Structure determination of partially deuterated carotenoids from intrinsically labeled vegetables by HPLC-MS and 1H NMR

The structures of biosynthetic deuterated carotenoids in labeled vegetables were investigated: (all-E)-lutein and (all-E)-beta-carotene from spinach, and (all-E)-beta-carotene and (all-E)-alpha-carotene from carrots. The vegetables were grown hydroponically using a nutrient solution enriched with deuterium oxide (D(2)O) and were extracted using matrix solid-phase dispersion (MSPD). Deuterium enrichment in the carotenoid molecules was determined by liquid chromatography-mass spectrometry (LC-MS). (all-E)-Lutein and (all-E)-beta-carotene in spinach showed partial deuteration from (2)H(1) to (2)H(12), with the abundance maximum at (2)H(5). (all-E)-beta-Carotene and (all-E)-alpha-carotene from carrots showed partial deuteration from (2)H(1) to (2)H(17), with the abundance maximum at (2)H(11). The (1)H NMR spectra of the four deuterated carotenoids showed additional signals for all methyl groups and decreased signal intensity for the olefinic protons and the methylene protons in the ring. These differences are due to isotopic effects and are based on the substitution of protons by deuterium atoms. The deuteration was distributed randomly throughout the carotenoid molecules.     

Plasma and urine responses are lower for acylated vs nonacylated anthocyanins from raw and cooked purple carrots

The bioavailability of acylated vs nonacylated anthocyanins and the effect of cooking and dose on the comparative bioavailability were investigated in a clinical feeding study using purple carrots as the anthocyanin source. Treatments were purple carrots as follows: 250 g raw (463 micromol of anthocyanins: 400 micromol acylated, 63 micromol nonacylated), 250 g cooked (357 micromol of anthocyanins: 308.5 micromol acylated, 48.5 micromol nonacylated), and 500 g cooked (714 micromol of anthocyanins: 617 micromol acylated, 97 micromol nonacylated). Four of the five carrot anthocyanins were found intact in plasma by 30 min after carrot consumption and peaked between 1.5 and 2.5 h. Acylation of anthocyanins resulted in an 11-14-fold decrease in anthocyanin recovery in urine and an 8-10-fold decrease in anthocyanin recovery in plasma. Cooking increased the recovery of nonacylated anthocyanins but not acylated anthocyanins. Large dose size significantly reduced recovery of both acylated and nonacylated anthocyanins, suggesting saturation of absorption mechanisms.     

Antibacterial and antioxidant activities of essential oils isolated from Thymbra capitata L. (Cav.) andOriganum vulgare L

Antilisterial activities of Thymbra capitata and Origanum vulgare essential oils were tested against 41 strains of Listeria monocytogenes. The oil of T. capitata was mainly constituted by one component, carvacrol (79%), whereas for O. vulgare three components constituted 70% of the oil, namely, thymol (33%), gamma-terpinene (26%), and p-cymene (11%). T. capitata essential oil had a significantly higher antilisterial activity in comparison to O. vulgare oil and chloramphenicol. No significant differences in L. monocytogenes susceptibilities to the essential oils tested were registered. The minimum inhibitory concentration values of T. capitata essential oil and of carvacrol were quite similar, ranging between 0.05 and 0.2 microL/mL. Antioxidant activity was also tested, the essential oil of T. capitata showing significantly higher antioxidant activity than that of O. vulgare. Use of T. capitata and O. vulgare essential oils can constitute a powerful tool in the control of L. monocytogenes in food and other industries.     

Glomalin in aggregate size classes from three different farming systems

Glomalin was measured in soil from farming systems managed for 8 years by chisel tillage (CT), more intensive tillage for organic (ORG) production, and no tillage (NT) on Acrisols (FAO Soil Units) in the Mid-Atlantic region of the U.S. Whole soil and aggregate size classes of >2.00, 0.50–2.00 and 0.21–0.50 mm (macroaggregates), 0.05–0.21 mm (microaggregates), and <0.05 mm (fine material) were examined. Glomalin-related soil protein (GRSP) was extracted from 1-g samples (four plots per treatment) with 100 mM sodium pyrophosphate, pH 9.0, at 121 °C in three extraction cycles. Extracts were pooled and quantified by using the Bradford protein assay. Concentrations of GRSP and total carbon (C) in aggregates were linearly related across aggregate size classes for all treatments (GRSP = 0.101C + 0.56, r² = 0.95). No tillage had significantly greater whole soil GRSP than did CT or ORG (P = 0.01). Mean values for GRSP in aggregates of NT were higher than for CT or ORG aggregates by 0.53 and 0.66 mg g⁻¹ aggregates, respectively. There were no differences among treatments in GRSP concentrations in fine material. In NT the concentration of GRSP increased as aggregate size increased in contrast to the disturbed treatments, CT or ORG, where there were no differences in GRSP concentration across aggregate size fractions. Larger proportions of GRSP were distributed in macroaggregates of NT compared to CT and ORG in contrast to larger proportions in microaggregates of CT and ORG than in NT. Although soil disturbance in ORG farming is greater than for CT farming, both treatments had similar GRSP concentrations and distributions.     

