First isolation and characterisation of Encephalitozoon cuniculi from a free-ranging rat (Rattus norvegicus)

The microsporidian species Encephalitozoon cuniculi can infect a wide variety of mammals including man. It is a common parasite in rabbits and several sporadic infections in laboratory rats have been described. Based on molecular data three E. cuniculi strains have been identified. Here we describe the first in vitro propagation of E. cuniculi, which was isolated from a free-ranging rat (Rattus norvegicus). The rat was one of three seropositive animals among 23 rats captured in the city of Zurich. The new isolate was further characterised as strain II ("mouse"-strain) based on the rDNA internal transcribed spacer sequence. Western blot analysis of this isolate revealed slight differences to other available strain II isolates originating from laboratory mice and farmed blue foxes. The new isolate caused disseminated infection in liver and lung upon oral inoculation of Brown Norway (BN) rats and was transmitted to sentinel rats. This rat-adapted isolate will be valuable to study the pathogenesis of Encephalitozoon infections in the rat model.     

Phylogeography,genetic stocks,and conservation implications for an Australian endemic marine turtle

1. Identification of the geographic extent of population boundaries, the distribution of genetic lineages, and the amount of genetic exchange among breeding groups is needed for effective conservation of vulnerable marine migratory species. This is particularly true of the flatback turtle (Natator depressus), which only breeds in Australia but has extensive migrations that can include international waters.
2. This study investigated the phylogeography and genetic structure among 17 flatback turtle rookeries across their range by sequencing an 810 bp portion of the mitochondrial DNA in 889 samples and genotyping 10 microsatellite loci in 598 samples.
3. There was low phylogenetic divergence among haplotypes and evidence of recent population expansion, likely in the late Pleistocene. A predominant haplotype was found across all rookeries, but other haplotype groups were regionally specific.
4. In general, there was agreement in patterns of genetic differentiation in the mitochondrial DNA and microsatellite data, and in some pairwise comparisons a higher mutation rate of microsatellites provided stronger evidence of differentiation.
5. These results suggest natal philopatry operates in the choice of breeding locations for males as well as females.
6. Evidence of genetic connectivity among neighbouring rookeries led to the identification of seven genetic stocks. Geographic boundaries of rookeries used by genetic stocks varied widely (160–1,300 km), highlighting a need for field studies to better understand movement patterns.
7. Hierarchical analysis of molecular variance identified significant genetic differentiation based upon genetic stock, nesting phenology (summer vs. winter nesters), and a west–east discontinuity across Torres Strait. A pattern of isolation by distance was identified, which was most strongly observed in the microsatellite data.
8. In combination with tagging and telemetry studies, these results will allow better quantification of stock‐specific threats along migratory routes and in foraging habitats. Implications of climate change will be stock specific and may depend upon the extent of genetic connectivity between neighbouring stocks.

     

Anodic TiO₂ nanotube layers electrochemically filled with MoO₃ and their antimicrobial properties

In the present work, the authors produce a Ti surface with a TiO? nanotube coating and investigate the electrochemical filling of these layers with MoO?. The authors demonstrate that using a potential cycling technique, a homogenous MoO? coating can be generated. Controllable and variable coating thicknesses are achieved by a variation of the number of cycles. Thicknesses from a few nanometers to complete filling of the nanotube layers can be obtained. A thermal treatment is used to convert the as-deposited amorphous MoO(x) phases into MoO?. These MoO? loaded nanotube layers were then investigated regarding their antimicrobial properties using strains of Staphylococcus aureus, Escherichia coli, and Pseudomonas aeruginosa. The authors found that the combination of crystalline MoO? on TiO? nanotubes shows excellent antimicrobial properties.     

Multivariate genetic analysis of canine hip and elbow dysplasia as well as humeral osteochondrosis in the Bernese mountain dog

In the present study genetic parameters for canine hip dysplasia (CHD), canine elbow dysplasia (CED) and osteochondrosis dissecans of the humeral head (OCD) were analysed in Bernese mountain dogs. The data set included the official scores for CHD and CED from 5534 Bernese mountain dogs born in the years 1995-2008. A multivariate linear animal model was employed to estimate heritabilities, additive genetic and residual correlations using residual maximum likelihood (REML). Heritability estimates were h2 = 0.26 for CHD, h2 = 0.22 for CED and h2 = 0.40 for OCD. The additive genetic correlation between CHD and CED was 0.31, between CHD and OCD 0.25, and between CED und OCD -0.49. A further multivariate analysis of the prevalence of the FCP (fragmented coronoid processus), CHD and OCD revealed a heritability of h2 = 0.59 for FCP. The additive genetic correlations among FCP and CHD as well CED except FCP were positive, but negative with OCD. Multivariately estimated breeding values will lead to higher genetic progress because the correlation structure of the traits can be taken into account and possible genetic antagonisms among traits are better reflected in the breeding values.     

