Parent volatiles in comet 9P/Tempel 1: before and after impact

We quantified eight parent volatiles (H2O, C2H6, HCN, CO, CH3OH, H2CO, C2H2, and CH4) in the Jupiter-family comet Tempel 1 using high-dispersion infrared spectroscopy in the wavelength range 2.8 to 5.0 micrometers. The abundance ratio for ethane was significantly higher after impact, whereas those for methanol and hydrogen cyanide were unchanged. The abundance ratios in the ejecta are similar to those for most Oort cloud comets, but methanol and acetylene are lower in Tempel 1 by a factor of about 2. These results suggest that the volatile ices in Tempel 1 and in most Oort cloud comets originated in a common region of the protoplanetary disk.     

Research in plant genetic resources 1978–2003: General index of the second 25 volumes 'Kulturpflanze'/'GRACE'

A general index of the second 25 volumes of 'Kulturpflanze' 1978–1990/'GRACE' (Genetic Resources and Crop Evolution) 1992–2003 is provided. Its predecessor covered the first 25 volumes of the periodical 'Die Kulturpflanze' and appeared in 1977. The index can be considered as a unique source for research in plant genetic resources.     

Probabilistic patterns of inundation and biogeomorphic changes due to sea-level rise along the northeastern U.S. Atlantic coast

Context

Coastal landscapes evolve in response to sea-level rise (SLR) through a variety of geologic processes and ecological feedbacks. When the SLR rate surpasses the rate at which these processes build elevation and drive lateral migration, inundation is likely.

Objectives

To examine the role of land cover diversity and composition in landscape response to SLR across the northeastern United States.

Methods

Using an existing probabilistic framework, we quantify the probability of inundation, a measure of vulnerability, under different SLR scenarios on the coastal landscape. Resistant areas—wherein a dynamic response is anticipated—are defined as unlikely (p < 0.33) to inundate. Results are assessed regionally for different land cover types and at 26 sites representing varying levels of land cover diversity.

Results

Modeling results suggest that by the 2050s, 44% of low-lying, habitable land in the region is unlikely to inundate, further declining to 36% by the 2080s. In addition to a decrease in SLR resistance with time, these results show an increasing uncertainty that the coastal landscape will continue to evolve in response to SLR as it has in the past. We also find that resistance to SLR is correlated with land cover composition, wherein sites containing land cover types adaptable to SLR impacts show greater potential to undergo biogeomorphic state shifts rather than inundating with time.

Conclusions

Our findings support other studies that have highlighted the importance of ecological composition and diversity in stabilizing the physical landscape and suggest that flexible planning strategies, such as adaptive management, are particularly well suited for SLR preparation in diverse coastal settings.

     

The δ18O signatures of HCl‐extractable soil phosphates: methodological challenges and evidence of the cycling of biological P in arable soil

Soil phosphates exchange oxygen atoms rapidly with soil water once recycled by intracellular enzymes, thereby approaching an equilibrium δ¹⁸O_P signature that depends on ambient temperature and the δ¹⁸O_W signature of soil water. We hypothesized that in the topsoil, phosphates reach this equilibrium δ¹⁸O_P signature even if amended by different fertilizers. In the subsoil, however, there might be phosphates with a smaller δ¹⁸O_P value than that represented by the isotopic equilibrium value, a condition that could exist in the case of limited biological P cycling only. We tested these hypotheses for the HCl‐extractable P pool of the Hedley fractionation scheme of arable soil in Germany, which integrates over extended time‐scales of the soil P cycle. We sampled several types of fertilizer, the surface soil that received these fertilizer types and composites from a Haplic Luvisol depth profile under long‐term agricultural practice. Organic fertilizers had significantly smaller δ¹⁸O_P values than mineral fertilizers. Intriguingly, the fields fertilized organically also tended to have smaller δ¹⁸O_P signatures than other types of surface soil, which calls into question full isotopic equilibrium at all sites. At depths below 50 cm, the soil δ¹⁸O_P values were even depleted relative to the values calculated for isotopic equilibrium. This implies that HCl‐extractable phosphates in different soil horizons are of different origins. In addition, it supports the assumption that biological cycling of P by intracellular microbial enzymes might have been relatively inefficient in the deeper subsoil. At depths of 50–80 cm, there was a transition zone of declining δ¹⁸O_P values, which might be regarded as the first evidence that the degree of biological P cycling changed at this depth interval.     

