Increased abundance of patatins,lipoxygenase and miraculins in a thaxtomin A-habituated potato Russet Burbank somaclone with enhanced resistance to common scab

Potato common scab caused by the actinobacterium Streptomyces scabiei is characterized by the formation of corky lesions on tubers that reduce their marketability. Management of common scab is very complex and often ineffective under various environmental conditions. Using potato varieties that are more resistant to common scab remains one of the most efficient strategies to control this disease. However, very little is known about the factors associated with resistance to common scab. Somaclone RB9 regenerated from thaxtomin A-habituated potato Russet Burbank calli produced tubers more resistant to common scab than the original variety. Comparison of the RB9 tuber proteome with that of Russet Burbank using label-free quantitative proteomic analysis revealed changes in the accumulation of defence-related proteins from the patatin and lipoxygenase (LOX) families, which are involved in the metabolism of lipids, and of two miraculins of the Kunitz-type protease inhibitors family. The implication of LOX during common scab infection was studied using synchronized minitubers developed from leaf-bud cuttings. S. scabiei infection stimulated the accumulation of LOX in both Russet Burbank and RB9 minitubers, but this accumulation was intensified in RB9 minitubers. Infection also increased LOX activity in Russet Burbank and RB9 minitubers. However, LOX activity measured in noninfected RB9 minitubers was similar to that of infected Russet Burbank minitubers, indicating endogenous activation of LOX activity in RB9 minitubers. We discuss how increased LOX abundance and activity in the somaclone RB9 may contribute to improving tuber defence against common scab.     

Review on estimation of evapotranspiration from remote sensing data: From empirical to numerical modeling approaches

Different methods have been developed to estimate evapotranspiration from remote sensing data, from empirical approaches such as the simplified relationship to complex methods based on remote sensing data assimilation along with SVAT models. The simplified relationship has been applied from small spatial scale using airborne TIR images to continental scale with NOAA data. Assimilation procedures often require remote sensing data over different spectral domains to retrieve input parameters which characterize surface properties such as albedo, emissivity or Leaf Area Index. A brief review of these different approaches is presented, with a discussion about the main physical bases and assumptions of various models. The paper reports also some examples and results obtained over the experimental area of the Alpilles Reseda project, where various types of models have been applied to estimate surface fluxes from remote sensing data.     

Logging pattern and landscape changes over the last century at the boreal and deciduous forest transition in Eastern Canada

Forestry practices associated with the industrial era (since ~1900) have altered the natural disturbance regimes and greatly impacted the world’s forests. We quantified twentieth century logging patterns and regional scale consequences in three sub-boreal forest landscapes of Eastern Canada (117,000, 49,400 and 92,300 ha), comparing forestry maps depicting age and forest cover types for early industrial (1930) and present-day (2000) conditions. Results were similar for the three landscapes, indicating large-scale forest change during the twentieth century. In 1930, previous logging activities had been concentrated in the lowlands and along the main hydrographical network, as compared to a more even distribution over the landscapes in 2000, reflecting a decreasing influence of the environmental constraints on forest harvesting. In 1930, old-aged forests (>100 years) accounted for more than 75% of the unlogged areas of the three landscapes, as compared to less than 15% for the present-day conditions. Logging practices have thus inverted the stand age distribution of the landscapes that are currently dominated by young and regenerating stands. The 1930 forest cover types showed a clear relationship with elevation, with conifers located in the lowlands and mixed and deciduous stands restricted to the upper slopes. Between 1930 and 2000, 58–64% of the conifer areas transformed to mixed and deciduous forests, such that no clear altitudinal relationships remained in 2000. We conclude that twentieth century logging practices have strongly altered the preindustrial vegetation patterns in our study area, to the point that ecosystem-based management strategies should be developed to restore conifer dominance, altitudinal gradients, as well as the irregular structure inspired from old forest stands.     

Effects of binder type and binder addition on the growth of juvenile Palaemonetes varians and Palaemon elegans (Crustacea: Palaemonidae)

This investigation compared the effects of using two binders of no nutritional value, lignosol and agar, and the binding method, microbinding and microcoating, on the growth of juvenile Atlantic ditch shrimp, Palaemonetes varians, and rockpool prawn, Palaemon elegans. Shrimp were fed one basal diet which varied solely in binder type and method of inclusion (Diet A, with lignosol added by microbinding, Diet B, with agar added by microbinding, and Diet C with lignosol added by microcoating) for a period of 45 days. At the end of the experiment significant differences in the final wet weight were found between shrimps fed Diet A and Diet C and between shrimps fed Diet B and Diet C (P < 0.001), but no significant differences were found between Diet A and Diet B (P > 0.05). These results were verified for both species. Significant differences were found between the linear regression slopes of the three tested diets for P. varians (F _3,411 = 3.41; P < 0.04), and for P. elegans (F _3,431 = 10.51; P < 0.0003). Palaemon elegans grew faster than P. varians and at the end of the experiment significant differences were found between the final wet weight of the two species (F _3,842 = 48.17, P < 0.0001). The growth parameters analysed, weight gain (WG), thermal-unit growth coefficient (TGC), and food conversion rate (FCR) were always higher for P. elegans. Results indicate that use of either lignosol or agar, added to the diet by microbinding, is advisable.     

