Microbial uptake of low‐molecular‐weight organic substances out‐competes sorption in soil

Low‐molecular‐weight organic substances (LMWOS) such as amino acids, sugars and carboxylates, are rapidly turned over in soil. Despite their importance, it remains unknown how the competition between microbial uptake and sorption to the soil matrix affects the LMWOS turnover in soil solution. This study describes the dynamics of LMWOS fluxes (10 µm ) in various pools (dissolved, sorbed, decomposed to CO₂ and incorporated into microbial biomass) and also assesses the LMWOS distribution in these pools over a very wide concentration range (0.01–1000 µm ). Representatives of each LMWOS group (glucose for sugars, alanine for amino acids, acetate for carboxylates), uniformly ¹⁴C‐labelled, were added to sterilized or non‐sterilized soil and analysed in different pools between 1 minute and 5.6 hours after addition. LMWOS were almost completely taken up by microorganisms within the first 30 minutes. Surprisingly, microbial uptake was much faster than the physicochemical sorption (estimated in sterilized soil), which needed 60 minutes to reach quasi‐equilibrium for alanine and about 400 minutes for glucose. Only acetate sorption was instantaneous. At a concentration of 100 µm , microbial decomposition after 4.5 hours was greater for alanine (76.7 ± 1.1%) than for acetate (55.2 ± 0.9%) or glucose (28.5 ± 1.5%). In contrast, incorporation into microbial biomass was greater for glucose (59.8 ± 1.2%) than for acetate (23.4 ± 5.9%) or alanine (5.2 ± 2.8%). Between 10 and 500 µm , the pathways of the three LMWOS changed: at 500 µm , alanine and acetate were less mineralized and more was incorporated into microbial biomass than at 10 µm , while glucose incorporation decreased. Despite the fact that the LMWOS concentrations in soil solution were important for competition between sorption and microbial uptake, their fate in soil is mainly determined by microbial uptake and further microbial transformations. For these substances, which represent the three main groups of LMWOS in soil, the microbial uptake out‐competes sorption.     

Responses to clomazone and 5-ketoclomazone by Echinochloa phyllopogon resistant to multiple herbicides in Californian rice fields

BACKGROUND: Late watergrass [Echinochloa phyllopogon (Stapf.) Koss.] is a major weed of Californian rice that has evolved P450-mediated metabolic resistance to multiple herbicides. Resistant (R) populations are also poorly controlled by the recently introduced herbicide clomazone. The authors assessed whether this cross-resistance was also P450 mediated, and whether R plants also had reduced sensitivity to photooxidation. Understanding mechanism(s) of resistance facilitates the design of herbicide management strategies to delay resistance evolution.RESULTS Ratios (R/S) of R to susceptible (S) GR(50) were near 2.0. [(14)C]Clomazone uptake was similar in R and S plants. Clomazone and its metabolite 5-ketoclomazone reduced chlorophyll and carotenoids in S more than in R plants. The P450 inhibitors disulfoton and 1-aminobenzo-triazole (ABT) safened clomazone in R and S plants. Disulfoton safened 5-ketoclomazone only in S plants, while ABT synergized 5-ketoclomazone mostly against S plants. Paraquat was more toxic in S than in R plants.CONCLUSION: Cross-resistance to clomazone explains failures to control R plants in rice fields, and safening by P450 inhibitors suggests that oxidative activation of clomazone is needed for toxicity to E. phyllopogon. Clomazone resistance requires mitigation of 5-ketoclomazone toxicity, but P450 detoxification may not significantly confer resistance, as P450 inhibitors poorly synergized 5-ketoclopmazone in R plants. Responses to paraquat suggest research on mechanisms to mitigate photooxidation in R and S plants is needed. Copyright (c) 2008 Society of Chemical Industry.     