Insulin-like growth factor I (IGF-I) mRNA expression in coho salmon,Oncorhynchus kisutch: Tissue distribution and effects of growth hormone/prolactin family proteins

To examine the hormonal and nutritional regulation of insulin-like growth factor I (IGF-I) mRNA expression, a sequence-specific solution hybridization/RNase protection assay for coho salmon IGF-I mRNA was developed. This assay is both rapid and sensitive and has low inter- (less than 15%) and intra-assay variations (less than 5%). Using this assay, the tissue distribution of IGF-I mRNA and effects of growth hormone (GH), prolactin (PRL) and somatolactin (SL) on hepatic IGF-I mRNA expression in coho salmon were examined in vivo. Liver had the highest IGF-I mRNA level of 16 pg/μg DNA. Significant amounts of IGF-I mRNA were also found in all other tissues examined (intestine 4.1, kidney 3.8, gill arch 2.4, brain 2.4, ovary 2.3, muscle 2.1, spleen 1.7 and fat 1.1 pg/μg DNA). Injection of coho salmon GH at doses of 0.1 and 1 μg/g body weight significantly increased the hepatic IGF-I mRNA levels in a dose-dependent manner. Injection of coho salmon SL, a recently discovered member of the GH/PRL family, stimulated the IGF-I mRNA expression at the higher dose (1 μg/g), whereas coho salmon PRL had no effect at either dose. Concentration-dependent stimulation by coho salmon GH was also obtained in vitro in primary culture of salmon hepatocytes in concentrations ranging from 0.01 to 1 μg/ml. These results indicate that IGF-I mRNA expression occurs in a variety of tissues in coho salmon, and that at least the hepatic expression is under the regulation of GH and possibly other hormones. The sequence-specific assay established in the present study can be used for accurate quantitation of IGF-I mRNA in salmonid species, and can contribute to a better understanding of the physiology of IGF-I in salmonids.

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Résumé Afin d'étudier les régulations homronales et nutritionnelles de l'expression des ARNm de l'IGF-I (insulin-like growth factor I), un dosage spécifique par hybridation en solution des ARNm d'IGF-I de saumon coho et protégé des RNases, a été développé. Ce dosage, à la fois rapide et sensible, présente un faible coefficient de variation inter- (< 15%) et intra- (< 5%) dosage. L'étude de la distribution tissulaire des ARNm de l'IGF-I et des effets de l'hormone de croissance (GH), de la prolactine (Prl) et de la somatolactine (SI) sur l'expression hépatique des ARNm de l'IGF-I, a été entreprise in vivo chez le saumon coho en utilisant ce dosage. Le foie présente les plus grandes quantités d'ARNm d'IGF-I (16 pg/μg d'ADN). Des quantités significatives d'ARNm d'IGF-I ont été également détectées dans tous les autres tissus étudiés (intestin 4,1; rein 3,8; branchie 2,4; ovaire 2,3; muscle 2,1; rate 1,7 et graisse 1,1 pg/μg d'ADN). L'injection à des saumons coho, de GH à des doses de 0,1 et 1 μg/g de poids vif, augmente significativement et de manière dose dépendante les niveaux hépatiques d'ARNm d'IGF-I. L'injection de SI de saumon coho, un membre récemment découvert de la famille GH/Prl, stimule avec la plus haute dose utilisée, l'expression des ARNm d'IGF-I alors que la Prl n'a aucun effet. La GH augmente de manière dose dépendante (0,01–1 μg/ml) l'expression in vitro des ARNm d'IGF-I par des ARNm d'IGF-I par des hépatocytes de saumon coho en culture. Ces résultats indiquent que, chez le saumon coho, l'expression des ARNm d'IGF-I est présente dans le nombreaux tissus et que, l'expression hépatique est, au moins en partie, régulée par la GH et peut-être par d'autres hormones. Le dosage par séquence spécifique mise au point dans le présent travail, peut-être utilisé pour la quantification précise des ARNm, d'IGF-I de salmonidés et devrait permettre une meilleure connaissance de la physiologie de L'IGF-I chez les salmonidés.

     

Reliable detection and identification of genetically modified maize, soybean, and canola by multiplex PCR analysis

Multiplex PCR procedures were developed for simultaneously detecting multiple target sequences in genetically modified (GM) soybean (Roundup Ready), maize (event 176, Bt11, Mon810, T14/25), and canola (GT73, HCN92/28, MS8/RF3, Oxy 235). Internal control targets (invertase gene in corn, lectin and beta-actin genes in soybean, and cruciferin gene in canola) were included as appropriate to assess the efficiency of all reactions, thereby eliminating any false negatives. Primer combinations that allowed the identification of specific lines were used. In one system of identification, simultaneous amplification profiling (SAP), rather than target specific detection, was used for the identification of four GM maize lines. SAP is simple and has the potential to identify both approved and nonapproved GM lines. The template concentration was identified as a critical factor affecting efficient multiplex PCRs. In canola, 75 ng of DNA template was more effective than 50 ng of DNA for the simultaneous amplification of all targets in a reaction volume of 25 microL. Reliable identification of GM canola was achieved at a DNA concentration of 3 ng/microL, and at 0.1% for GM soybean, indicating high levels of sensitivity. Nonspecific amplification was utilized in this study as a tool for specific and reliable identification of one line of GM maize. The primer cry1A 4-3' (antisense primer) recognizes two sites on the DNA template extracted from GM transgenic maize containing event 176 (European corn borer resistant), resulting in the amplification of products of 152 bp (expected) and 485 bp (unexpected). The latter fragment was sequenced and confirmed to be Cry1A specific. The systems described herein represent simple, accurate, and sensitive GMO detection methods in which only one reaction is necessary to detect multiple GM target sequences that can be reliably used for the identification of specific lines of GMOs.     