Food consumption patterns in an adult urban population in Beirut, Lebanon

OBJECTIVES: To investigate, measure and assess the food consumption pattern of the adult population living in Beirut, Lebanon, and to identify inadequate or excessive intake of food groups particularly linked to non-communicable diseases. DESIGN: A cross-sectional food consumption survey was conducted in 2001. Dietary habits were assessed by means of a quantitative food-frequency questionnaire. SETTING: Dietary survey of the urban population (Beirut). SUBJECTS: Random sample of 444 adult subjects (aged 25-54 years) in Beirut. RESULTS: The mean consumption of food by the study population was estimated to be 3,030 g day(-1), providing an energy intake of 2,523.57 kcal day(-1). Fat contributed 38.9% to the average daily energy intake, protein 13.4% and carbohydrates 47.2%. Mean consumption of fruits and vegetables was approximately 367 g day(-1) and 45.3% of subjects consumed less than the recommended 400 g daily. Cereals contributed 324.5 g day(-1), providing 35.0% of daily energy intake, with bread being the most highly consumed (146.2 g day(-1)) in this food group. The mean intake of meat and poultry products was 91.7 g day(-1) and provided 8.8% of daily energy intake, with consumption of butchery products especially beef being the highest (47.6 g day(-1)) followed by poultry (36.1 g day(-1)). A low consumption of fish was noted (19.7 g day(-1)), with 73.6% of subjects consuming less than the recommended 2 servings of fish per week. Dairy products contributed 243.1 g day(-1) or 10.9% of daily energy intake, and milk was the least consumed dairy product (56.8% of consumers). The intake of added fats and oils, excluding those in cooked recipes, was 20.4 g day(-1); olive oil was not used in cooking but was added solely at the table and its mean intake was 5 g day(-1). The consumption of butter was low (0.86 g day(-1)) and vegetable oil was the type of fat mostly used in cooking. The average intake of alcoholic beverages was low (33.6 g day(-1)), accounting for 0.7% of total energy intake. Women had significantly higher intakes of milk, dairy products, vegetables and coffee than men (P < 0.05). The percentage of women who reported the use of low-fat items was significantly higher than that of men. Younger people (25-34 years) ate significantly more meat, sugar, alcoholic beverages and soft drinks, and consumed significantly less cooked vegetables and legumes, than older ones (P < 0.05). CONCLUSIONS: The rather high contribution of fat to daily energy intake, the low intake of fish and the relatively high percentage of people consuming less than the recommended amount of fruits and vegetables observed in this study suggest that the adult Lebanese population is at increased risk of cardiovascular diseases, obesity and other non-communicable diseases, which provides the basis for recommending increased intakes of fish, particularly fatty fish, and fruits and vegetables.     

Climate change will affect the ability of forest management to reduce gaps between current and presettlement forest composition in southeastern Canada

Landscape Ecology - Forest landscapes at the boreal–temperate ecotone have been extensively altered. Reducing the gap between current and presettlement forest conditions through...     

BMC ecology image competition 2017: the winning images

For the fifth year, BMC Ecology is proud to present the winning images from our annual image competition. The 2017 edition received entries by talented shutterbug-ecologists from across the world, showcasing research that is increasing our understanding of ecosystems worldwide and the beauty and diversity of life on our planet. In this editorial we showcase the winning images, as chosen by our Editorial Board and guest judge Chris Darimont, as well as our selection of highly commended images. Enjoy!     

How climate change might affect tree regeneration following fire at northern latitudes: a review

New Forests - Climate change is projected to increase fire severity and frequency in the boreal forest, but it could also directly affect post-fire recruitment processes by impacting seed...     

Assessment of molecular detection of Fusarium circinatum in insects and passive spore traps in Pinus radiata plantations

Fusarium circinatum is the causal agent of pitch canker, a destructive disease that threatens natural and planted pine forests around the world. Although pitch canker has caused problems in Spain and Portugal, concerning Europe as a whole, the fungus is not established across the pine distribution area. Its dispersion by wind and/or insect vectors could nevertheless play a role in the colonization of currently uninfected stands. It is therefore crucial to develop monitoring tools for its detection. To this end, we assessed the molecular detection of the pathogen in environmental samples of bark beetles and passive spore traps, collected in two infected Pinus radiata plantations in Basque country, Spain. The spread pattern of F. circinatum was assessed by an experimental design that included insect and spore traps installed at the centre, at the edge and outside the plots. Our results showed that F. circinatum was detected in both types of samples, at almost all collection dates. In both type of samples, positive detections were mainly found at the centre of the plots, a lower proportion at the edge, and very few outside. This suggests that long‐distance dispersion of Fusarium circinatum does not rely on wind spore dispersal neither on insect flight. Our study also shows that molecular methods are a powerful tool to monitor the pathogen in environmental samples.