Robust fitting of fluorescence spectra for pre-symptomatic wheat leaf rust detection with Support Vector Machines

Early recognition of pathogen infection is of great relevance in precision plant protection. Pre-symptomatic disease detection is of particular interest. By use of a laserfluoroscope, UV-light induced fluorescence data were collected from healthy and with leaf rust inoculated wheat leaves of the susceptible cultivar Ritmo 2-4 days after inoculation under controlled conditions. In order to evaluate pathogen impact on fluorescence spectra 215 wavelengths in the range of 370-800 nm were recorded. The medians of fluorescence signatures suggest that inoculated leaves may be separated from healthy ones, but high-frequency oscillations and individual reactions of leaves indicate that separability is difficult to achieve. The misbalance between the high number of measured wavelengths and the low number of training examples induces a high overfitting risk. For a pre-symptomatic pathogen identification a small number of robust features was desired which comprise most of the information relevant for the given classification task. Instead of choosing only the most relevant wavelengths, the coefficients of polynomials fitting the spectra were used for classification. They specify the global curve characteristics. Piecewise fitting by polynomials of fourth order led to high classification accuracy. Support Vector Machines were used for classification. Cross validation demonstrated that the achieved classification accuracy reached 93%. This result could be attained on the second day after inoculation, before any visible symptoms appeared. The described method is of general interest for pre-symptomatic pathogen detection based on fluorescence spectra.     

Ecological and Pharmacological Activities of Polybrominated Diphenyl Ethers (PBDEs) from the Indonesian Marine Sponge Lamellodysidea herbacea

Two known Polybrominated Diphenyl Ethers (PBDEs), 3,4,5-tribromo-2-(2′,4′-dibromophenoxy)phenol (1d) and 3,4,5,6-tetrabromo-2-(2′,4′-dibromophenoxy)phenol (2b), were isolated from the Indonesian marine sponge Lamellodysidea herbacea. The structure was confirmed using ¹³C chemical shift average deviation and was compared to the predicted structures and recorded chemical shifts in previous studies. We found a wide range of bioactivities from the organic crude extract, such as (1) a strong deterrence against the generalist pufferfish Canthigaster solandri, (2) potent inhibition against environmental and human pathogenic bacterial and fungal strains, and (3) the inhibition of the Hepatitis C Virus (HCV). The addition of a bromine atom into the A-ring of compound 2b resulted in higher fish feeding deterrence compared to compound 1d. On the contrary, compound 2b showed only more potent inhibition against the Gram-negative bacteria Rhodotorula glutinis (MIC 2.1 μg/mL), while compound 1d showed more powerful inhibition against the other human pathogenic bacteria and fungi. The first report of a chemical defense by compounds 1d and 2b against fish feeding and environmental relevant bacteria, especially pathogenic bacteria, might be one reason for the widespread occurrence of the shallow water sponge Lamellodysidea herbacea in Indonesia and the Indo-Pacific.     

Does marine fish farming affect local small‐scale fishery catches? A case study in the NW Mediterranean Sea

Fish farms have been shown to aggregate large numbers of wild fish in their surroundings. Although little is known about how this affects the local fishery, two hypotheses have been put forward; a trapping and a protecting effect on wild fish. This study provides the first monitoring of commercial and recreational fishing activity at a fish farm. We assessed the effect on the small‐scale fishery analysing the differences between fishing in farm proximity and away from the farm (in terms of catch rate, income and catch composition). Moreover, we estimated the biomass removal from fishing activities by farm employees inside the farm. The study was conducted from January 2011 to June 2012 at a Gilthead seabream farm in the NW Mediterranean. The findings revealed a relevant amount of commercial and recreational fishing effort in farm proximity. Yet, the results showed no benefit or difference of fishing in close proximity to the farm compared with areas away from the farm. Thus, we conclude that farm‐aggregated fish are protected from the commercial fleet by the farm leasehold area, but remain vulnerable to hidden fishing practices inside the farm, where farm employees harvest more than 4 t of wild fish annually.     

Using a multi-stakeholder approach to increase value for traditional agroforestry systems: the case of baobab (Adansonia digitata L.) in Kilifi,Kenya

Agroforestry Systems - The baobab tree (Adansonia digitata L.) is an integral component of many dryland farming systems in sub-Sahara Africa. Such traditional agroforestry systems can foster a...