Republic. Relationships between functional traits and species frequency and occupancy were tested across all patches in the landscape, as well as within patches that shared similar management, wetness, and isolation.

Results

Although some traits predicting species frequency also predicted occupancy, others were markedly different, with competition- and dispersal-related traits becoming more important for occupancy. Which traits were important differed for frequency and occupancy and also differed depending on patch management, wetness, and isolation.

Conclusions

Plant traits can provide insight into plant distribution in fragmented landscapes and can reveal specific abiotic, biotic, and dispersal processes affecting species occurrence in a patch type. However, the importance of individual traits depends on the type of suitable patches available within the landscape.

     

Modelling giant red shrimp larval dispersal in the Sardinian seas: density and connectivity scenarios

The connectivity and three‐dimensional (3D) dispersion of the larvae of giant red shrimp, potentially released from known spawning areas along the Sardinia slope in the western Mediterranean Sea, were assessed using Lagrangian simulations forced by a 3D submesoscale permitting a regional ocean model. Biophysical simulations using the hydrodynamic conditions of the year 2012 were run to track propagules released from known spawning areas during the spawning period (May to September). Passive transport (PT) and vertical migration (VM) scenarios were tested, each with two possible pelagic larval durations (PLDs) of 21 or 42 days. Dispersion of propagules in the PT and VM scenarios differed in terms of travelled distance, export out of the domain (larger for VM), and depth distribution (shallower and bimodal for VM due to the larger variability of encountered currents). Connectivity patterns were investigated among eight release areas, and four predetermined Eco‐Regions, and results showed strong connectivity among the North‐Western (NW), Western (W), and Southern (S) regions of Sardinia, whereas the Eastern region was more segregated. Differences in connectivity patterns among scenarios were related mainly to the tendency of greater retention of propagules in the release area for the PT scenarios. This finding, together with existing hypotheses of vertical migration likely occurring during first egg‐larval phases, suggest that the VM scenarios are the most probable of the two hypotheses tested. Strong connectivity between the W and S sides of Sardinia and the relative isolation of the E side could have significant implications for the protection of this important resource.     

First implementation of a Gadget model for the analysis of hake in the Mediterranean

An age-length structured model was built for European hake Merluccius merluccius in the central Mediterranean Sea using Gadget. This analytical framework allowed to integrate multiple sources of information, including fisheries-dependent and fisheries-independent data, collected at different scales and aggregation levels. The model includes the two main fisheries targeting hake in the area, the trawl and the gillnet fisheries, and account for differences in their selectivity and effort. Alternative models were used for testing different assumptions on recruitment and growth. The model is then used to predict the main trajectory of the stock during the next years and to evaluate the potential effects of implementing closed areas management scenarios in the hake nurseries as a specific tool to reduce fishing mortality on recruits. The modelling framework presented performed successfully also in a commercial landing data limited context, common for the Mediterranean. Our results provide statistical support for fast growth and multiple recruitment events assumptions. Including both these key features represent an unprecedented improvement of modelling hake population dynamics in the Mediterranean. We found that the reduction in the fishing effort that characterized the fisheries in the study area during the last few years, coupled with fast recovery abilities of the hake stock, has the potentiality to allow a moderate increase of the stock during the next years. Interestingly, our simulations show that the positive effects which might be expected from protecting hake nursery grounds are only marginally related to a reduction in hake recruits fishing mortality. Although our model relies on assumptions and surely represents an over-simplification of the real world, it still contributed to improve our understanding of the temporal dynamics of one of the most valuable fish stocks in the central Mediterranean.     

Simultaneous determination of ochratoxin A and cyclopiazonic,mycophenolic, and tenuazonic acids in cornflakes by solid-phase microextraction coupled to high-performance liquid chromatography

A solid-phase microextraction (SPME) method, coupled to liquid chromatography with diode array UV detection (LC-UV/DAD), for the simultaneous determination of cyclopiazonic acid, mycophenolic acid, tenuazonic acid, and ochratoxin A is described. Chromatographic separation was achieved on a propylamino-bonded silica gel stationary phase using acetonitrile/methanol/ammonium acetate buffer mixture (78:2:20, v/v/v) as mobile phase. SPME adsorption and desorption conditions were optimized using a silica fiber coated with a 60 microm thick polydimethylsiloxane/divinylbenzene film. Estimated limits of detection and limits of quantitation ranged from 3 to 12 ng/mL and from 7 to 29 ng/mL, respectively. The method has been applied to cornflake samples. Samples were subjected to a preliminary short sonication in MeOH/2% KHCO(3) (70:30, v/v); the mixture was evaporated to near dryness and reconstituted in 1.5 mL of 5 mM phosphate buffer (pH 3) for SPME followed by LC-UV/DAD. The overall procedure had recoveries (evaluated on samples spiked at 200 ng/g level) ranging from 74 +/- 4 to 103 +/- 9%. Samples naturally contaminated with cyclopiazonic and tenuazonic acids were found; estimated concentrations were 72 +/- 9 and 25 +/- 6 ng/g, respectively.     

