Physical forcing on fish abundance in the southern California Current System

The California Current System (CCS) is an eastern boundary current system with strong biological productivity largely due to seasonal wind‐driven upwelling and transport of the California Current (CC). Two independent, yet complementary time series, CalCOFI ichthyoplankton surveys and sampling of southern California power plant cooling‐water intakes, have indicated that an assemblage of predominantly cool‐water affinity fishes spanning nearshore to oceanic environments in the southern CCS has declined dramatically from the 1970s to the 2000s. We examined potential oceanographic drivers behind this decline both within and north of the CalCOFI survey area in order to capture upstream processes as well. Empirical orthogonal function (EOF) analyses using output from a data‐assimilative regional ocean model revealed significant relationships between the fish time series and spatial patterns of upwelling, upper ocean heat content and eddy kinetic energy in the CCS. Correlation and linear regression analyses indicated that the declining trend in fish abundance was correlated with a suite of factors: reduced offshore and increased inshore upwelling; a long term warming trend combined with more recent interannual variability in ocean temperature; weaker eddy kinetic energy north of Point Conception (35°N), potentially indicating reduced transport of the California Current (CC); increased influence of the California Undercurrent (CUC); and a decline in zooplankton displacement volume across the southern CCS. Understanding how changes in oceanography affect fish populations will offer insights into managing fisheries in a changing climate.     

Genome‐wide association analysis of salmon lice (Lepeophtheirus salmonis) resistance in a North American Atlantic salmon population

Our objective was to detect single nucleotide polymorphisms (SNPs) associated with resistance to the salmon louse in the Saint John River aquacultural population of North American Atlantic salmon using estimated breeding values (EBVs) and 6K genotypes from the parent‐generation and lice count phenotypes from the challenged, but ungenotyped, offspring‐generation. In 2011 and 2012, we challenged recent smolts with approximately 100 copepodids each. Fish were euthanized once the lice reached the chalimus stages and lice count, sex, tank and salt water weight were recorded. We used a multiple trait model to estimate breeding values for the parent‐generation using their own fresh water weights and the salt water weights and lice counts of the offspring‐generation. Salmon lice count heritability for untransformed and transformed data was 0.17 and 0.29 respectively. Two different genome‐wide association study methods were compared: (i) forward multiple linear regression and (ii) a mixed linear model using principal components to correct for population stratification as implemented in the egscore function of GenABEL. The two methods detected different SNPs located on different chromosomes. The multiple regression method incorporated 70 SNPs found on chromosomes 2, 7, 9, 12, 14, 15, 21, 22, 1p/23, 24. Many SNPs entered into the forward multiple regression are likely to be false positives from not correcting for the observed population stratification and cryptic relatedness. In contrast, the mixed linear model identified only two SNPs, one on chromosome 1p/23 (6.9%) and one on chromosome 1q (6.1%) consistent with louse‐resistance being a quantitative trait.     

Potential for reintroduction of lake sturgeon in five northern Lake Michigan tributaries: a habitat suitability perspective

• 1. Conservation and rehabilitation efforts for lake sturgeon Acipenser fulvescens throughout the Great Lakes include the re‐establishment of self‐sustaining stocks in systems where they have been extirpated.
• 2. Information on the suitability of potential lake sturgeon habitat in tributaries is important for determining their capacity to support lake sturgeon stocking and to develop system‐specific rehabilitation strategies.
• 3. Geo‐referenced habitat information characterizing substrate composition, water depth, and stream gradient were applied to a life‐stage specific lake sturgeon habitat suitability index in a geographic information system to produce spatially explicit models of life‐stage specific habitat characteristics in five northern Lake Michigan tributaries from which lake sturgeon have been extirpated.
• 4. Habitat models indicated that high quality lake sturgeon spawning and staging habitat comprised 0 to 23% and 0 to 9% of the available habitat, respectively, whereas high quality juvenile lake sturgeon habitat was relatively ubiquitous throughout each river and comprised 39 to 99%.
• 5. Comparison of these data to lake sturgeon habitat availability in Lake Michigan tributaries currently supporting populations indicated that spawning and staging habitats may limit the ability of these systems to support spawning. Efforts to re‐establish lake sturgeon populations in these systems should consider the creation of spawning and staging habitat to increase reproductive and recruitment potential prior to the initiation of stocking efforts.

Copyright © 2007 John Wiley & Sons, Ltd.     

