Global vulnerability of soil ecosystems to erosion

Landscape Ecology - Soil erosion is one of the main threats driving soil degradation across the globe with important impacts on crop yields, soil biota, biogeochemical cycles, and ultimately human...     

Management criteria for Ficus insipida Willd. (Moraceae) in Amazonian white-water floodplain forests defined by tree-ring analysis

Ficus insipida Willd. (Moraceae) is a fast growing tree species of early successional stages in the Amazonian nutrient-rich white-water floodplains (várzea). The species is one of the most economically important low-density wood species in the community-based forest management project in the Mamirauá Sustainable Development Reserve (MSDR) in Central Amazonia, where timber species are managed using a polycyclic selection system with a minimum logging diameter (MLD) of 50 cm and a cutting cycle of 25 years. In this study we analyze the floristic composition, stand structure and forest regeneration of a natural 20 year-old stand at an early successional stage and we model tree growth of diameter, height and volume of F. inspida based on tree-ring analysis to define management criteria. The volume growth model indicates that the preferred period for logging should be at a tree age of 17 years when the current annual volume increment peaks. This age corresponds to a diameter of 55 cm, which would be an appropriate MLD.     

Plasticity of reproductive allocation of a woody species (Ulex europaeus) in response to variation in resource availability

Context

While many woody perennials grow and reproduce in varying environments, their ability to modify their reproductive allocation under varying resource availability is unclear.

Aims

This study aimed to demonstrate the occurrence of plasticity of reproductive allocation in a pioneer woody species (Ulex europaeus).

Methods

We studied seed production in 144 plants under different irradiance and population densities. We measured their basal area, their whole shoot biomass and photosynthetic biomass, and their reproductive output (number of fruits per individual and number of seeds per fruit).

Results

We found that newly produced photosynthetic biomass was influenced by environmental variation, which in turn determined its reproductive output. In addition, in low light conditions investment in reproduction was more reduced than investment in growth indicating plasticity of reproductive allocation.

Conclusion

These results provide the first evidence for plasticity of reproductive allocation of a woody plant. It may lead to the ability of this pioneer species to survive and to continue to reproduce even at low rates in non-optimal shady habitats and to maintain a non-empty seed bank in forest systems with long unfavourable periods between two disturbances.     

Shade trees: a determinant to the relative success of organic versus conventional coffee production

Greater understanding of the influences on long-term coffee productivity are needed to develop systems that are profitable, while maximizing ecosystem services and lowering negative environmental impacts. We examine a long-term experiment (15 years) established in Costa Rica in 2000 and compare intensive conventional (IC) coffee production under full sun with 19 agroforestry systems combining timber and service tree species with contrasting characteristics, with conventional and organic managements of different intensities. We assessed productivity through coffee yield and coffee morphological characteristics. IC had the highest productivity but had the highest yield bienniality; in the agroforestry systems productivity was similar for moderate conventional (MC) and intensive organic (IO) treatments (yield 5.3 vs. 5.0 t ha^?1 year^?1). Significantly lower yields were observed under shade than full sun, but coffee morphology was similar. Low input organic production (LO) declined to zero under the shade of the non-legume timber tree Terminalia amazonia but when legume tree species were chosen (Erythrina poepiggiana, Chloroleucon eurycyclum) LO coffee yield was not significantly different than for IO. For the first 6 years, coffee yield was higher under the shade of timber trees (Chloroleucon and Terminalia), while in the subsequent 7 years, Erythrina systems were more productive; presumably this is due to lower shade covers. If IC full sun plantations are not affordable or desired in the future, organic production is an interesting alternative with similar productivity to MC management and in LO systems incorporation of legume tree species is shown to be essential.     