Seeding date influence on camelina seed yield, yield components, and oil content in Chile

Camelina (Camelina sativa L.) was introduced for the first time in Chile in 2008 as a potential feedstock for biodiesel and also as high omega-3-containing seed oil for the salmon feed industry. The objective of this study was to determine the optimum seeding date to maximize camelina seed yield in South Central Chile. The experiment was conducted under dryland conditions in Chillán, El Carmen, Los Angeles, Gorbea, and Osorno in 2008 and in Chillán and Los Angeles in 2009. The experimental design was a RCB with a split-plot arrangement with four replicates, where the main plot was the seeding date (five dates) and the sub-plot the spring type cultivars (Gold of Pleasure, Suneson, and Blaine Creek). Seeding dates at each environment were targeted to 30 April, 15 May, 30 May, 30 June, and 30 July of 2008 and 2009. The combined analysis of variance indicated no cultivar main effect or interactions with cultivar. The date by environment interaction was significant for seed yield. There were no seed yield differences among seeding dates in Chillán and El Carmen. The first three seeding dates were the highest yielding in Los Angeles and Osorno, and only the first seeding date was significantly higher in seed yield in Gorbea. Highest seed yield at Los Angeles, Gorbea, and Osorno were 1995, 1310, and 2314 kg ha⁻¹. Seed oil content was not different among seeding dates in Chillán and El Carmen. Highest seed oil content occurred at Osorno and Gorbea on the first three seeding dates and ranged from 420 to 457 g kg⁻¹. Spring camelina cultivars are well adapted to South Central Chile as a winter annual crop when seeded before 15 May except in Osorno when seeded before 30 May. No disease or insectpests were observed except for Aster Yellow infestation at Chillán and Los Angeles. Camelina has great potential as an oilseed for biodiesel and as a source of omega-3 for the pharmaceutical industry but markets for it need to be developed locally for camelina to become an option for growers.     

Apparent electrical conductivity integrated from layered soil profiles

Time domain reflectometry (TDR) trace analysis aims at extracting the water content profile along TDR probes. This can be done by applying a TDR forward solver inversely. Thus, TDR‐trace inversion is basically an optimization problem. As in any optimization procedure, it is worthwhile to include as much a priori information as possible about the problem to be solved. In this study, we discuss the feasibility to use the apparent electrical conductivity as constraint for the TDR inversion. The resistors‐in‐parallel circuit can be used to integrate a multislice soil model to obtain the apparent electrical conductivity. We apply additionally Archie's law to link the water content of a particular slice with its electrical conductivity. We compare the results from this approach with measured TDR traces and show that the problem is solved exactly. Finally, we address the thin‐layer issue because thin layers with a high permittivity contrast result in a delay of the run time of an electromagnetic pulse. We test numerically whether a similar behavior can be observed for a thin layered electrical conductivity profile. Our results show that the thickness of the soil layer with respect to electrical conductivity has no effect on the apparent electrical conductivity. We conclude that the apparent electrical conductivity is appropriate as boundary condition in TDR inversion as long as a procedure is known to convert the water content of a slice to its electrical conductivity     

Urban land use types contribute to grassland conservation: The example of Berlin

Urbanisation is an important driver of biodiversity loss, also contributing to habitat loss and fragmentation of grasslands at the urban-rural interface. While urban green spaces are known to include many grassland habitats, it is uncertain to what extent urban land use types harbour grasslands of special conservation interest and whether patch characteristics and connectivity of these differ from grasslands on agricultural land. By relating the city-wide biotope mapping to the land use mapping of Berlin, Germany, we assessed (1) to which specific urban land use types the major grassland biotope types belong, (2) differences in patch characteristics and connectivity, and (3) the conservation value of grassland patches at a typological level by means of their legal protection status. Grasslands cover 5% of Berlin's surface, and 43% of that area is assigned to legally protected grassland types. The majority of legally protected grassland (71%) lies on urban land opposed to 29% on agricultural land. Airports and historic parks, which only cover 2% of land in Berlin, contain one-third of all protected dry grasslands. Wet grassland is more confined to agricultural land. In airports and agricultural areas, grassland patches are larger but of a more complex shape than those in historic parks. In airports, grassland patches show greater connectivity as they are situated in grassland-dominated surroundings. Grassland in historic parks appears to be more vulnerable due to smaller patch sizes and higher fragmentation. The example of Berlin demonstrates that the urban green infrastructure can clearly contribute to grassland conservation and may thus partially compensate for the decline of traditional grasslands in cultural landscapes. It will be important to involve residents and landowners in urban grassland conservation and management because most grassland of special conservation interest (57%) was found outside of conservation areas.     

