The potential of hyperspectral images and partial least square regression for predicting total carbon,total nitrogen and their isotope composition in forest litterfall samples

Purpose

The main objective of this study was to examine the potential of using hyperspectral image analysis for prediction of total carbon (TC), total nitrogen (TN) and their isotope composition (δ¹³C and δ¹⁵N) in forest leaf litterfall samples.

Materials and methods

Hyperspectral images were captured from ground litterfall samples of a natural forest in the spectral range of 400–1700 nm. A partial least-square regression model (PLSR) was used to correlate the relative reflectance spectra with TC, TN, δ¹³C and δ¹⁵N in the litterfall samples. The most important wavelengths were selected using β coefficient, and the final models were developed using the most important wavelengths. The models were, then, tested using an external validation set.

Results and discussion

The results showed that the data of TC and δ¹³C could not be fitted to the PLSR model, possibly due to small variations observed in the TC and δ¹³C data. The model, however, was fitted well to TN and δ¹⁵N. The cross-validation R² _cv of the models for TN and δ¹⁵N were 0.74 and 0.67 with the RMSE_cv of 0.53% and 1.07‰, respectively. The external validation R² _ex of the prediction was 0.64 and 0.67, and the RMSE_ex was 0.53% and 1.19 ‰, for TN and δ¹⁵N, respectively. The ratio of performance to deviation (RPD) of the predictions was 1.48 and 1.53, respectively, for TN and δ¹⁵N, showing that the models were reliable for the prediction of TN and δ¹⁵N in new forest leaf litterfall samples.

Conclusions

The PLSR model was not successful in predicting TC and δ¹³C in forest leaf litterfall samples using hyperspectral data. The predictions of TN and δ¹⁵N values in the external litterfall samples were reliable, and PLSR can be used for future prediction.

     

白三叶基因工程改良研究进展

白三叶（Trifolium repens L.）作为优良牧草和地被植物具有重要的应用价值。但其耐盐碱、干旱能力差等原因致使应用受到广泛限制,转基因技术的快速发展为白三叶种质创新提供了有效技术手段,为开展白三叶分子育种奠定了基础。本文就近30年来有关白三叶组织培养、转化方法、转基因遗传改良方面的研究进展进行了综述,并对其应用进行了展望。     

Establishment of a comprehensive indicator system for the assessment of biodiversity and ecosystem services

Context

Common indicators are needed to monitor biodiversity loss and the implications for the sustainable provision of ecosystem services (ES). A plethora of different sets of indicators may hinder the identification of major endpoints for large-scale assessments of biodiversity and ecosystem services (BES).

Objectives

We aim to describe the main challenges of indicators for BES assessment and provide suggestions for establishing a comprehensive indicator system.

Methods

An extensive literature review was conducted in this study. We review the main challenges of indicators for BES assessment and propose corresponding improvements from our perspectives of theory and practical applications.

Results

The main theoretical challenges of existing indicators include inconsistent definitions and classifications of ES, misunderstanding of linkages among biodiversity, ecosystem structure, functions and services, and practical problems relate to such issues as indicator representativeness, data availability, and uncertainty. Our suggested improvements include clarifying the main terms, concepts and classification of indicators, establishing a robust conceptual framework with clear interactions among different components and indicators, selecting indicators based on ecosystem properties, streaming existing data into one platform, and strengthening validation of proxies. The steps for constructing a comprehensive indicator system for BES assessment are summarized.

Conclusions

Clear definitions of key terms are indispensable to classify indicators and construct a conceptual framework. Improved understanding of the relations among indicators of biodiversity, ecosystem functions, and ES across multiple scales can guide the development of the indicator system. The integrated indicator system is an important tool for BES assessment to support decision making for sustainable development.

     

Dynamics of forest biomass carbon stocks from 1949 to 2008 in Henan Province,east-central China

We estimated forest biomass carbon storage and carbon density from 1949 to 2008 based on nine consecutive forest inventories in Henan Province,China.According to the definitions of the forest inventory,Henan forests were categorized into five groups: forest stands,economic forests,bamboo forests,open forests,and shrub forests.We estimated biomass carbon in forest stands for each inventory period by using the continuous biomass expansion factor method.We used the mean biomass density method to estimate carbon stocks in economic,bamboo,open and shrub forests.Over the 60-year period,total forest vegetation carbon storage increased from34.6 Tg(1 Tg = 1×10~(12)g) in 1949 to 80.4 Tg in 2008,a net vegetation carbon increase of 45.8 Tg.By stand type,increases were 39.8 Tg in forest stands,5.5 Tg in economic forests,0.6 Tg in bamboo forests,and-0.1 Tg in open forests combine shrub forests.Carbon storageincreased at an average annual rate of 0.8 Tg carbon over the study period.Carbon was mainly stored in young and middle-aged forests,which together accounted for 70–88%of the total forest carbon storage in different inventory periods.Broad-leaved forest was the main contributor to forest carbon sequestration.From 1998 to 2008,during implementation of national afforestation and reforestation programs,the carbon storage of planted forest increased sharply from 3.9 to 37.9 Tg.Our results show that with the growth of young planted forest,Henan Province forests realized large gains in carbon sequestration over a 60-year period that was characterized in part by a nation-wide tree planting program.     