Competition for nitrogen in an unfertilized intercropping system: The case of an association of grapevine and grass cover in a Mediterranean climate

Cover cropping is currently increasing in vineyards as it provides solutions to some of the problems encountered in vine growing. However, its development is still hampered in Mediterranean regions because of fears of severe competition for water. Recent studies have shown that soil resources other than water may also be restrictive, and particularly nitrogen. Over a three-year period, the effect of introducing a cover crop was studied with respect to the temporal and spatial changes to nitrogen dynamics in a Mediterranean vineyard. The experiment compared the impact of three different types of soil cover management on nitrogen dynamics, and particularly on soil nitrogen mineralization which is the principal source of inorganic nitrogen in situations with no application of N fertilizers which are frequent in viticulture.This experiment provided evidence that the presence of an intercrop significantly reduced nitrogen accumulation in aerial parts of grapevine during the year due to competition for soil resources. This reduction varied markedly between years and treatments, and was more pronounced during dry years. The competition for nitrogen was direct as intercrop deprived grapevine of soil nitrogen beneath the inter-row and caused grapevine uptake to be higher beneath the row. In deep soils, a grapevine can adapt its root system in order to access deeper water resources, but it then partially abandons the mineralization zone containing most inorganic nitrogen. Competition for nitrogen was less marked with a temporary cover crop than with a permanent one, because of the shorter period of uptake with the former and the time needed for an annual cover crop to develop its root system each year. Intercrop also competed indirectly for nitrogen with grapevine as it took up soil water and made inorganic nitrogen less mobile and accessible to grapevine. Intercrop markedly decreased soil nitrogen mineralization. Although it did not significantly affect organic matter characteristics or soil temperature, it clearly modified the water regime. Indeed, under either temporary or perennial cover crops, the upper soil layers dried more rapidly than when there was only evaporation from bare soil. Consequently, nitrogen mineralization decreased faster with intercropped treatments and halted prematurely during the summer.The earliness of the reduction in nitrogen accumulation in intercropped vineyards also suggested that a lower level of nitrogen transfer to perennial reserves was involved. Indeed, grass cover grows and competes for nitrogen during the autumn which is a favourable period for nitrogen accumulation in wood reserves. Although better water infiltration was observed in the presence of a cover crop (notably in the autumn), the favourable conditions for nitrogen mineralization were propitious for grass cover growth and uptake. Consequently, intercrop reduced grapevine growth of the year but also the potential growth for the next year by decreasing grapevine nitrogen perennial reserves.     

Controlled vocabularies for plant anatomical parts optimized for use in data analysis tools and for cross-species studies

Background

It is generally accepted that controlled vocabularies are necessary to systematically integrate data from various sources. During the last decade, several plant ontologies have been developed, some of which are community specific or were developed for a particular purpose. In most cases, the practical application of these ontologies has been limited to systematically storing experimental data. Due to technical constraints, complex data structures and term redundancies, it has been difficult to apply them directly into analysis tools.

Results

Here, we describe a simplified and cross-species compatible set of controlled vocabularies for plant anatomy, focussing mainly on monocotypledonous and dicotyledonous crop and model plants. Their content was designed primarily for their direct use in graphical visualization tools. Specifically, we created annotation vocabularies that can be understood by non-specialists, are minimally redundant, simply structured, have low tree depth, and we tested them practically in the frame of Genevestigator.

Conclusions

The application of the proposed ontologies enabled the aggregation of data from hundreds of experiments to visualize gene expression across tissue types. It also facilitated the comparison of expression across species. The described controlled vocabularies are maintained by a dedicated curation team and are available upon request.

     

A novel zwitterionic anthocyanin from evergreen blackberry (Rubus laciniatus Willd.).

A novel zwitterionic anthocyanin was isolated from evergreen blackberry (Rubus laciniatus Willd.) and structurally characterized as cyanidin 3-dioxalylglucoside. During short-term storage in acidified methanol, methyl esterification of the carboxyl group of the terminal oxalyl unit occurred, providing additional information for structural elucidation. Until now, oxalic acid as an acyl moiety of anthocyanins has been reported only in orchid flowers (Orchidaceae) but never in fruits or in the Rosaceae. This is the first report of an anthocyanin diacylated with oxalic acid, establishing a more widespread occurrence of anthocyanins substituted with aliphatic acids than hitherto believed.