Private residential urban forest structure and carbon storage in a moderate-sized urban area in the Midwest,United States

In conjunction with urbanization and its importance as a major driver of land-use change, increased efforts have been placed on understanding urban forests and the provisioning of ecosystem services. However, very little research has been conducted on private property and little is known about the structure and function of privately owned urban forests. This research examines the structure of and carbon storage services provided by private residential urban forests in a moderate-sized Midwestern city. The primary research questions are as follows: What is the structure of private urban forests, and how does it vary across parcels? How much carbon is stored in tree and soil pools of private urban forests, and how does carbon vary across parcels? Ecological inventories were conducted on 100 residential parcels within 14 Neighborhood and Homeowners Associations of varying size and development age. Tree species richness, diversity, density, and diameter distribution were determined on a per parcel basis and for the entire tree population sampled. Further, tree and soil carbon storage were determined for each parcel. Results of this research demonstrated large variability in per-parcel tree metrics. Twelve of the parcels sampled had two or fewer trees, while eleven had greater than 50 trees. Further, tree carbon storage ranged from no carbon to 11.22 kg C m^?2. Alternatively, soil carbon storage was less variable and averaged 4.7 kg C m^?2, approximately 1.9 times higher than the average carbon stored in trees (2.5 kg C m^?2). Management efforts aimed at maintaining or enhancing carbon storage and other ecosystem services should focus on both soil protection and maximizing services in living biomass. Our results demonstrate that sustaining tree-produced ecosystem services requires maintenance of large old trees and species diversity, not only in terms of relative abundance, but also relative dominance, and in combination, species–specific size distributions.     

Use of polymorphisms in the γ-gliadin gene of spelt and wheat as a tool for authenticity control

Partial sequencing of the γ-gliadin gene of 62 spelt and 14 soft wheat cultivars was performed. Fifty-six of the 62 spelt cultivars and 13 of the 14 soft wheat cultivars were shown to exhibit the typical spelt or soft wheat γ-gliadin sequence, respectively. Exceptions were ascribed to crossbreeding of soft wheat and spelt. Using the typical soft wheat γ-gliadin sequence, two alternative DNA-based analytical methods were developed for the detection and quantification of spelt flour "adulteration" with soft wheat. A simple and fast detection of soft wheat in spelt flours could be achieved by restriction fragment length (RFLP) analysis. In combination with lab-on-a-chip capillary gel electrophoresis (LOC-CE) the soft wheat proportion could be estimated. Heteroduplex formation served as additional confirmation for the presence of spelt besides soft wheat. Hence, RFLP-LOC-CE constitutes a perfect analysis tool for the quality control of cereal seeds and pure cultivars. A precise quantification of soft wheat "adulterations" in spelt flour down to 1% could be achieved by the developed real-time PCR method. The calibration parameters of the real-time PCR assay fulfilled the minimum performance requirements of the European Network of GMO (genetically modified organisms) Laboratories (ENGL).     

Equivalence or complementarity of soil‐solution extraction methods

Several methods are used for the extraction of soil solution. The objective of this study was to find out to what extent the different extraction methods yield complementary or equivalent information. Soil solutions were sampled once at 10 different forest sites in Germany, with 4 sampling points per site, using 5 different extraction methods. Concentrations of the major ions in the 1:2 extracts and the equilibrium soil‐pore solutions (obtained from percolation of field‐fresh soil cores) were generally lower than in desorption solutions, suction‐cup solutions, and saturation extracts. Surprisingly, the latter three methods generally yielded equivalent results. However, possible systematic differences between these methods could have been masked by the high small‐scale spatial variability within the sites.     

Percutaneous, ultrasonographically guided technique of catheterization of the abdominal aorta in calves for serial blood sampling and continuous arterial blood pressure measurement

The study describes a technique of ultrasonographically guided transcutaneous catheter implantation into the abdominal aorta of 29 6- to 8-week-old German Holstein calves. Catheters were implanted between the left transverse processes of L3 and L4, left in place for 2 days and used for serial blood sampling and continuous measurement of blood pressure. Complete cell counts and clinical examination were performed before, as well as 1 and 5 days after implantation. Catheterization was successful in all calves. The catheter was patent for blood sampling and pressure recordings at all times. A significant decrease in red blood cells was found in all animals after catheterization, which remained reduced for 5 days. Clinical signs of anaemia were absent. In conclusion, ultrasonographically guided catheterization of the abdominal aorta provides a continuous arterial access in calves, whereby the minimal invasive technique and the ultrasonographical guidance reduces accidental tissue trauma and pain for the animal.