Influence of long-term vaccination of a breeding herd of pigs against PCV2 on reproductive parameters

The objective of the study was to evaluate an efficacy of sows vaccination protocols in the herd with serious problems affecting efficacy of reproduction. The study was performed in a large pig herd with about 1200 sows. Before vaccination against PCV2, farrowing rate in this farm was about 65%. Sows, boar and replacement gilts were immunized using Circovac vaccine (Merial, France) according to producer's recommendations. Parameters of production were analyzed since 2007 until 2010 in selected batches of sows inseminated at the same weeks of the year (17th, 18th, 19th and 20th) to eliminate seasonal variability. In total, 940 sows were subjected to the study. No significant changes in management during these years were introduced. The applied protocol of sow herd long-term vaccination proved to be very efficient. All measured production parameters: reproduction rate, number of piglets born alive, birth weight of piglets and number of piglets weaned per a litter improved after implementation of immunization program. Moreover, further improvement was observed with vaccination in the following reproduction cycles. The most spectacular effect of vaccination regarded average farrowing rate that increased from 64.76% in control group to 86.93% after basic vaccination. Two years after implementation of vaccination program this parameter reached 93.6%. Number of piglets weaned per sow per a litter improved from 10.31 to 11.74 after one year of vaccination and remained relatively stable through the following year. Simultaneously, the percentage of newborn piglets with birth weight < 1 kg decreased significantly (p < 0.05). To summarize, vaccination against PCV2 influenced positively the insemination rate, number of piglets born alive and weaned per litter as well as birth body weight and percentage of piglets weighing < 1 kg.     

Validation of multi-frequency inversion method by using dummy scatterers of zooplankton

ABSTRACT:   High- and multi-frequency acoustic measurement systems and the multi-frequency inversion (MFI) method have been used to measure spatial distributions and abundances of zooplankton by size. In this study, the calibration method for high- and multi-frequency systems was developed and the validation of MFI method was carried out by scatterer measurement. The standard sphere calibration method that has not been applied to such high- and multi-frequencies was applied to calibrate our high- and multi-frequency system, TAPS-6 (Tracor Acoustic Profiling System, BAE Systems). An optimum size of standard sphere of tungsten carbide of 1 mm radius was derived to have a small target strength variation for the six frequencies of TAPS-6, and the practicability and precision of the standard sphere calibration method was confirmed for those frequencies. A school or cluster of dummy scatterers of zooplankton with small tungsten carbide spheres were designed to validate the MFI method, and volume back-scattering strength values were measured by the multi-frequency system. By comparing the result of the inversion with their real composition, the features of the MFI method could be validated and examined.     

Pollution and Ecological Risk Assessment of Heavy Metals in Farmland Soils in Yanqi County,Xinjiang, Northwest China

A total of 50 farmland soil samples were collected from the Yanqi County, Xinjiang, China, and the concentrations of eight heavy metal elements (As, Cd, Cr, Cu, Mn, Ni, Pb and Zn) were determined by standard methods. The spatial distribution, pollution level and ecological risk status of heavy metals were analyzed based on GIS technology, the Geo-accumulation Index (Igeo), the Pollution Load Index (PLI) and the Potential Ecological Risk Index (RI). Results indicated that: (1) The average contents of Cd, Cr, Ni, Pb, and Zn of farmland soils exceeded the background values of irrigation soils in Xinjiang by 1.5, 1.40, 1.33, 2.63, and 4.92 times, respectively. Cd showed a no-pollution level, Zn showed a partially moderate pollution level, Pb showed a slight pollution level, and Cr, Cu, As, Mn, and Ni showed no-pollution level, compared to the classification standard. The PLI values of heavy metal elements of farmland soils varied from 0.83 to 1.89, with an average value of 1.29, at the moderate pollution level. (2) The Individual Potential Ecological Risk Index for heavy metals in the study area was ranked in the order of: As > Ni > Cu > Cd > Pb > Cr> Zn. The RI values of heavy metals of farmland soils varied from 3.45 to 11.34, with an average value of 6.13, at the low ecological risk level. (3) Cu and Mn of farmland soils were mainly originated from the soil parent material and topography of the study area. As, Cd, Ni and Pb were mainly originated from human activities, and Cr and Zn may originated from both natural and anthropogenic factors in the study area.     