Fate of diuron and terbuthylazine in soils amended with two-phase olive oil mill waste

The addition of organic amendments to soil increases soil organic matter content and stimulates soil microbial activity. Thus, processes affecting herbicide fate in the soil should be affected. The objective of this work was to investigate the effect of olive oil production industry organic waste (alperujo) on soil sorption-desorption, degradation, and leaching of diuron [3-(3,4-dichlorophenyl)-1,1-dimethylurea] and terbuthylazine [N2-tert-butyl-6-chloro-N4-ethyl-1,3,5-triazine-2,4-diamine], two herbicides widely used in olive crops. The soils used in this study were a sandy soil and a silty clay soil from two different olive groves. The sandy soil was amended in the laboratory with fresh (uncomposted) alperujo at the rate of 10% w/w, and the silty clay soil was amended in the field with fresh alperujo at the rate of 256 kg per tree during 4 years and in the laboratory with fresh or composted alperujo. Sorption of both herbicides increased in laboratory-amended soils as compared to unamended or field-amended soils, and this process was less reversible in laboratory-amended soils, except for diuron in amended sandy soil. Addition of alperujo to soils increased half-lives of the herbicides in most of the soils. Diuron and terbuthylazine leached through unamended sandy soil, but no herbicide was detected in laboratory-amended soil. Diuron did not leach through amended or unamended silty clay soil, whereas small amounts of terbuthylazine were detected in leachates from unamended soil. Despite their higher sorption capacity, greater amounts of terbuthylazine were found in the leachates from amended silty clay soils. The amounts of dissolved organic matter from alperujo and the degree of humification can affect sorption, degradation, and leaching of these two classes of herbicides in soils. It appears that adding alperujo to soil would not have adverse impacts on the behavior of herbicides in olive production.     

Comparison of the volatile composition in thyme honeys from several origins in Greece

Thyme honey is the most appreciated unifloral Greek honey in Greece as well as around the world. In an effort to investigate the headspace composition of this type of honey, 28 samples were analyzed by means of solid-phase microextraction coupled to a gas chromatography-mass spectrometry system. The botanical origin of the samples was ascertained by pollen analysis, and samples displayed relative frequencies of thyme pollen between 18 and 41%. A total of 62 compounds were isolated, and phenylacetaldehyde was the most abundant (32.9% of the total peak area). Possible botanical markers are 1-phenyl-2,3-butanedione (13.4%), 3-hydroxy-4-phenyl-2-butanone, 3-hydroxy-1-phenyl-2-butanone (14.7%), phenylacetonitrile (4.8%), and carvacrol (0.9%), since these compounds are found only in thyme honey. Additionally, high proportions of phenylacetaldehyde are also characteristic ( F = 12.282, p < 0.001). The average concentrations of seven compounds were significantly different ( p < 0.05), namely phenylacetaldehyde, acetophenone, octanoic acid, carvacrol, phenylethyl alcohol, nonanal, and hexadecane. Applying principal component analysis to the data, six components were extracted, explaining 85.4% of the total variance. The first component explained 46.2% of the total variance and was positively correlated to phenylacetaldehyde, nonanoic acid, acetophenone, decanoic acid, benzaldehyde, phenylacetonitrile, isophorone, and nonanal. The extracted components were used as variables to the discriminant analysis, which showed good discrimination, especially for samples from Crete. A leave-one-out classification showed 85.7% of cross-validated grouped cases correctly classified. These results are promising to establish a discrimination model for these geographical regions. This is crucial for local beekeeper corporations on their effort to produce honey with geographical origin label.     