Maize Prolamins Resistant to Peptic-tryptic Digestion Maintain Immune-recognition by IgA from Some Celiac Disease Patients

Maize is used as an alternative to wheat to elaborate foodstuffs for celiac patients in a gluten-free diet. However, some maize prolamins (zeins) contain amino acid sequences that resemble the wheat gluten immunodominant peptides and their integrity after gastrointestinal proteolysis is unknown. In this study, the celiac IgA-immunoreactivity to zeins from raw or nixtamalized grains, before and after peptic/tryptic digestion was evaluated and their possible immunogenicity was investigated by in silico methods. IgA from some celiac patients with HLA-DQ2 or DQ8 haplotypes recognized two alpha-zeins even after peptic/tryptic proteolysis. However, digestion affected zeins after denaturation, reduction, and alkylation, used for identification of prolamins as alpha-zein A20 and A30 by MS/MS sequencing. An in silico analysis indicated that other zeins contain similar sequences, or sequences that may bind even better to the HLA-DQ2/DQ8 molecules compared to the already identified ones. Results concur to indicate that relative abundance of these zeins, along with factors affecting their resistance to proteolysis, may be of paramount clinical relevance, and the use of maize in the formulation and preparation of gluten-free foods must be reevaluated in some cases of celiac disease.     

First record of Ektaphelenchoides pini associated with Ips sexdentatus on Pinus nigra laricio in Italy

In February 2015, an unexpected windstorm downed five hectares of a European black pine Pinus nigra subsp. laricio forest formation located close to Vallombrosa, Florence (Central Italy). In the following spring, an extensive survey was conducted in the area. Felled trees, stumps and all the suitable plant material were screened for the presence of the pinewood nematode (PWN), Bursaphelenchus xylophilus, by sampling wood and bark. Bark beetles were then collected from the gallery systems on the inner side of bark samples and observed in the laboratory. The following bark beetles were morphologically identified: Ips sexdentatus, Orthotomicus erosus, O. laricis and Pityogenes bidentatusa. The dissection of Ips sexdentatus allowed the extraction of numerous nematodes that were morphologically and molecularly identified as Ektaphelenchoides pini. Conversely, only few nematode specimens were isolated from either pine bark or wood. These individuals could be only molecularly identified and belonged to an undescribed nematode taxon. Even though no PWN was recorded in the investigated sites, our survey allowed the detection of a new association between E. pini and I. sexdentatus on P. nigra.     

Conservation of newt guilds in an agricultural landscape of Belgium: the importance of aquatic and terrestrial habitats

• 1. Amphibians are declining worldwide in response to local and global pressures. Pond‐breeding species are particularly vulnerable to environmental change because they rely on two components of the landscape: aquatic and terrestrial habitats. Agricultural practices are changing rapidly at world and local scales. As a consequence, farm ponds and their surrounding terrestrial landscapes will probably be affected.
• 2. This study investigated the main habitat determinants for the occurrence of four species of newts (genus Triturus) inhabiting the Pays de Herve, a rural area in Belgium. Newt occurrence was determined for 258 ponds and the effect of habitat on distribution determinants was evaluated using generalized linear models.
• 3. Newts were found in 42% of the ponds. Contrary to expectations, the distribution of newts was not positively associated with a high density of ponds. However, a low occurrence of newts and the low water depth of many ponds suggest a low quality of habitats. Proximity to forest, deep water, and an absence of fish in ponds are factors that significantly favour newts, but terrestrial habitat requirements vary among species.
• 4. These results indicate the necessity of maintaining both forest and meadow patches in close proximity to ponds inhabited by newts, and of controlling fish introduction in those ponds. These findings stress the importance of conservation and management of terrestrial and aquatic habitats for maintaining amphibian diversity.

Copyright © 2007 John Wiley & Sons, Ltd.