Developing fertilizer recommendations for rice in Sub-Saharan Africa,achievements and opportunities

Improving agricultural productivity to keep pace with the fast-growing food demand is a huge challenge for sub-Saharan Africa (SSA). Fertilizer is a powerful productivity-enhancing input; nevertheless, farmers of SSA use only 5–9 kg ha^?1 of fertilizer, which is ten times lesser than Latin America and Asia (50 and 80 kg ha^?1, respectively). Rice (Oryza sativa) is one of the most important food crops of SSA, and its consumption is growing faster than any other commodity in Africa. Rice-based systems have high potential for improving food production through an efficient management of fertilizers. The biophysical environment, cropping systems and socio-economic status of farmers including market opportunities are the main factors for developing appropriate fertilizer recommendations. Many research efforts have been invested in different countries to develop fertilizer recommendation for rice. However, the diversity of rice ecologies, the type and the cost of fertilizers available on local market are the main constraints for development of blanket recommendations of fertilizer usually applied in many countries. Here, we make a reviews of the progress made on the development of fertilizer recommendations for rice-based systems in SSA. The utilization of the new concepts and decisions support tools for development of fertilizer recommendation and the main achievements and weakness are discussed. The opportunities offered by the new concepts, modeling and decision support tools are discussed in a regional strategic approach for better management of fertilizers in the diversified ecologies of rice-based systems.     

Nomenclature and genetic relationships of apples and pears from Terceira Island

Heritage apple (Malus domestica Borkh. hybrids) and pear (Pyrus communis L. hybrid) trees grow in villages throughout Terceira Island, Azores, Portugal. Some of these pears have different names but similar morphology. The objective of this study was to determine synonymy, homology, and phylogeny of apples and pears from Terceira and to examine potential relationships of the island pears with standard apples and pears of Portuguese or American descent. Nine apple microsatellite markers were used to determine genetic relationships. Distance- and parsimony-based cluster analysis grouped these genotypes into separate apple and pear clades. The Terceira apples were divided into two clades: the maçā and the reineta-reinette. Among the 17 heritage apple genotypes, seven unique accessions were identified and four groups of synonyms, or possibly clones, were detected including: ‘Reineta Agosto’ and ‘Reineta Verde’ from Altares; ‘Reineta Castanha’ and ‘Reineta Verde Miuda’; ‘Maçā Pêra,’ ‘Maçā Calhau’, ‘Pêro Branco’ from Salga and from Terra-Chā and ‘Maçā Marmelo’; and the five genotypes ‘Maçā Sao Joao’, ‘Malápio Rosa’, ‘Maçā Gaspar’, ‘Maçā Branca’ and ‘Maçā Pato’. In addition, two homonyms were detected. ‘Pêro Vermelho’ from Terra Chā was a separate genotype from a tree from Doze Ribeiras of the same name, but Pêro Branco from Terra Chā appears to be a clone that can be distinguished by an additional allele at CH1F07a from a tree with that name from Salga. One pair of apple clones, ‘Reineta Agosto’ and ‘Reineta Verde’ from Altares appear to be derived from an unreduced gamete of ‘Golden Delicious.’ Another apple genotype ‘Maçā Acida’ could be a sibling of the ‘Maçā Pêra’ clonal group. Other tested standard apples from the US genebank were unrelated to Terceira genotypes. Of the seven heritage pears, five unique genotypes and one pair of synonyms were detected. ‘Pêra Papo Pintassilgo’ from Raminho and ‘Pêra Vermelha’ from the nursery of Serviço de Desenvolvimento Agario da Terceira (SDAT) were synonyms. ‘Passans du Portugal’ was related to ‘Pêra Cabaca’ but other standard pears from the US genebank were unrelated to Terceira genotypes. Future studies will include additional apple and pear cultivars from other Islands of the Azores and continental Portugal, and wild Asian species to further explore genetic relationships.     

Reputational damage and the Fukushima disaster: an analysis of seafood in Japan

As the levels of radioactivity in seafood have fallen back into the safe range, Fukushima fisheries are considering reopening. However, even if seafood from the Fukushima area were sufficiently safe to distribute to seafood markets, its value may be undermined because of the damage done to its reputation by the Fukushima disaster. We quantified consumers’ preferences for seafood from Fukushima and adjacent prefectures to examine the extent of the reputational damage to Fukushima seafood. We conducted a choice experiment to measure consumers’ willingness to pay for seafood from the Fukushima area. We also measured the impact of displaying ecolabels [Marine Stewardship Council (MSC) and Marine Eco-label Japan (MEL)] on Fukushima products. The results indicated that Fukushima products are considerably discounted compared with products displayed as domestic; even products from adjacent prefectures are substantially discounted. By contrast, consumers positively evaluated locally labeled products. We also found that demersal fish are discounted more than pelagic fish that inhabit the ocean surface off the shore of Fukushima.