Prevention of organ allograft rejection by a specific Janus kinase 3 inhibitor

Because of its requirement for signaling by multiple cytokines, Janus kinase 3 (JAK3) is an excellent target for clinical immunosuppression. We report the development of a specific, orally active inhibitor of JAK3, CP-690,550, that significantly prolonged survival in a murine model of heart transplantation and in cynomolgus monkeys receiving kidney transplants. CP-690,550 treatment was not associated with hypertension, hyperlipidemia, or lymphoproliferative disease. On the basis of these preclinical results, we believe JAK3 blockade by CP-690,550 has potential for therapeutically desirable immunosuppression in human organ transplantation and in other clinical settings.     

Seal lungs collapse during free diving: evidence from arterial nitrogen tensions

Arterial blood nitrogen tensions of free-diving Weddell seals (Leptonychotes weddelli) were measured by attaching a microprocessor-controlled blood pump and drawing samples at depth to determine how these marine mammals dive to great depths and ascend rapidly without developing decompression sickness. Forty-seven samples of arterial blood were obtained from four Weddell seals during free dives lasting up to 23 minutes to depths of 230 meters beneath the sea ice of McMurdo Sound, Antarctica. Peak arterial blood nitrogen tensions of between 2000 and 2500 millimeters of mercury were recorded at depths of 40 to 80 meters during descent, indicating that the seal's lung collapses by 25 to 50 meters. Then arterial blood nitrogen tensions slowly decreased to about 1500 millimeters of mercury at the surface. In a single dive, alveolar collapse and redistribution of blood nitrogen allow the seal to avoid nitrogen narcosis and decompression sickness.     

A remote irrigation monitoring and control system (RIMCS) for continuous move systems. Part B: field testing and results

Precision irrigation systems can have inherent errors that affect the accuracy of variable water application rates controllers, as well as affect the controllers’ performance when evaluated on different continuous move irrigation systems configurations. The objective of this study was to assess the performance of a remote irrigation monitoring and control system (RIMCS) installed on two separate linear move (LM) irrigation systems. The RIMCS varies water application rates by pulsing nozzles controlled by solenoids connected via relays to a single board computer (SBC) with wireless Ethernet connection to a remote server. The system also monitors irrigation system flow, pressure, position and wireless field sensor networks. The system was installed on a LM irrigation system in Prosser, Washington, USA and on a LM in the Nesson Valley of North Dakota, USA. For the LM at Prosser, four pre-defined irrigation patterns were imposed and variable rates were applied as a percentage of the nozzle base application rate. Each nozzle was pulsed across the span length and along the LM travel direction. For the LM at the Nesson Valley, a quadratic pattern was imposed pulsing banks of nozzles along the LM travel direction. Standard catch can tests were performed and the system performance was evaluated by comparing measured catch can water depths with pre-determined target values. The RIMCS accuracy was found to be in the range of the LM uniform water depth application uniformity coefficients of 88–96%. The RIMCS was successfully transferred to another LM in North Dakota as indicated by the relatively low variable rate application errors of –8.8 ± 8.1% and −0.14 ± 6.7% for the two spans.     

Bench‐top validation testing of selected immunological and molecular Renibacterium salmoninarum diagnostic assays by comparison with quantitative bacteriological culture

No gold standard assay exhibiting error‐free classification of results has been identified for detection of Renibacterium salmoninarum, the causative agent of salmonid bacterial kidney disease. Validation of diagnostic assays for R. salmoninarum has been hindered by its unique characteristics and biology, and difficulties in locating suitable populations of reference test animals. Infection status of fish in test populations is often unknown, and it is commonly assumed that the assay yielding the most positive results has the highest diagnostic accuracy, without consideration of misclassification of results. In this research, quantification of R. salmoninarum in samples by bacteriological culture provided a standardized measure of viable bacteria to evaluate analytical performance characteristics (sensitivity, specificity and repeatability) of non‐culture assays in three matrices (phosphate‐buffered saline, ovarian fluid and kidney tissue). Non‐culture assays included polyclonal enzyme‐linked immunosorbent assay (ELISA), direct smear fluorescent antibody technique (FAT), membrane‐filtration FAT, nested polymerase chain reaction (nested PCR) and three real‐time quantitative PCR assays. Injection challenge of specific pathogen‐free Chinook salmon, Oncorhynchus tshawytscha (Walbaum), with R. salmoninarum was used to estimate diagnostic sensitivity and specificity. Results did not identify a single assay demonstrating the highest analytical and diagnostic performance characteristics, but revealed strengths and weaknesses of each test.     

Fishing for conservation of freshwater tropical fishes in the Anthropocene

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