Aerosols Emitted from a Livestock Farm in Southern Germany

We studied the atmospheric aerosol of a farm directly on farm, downwind, and in the background with the aim to characterize the aerosol source of livestock farming physically and chemically. The farm hosted chicken, cattle and pig.The farm was found to be a source of primary and secondary particles. Super-μm particles of various types were emitted from the stables and adjacent facilities related to farming activities. On farm elevated concentrations of ammonia, particulate ammonium and nitrate were observed. The significant emission of condensation nuclei and large, 2 μm-sized particles (droplets) was observed under humid conditions in plumes which most likely originated from open manure pits at least in one case. It is suggested that this aerosol mode consisted of ammonium haze droplets formed by saturation of advected air with ammonia within a few minutes. In one night, a mass uptake of Δm > 5.4 μg m^-3 in the super-μm mode was observed along with a loss of Δm = —1.0 μg m^-3 in the sub-μm mode based on differential sampling upwind and downwind of the farm. The particulate matter mass median diameter was correspondingly shifted from 1.32 to 3.39 μm. About one third of the mass increase was due to organic carbon. Furthermore, differential sampling showed particulate calcium and nitrate/nitric acid to be emitted from the farm, too. The study encourages to systematically characterize the aerosol emitted from livestock raising in future studies of similar kind.     

Seroepidemiology of respiratory (group 2) canine coronavirus, canine parainfluenza virus, and Bordetella bronchiseptica infections in urban dogs in a humane shelter and in rural dogs in small communities

This prospective study evaluated seroepidemiologic features of canine respiratory coronavirus (CRCoV), canine parainfluenza virus (CPIV), and Bordetella bronchiseptica infections in dogs in an urban humane shelter and in rural/small community dog populations in western Canada. Seroprevalence of CRCoV and CPIV was low compared with other countries; seroprevalence of B. bronchiseptica was moderate to high in most populations examined. Rural dogs were 0.421 times (P ≤ 0.0001) less likely to be positive for CRCoV than dogs admitted to the shelter. There were no statistical differences in prevalence of antibodies to B. bronchiseptica and CPIV between urban and rural populations. Dogs from Fort Resolution, NWT were significantly (P < 0.05) less likely to have moderate or high antibody titers to the 3 agents than dogs in the shelter. Seroconversion to CRCoV was common in dogs in the shelter, but was not associated (P = 0.18) with respiratory disease. Antibodies to CRCoV, CPIV, or B. bronchiseptica on arrival were not significantly (P > 0.05) associated with disease-sparing after entry into the shelter.     

Divergent cytokine responses of macrophages to Mycobacterium avium subsp. paratuberculosis strains of Types II and III in a standardized in vitro model

Based on epidemiological and clinical observations, different strains of Mycobacterium avium subsp. paratuberculosis (MAP) are suspected to significantly differ in their virulence for ruminants. In the pathogenesis of paratuberculosis, macrophages represent the principal target cell for MAP. In order to judge the ability of different MAP-genotypes to modulate macrophage responses, the cytokine responses of the monocyte cell line THP-1 were studied after challenge with three different MAP strains under standardized conditions. The bovine field isolate J1961 (major Type II) and the ovine field isolate JIII-86 (Type III) were compared with the laboratory adapted reference strain ATCC 19698 (Type II). Strains were shown by three different typing methods (IS900-RFLP-, MIRU-VNTR-, and SSR-analysis) to substantially differ in several genotypic features. Macrophage function was assessed by quantifying mRNA of the cytokines TNF-α, IL-1?, and IL-10 by quantitative RT-PCR. Secreted TNF-α protein was measured by a cytotoxicity test, IL-1? and IL-10 using ELISA tests. The three MAP strains of various genotypes differ in their effect on human macrophages depending on challenge dose and infection time. These differences concerned both the mRNA level and secreted protein amounts of proinflammatory cytokines TNF-α, IL-1β and anti-inflammatory cytokine IL-10. Type III strain produced less IL-10 and IL-1β mRNA and protein but more TNF-α protein at 2h than the Type II strains. In summary, our results support the hypothesis that strain characteristics might have relevance for the host response towards MAP and, consequently, for the pathogenesis of paratuberculosis.