The Influence of Pedology and Changes in Soil Moisture Status on Manganese Release from Upland Catchments: Soil Core Laboratory Experiments

Manganese (Mn) contamination of drinking water may cause aesthetic and human health problems when concentrations exceed 50 and 500 μg l^?1, respectively. In the UK, the majority of Mn-related drinking water supply failures originate from unpolluted upland catchments. The source of Mn is therefore soil, but the exact mechanisms by which it is mobilised into surface waters remain unknown. Elevated Mn concentrations in surface waters have been associated with the rewetting of dried upland soils and with conifer afforestation. We investigated these hypotheses in a laboratory experiment involving the drying and rewetting of intact soil cores (1,900 cm³ volume) of horizons of four representative soil type-land use combinations from an upland water supply catchment in southwest Scotland. Although no statistically significant effect of land use or soil type was detected on Mn concentrations in soil water, Mn release occurred from three soil horizons upon rewetting. Soil water Mn concentrations in the moorland histosol H2 (10–30 cm), the histic podzol H and Eh horizons increased from means of 5.8, 6.2 and 0.6 μg l^?1 prior to rewetting to maxima of 90, 76 and 174 μg l^?1 after rewetting, respectively. The properties of these three horizons indicate that Mn release is favoured from soil horizons containing a mixture of organic and mineral material. Mineral material provides a source of Mn, but relatively high soil organic matter content is required to facilitate mobilisation. The results can be used alongside soil information to identify catchments at risk of elevated Mn concentrations in water supplies.     

Genetic diversity in Cynara cardunculus revealed by AFLP markers: comparison between cultivars and wild types from Sicily*

Genetic diversity in 49 plants of 16 accessions representing one wild and two cultivated taxa of Cynara cardunculus L. (wild cardoon, cultivated cardoon and globe artichoke) was investigated using amplified fragment length polymorphic (AFLP) analysis. Four pairs of primers identified a total of 264 scorable loci, 196 of which were polymorphic. The number of markers scored per primer combination ranged from 41 to 107, with an average of 66 markers per primer combination. All the primer combinations detected polymorphism. The data were used for cluster analysis and AMOVA. The clusters obtained are in agreement with the current botanical classification and the differences among the taxa were substantial. The eco‐geographical groups within wild cardoon are clearly separated in relative subclusters, and reflect the geography of the collection areas. The six clones of the four cultivated artichoke varieties were clearly separated into four subclusters, corresponding to the current classification which is based on morphological traits. The results obtained may have a direct and important bearing on plant genetic resource conservation and management and on breeding.     

SNP Markers Discovery in Soybean with Use of Degenerate Oligolucleotide Primed PCR

There are several strategies that can be applied in SNP discovery, as for example the locus-specific amplification of target genome regions （Primmer et al., 2002; Van et al., 2004） or simultaneous assembly of anonymous sequences which are the product of whole genome shotgun sequencing （Webber and Myers, 1997） or reduced representation shotgun sequencing （Altshuler et al., 2000）. The majority of these methods are highly cost-prohibitive, however, and there is a necessity for development of new strategies that would be more suitable for small and medium-scale laboratories.     

Effects of Deficit Drip Irrigation Ratios on Cotton (Gossypium hirsutum L.) Yield and Fibre Quality

Increasing irrigation costs and declining water availability compel producers to adapt irrigation strategies for maximum crop yield and water use efficiency. A field trial was conducted to observe the effects of various drip irrigation ratios (IR-0, IR-25, IR-50, IR-75 and IR-100) on water use efficiency (WUE), the irrigation water use efficiency (IWUE), lint yield, yield components and fibre quality at two upland cotton varieties during 2004 and 2005. WUE was found to increase from 0.62 to 0.71 kg m⁻³ as the irrigation water applied was reduced from 100 % to 75 % of soil water depletion. Deficit irrigation of cotton with drip irrigation at 75 % treatment level (IR-75) did not decrease seed cotton yield and yield components during 2 years, with the exception of the number of bolls in 2005. Among fibre quality parameters, no significant differences in fibre length, fineness, uniformity index and elongation were detected between the 100 % and 75 % irrigation levels in 2005. The results revealed that irrigation of cotton with a drip irrigation method at 75 % level had significant benefits in terms of saved irrigation water without reducing yield, and high WUE indicated a definitive advantage of employing deficit irrigation under limited water supply conditions.