Modeling Large Carnivore and Ranch Attribute Effects on Livestock Predation and Nonlethal Losses

Predator-livestock interactions are a major concern for both agriculture and conservation globally. Using retrospective survey data from 274 ranches in Wyoming, United States, we used information theory to model how ranch attributes and large carnivores influenced the timing, duration, and severity of livestock predation. We then used constrained ordination to understand how 1) landscape, weather, and animal features influence predation and 2) how livestock behavior and nonlethal loss relate to ranch attributes and large carnivores. Timing, duration, and severity of livestock predation were generally not explained by ranch size or number of counties but were explained by livestock type, livestock parturition (either timing or duration), and documented large carnivore loss. Addition of the large carnivore loss variable to global models always improved Akaike information criterion scores. Rangelands characterized as rough, forested, shrubby, or a public grazing allotment reportedly increased predation risk, in part, due to large carnivore exposure. Approximately two-thirds of participants noticed livestock nervousness if a predator was nearby, half of participants noted changes in livestock distribution patterns, and a quarter of participants noted a reduction in livestock grazing time. Nonlethal losses such as lower weight gains, lower conception rates, lower birth rates, and delayed birth season were reported by 27%, 19%, 12%, and 11% of participants, respectively. Ordination revealed separation between behavioral changes and nonlethal losses, attributed to large carnivore exposure. Parturition relative to livestock type was also strongly correlated to timing and duration of predation for cattle-only operations but not for operations with sheep. The predictive cattle predation-parturition model suggests that for each additional month of calving, producers should anticipate 21 additional d of predation. Understanding predator-livestock interactions relative to ranch and rangeland features, parturition, large carnivore exposure, and losses that extend beyond mortalities can assist in developing novel strategies to mitigate lethal and nonlethal losses.     

A generalized framework for AMOVA with multiple hierarchies and ploidies

The analysis of molecular variance (AMOVA) is a widely used statistical method in population genetics and molecular ecology. The classic framework of AMOVA only supports haploid and diploid data, in which the number of hierarchies ranges from two to four. In practice, natural populations can be classified into more hierarchies, and polyploidy is frequently observed in extant species. The ploidy level may even vary within the same species, and/or within the same individual. We generalized the framework of AMOVA such that it can be used for any number of hierarchies and any level of ploidy. Based on this framework, we present four methods to account for data that are multilocus genotypic and allelic phenotypic (with unknown allele dosage). We use simulated datasets and an empirical dataset to evaluate the performance of our framework. We make freely available our methods in a new software package, polygene , which is freely available at https://github.com/huangkang1987/polygene .     

A comparison of Shiga-toxin negative Escherichia coli O157 aflagellate and intimin deficient mutants in porcine in vitro and in vivo models of infection

Isolation of Shiga-toxin (Stx) positive Escherichia coli O157:H7 from commercially grown pigs has been reported. Furthermore, experimental infection studies have demonstrated that Stx-positive E. coli O157:H7 can persist in 12-week-old experimentally orally inoculated conventional pigs for up to 2 months and that persistence was not dependent upon intimin. We have shown that the flagellum of Stx-negative E. coli O157:H7 does not have a role to play in pathogenesis in ruminant models whereas, in poultry, the flagellum of E. coli O157:H7 was important for long-term persistent infection. The contribution of the flagellum of Stx-negative E. coli O157 in the colonisation of pigs was investigated by adherence assays on a porcine (IPI-21) cell line, porcine in vitro organ culture (IVOC) and experimental oral inoculation of conventional 14-week-old pigs. E. coli O157:H7 NCTC12900nal(r) and isogenic aflagellate and intimin deficient mutants adhered equally well to IPI-21 cells. In porcine IVOC association assays, E. coli O157:H7 NCTC12900nal(r) was associated in significantly higher numbers to tissues from the caecum and the terminal rectum than other sites. The aflagellate and intimin deficient mutants significantly adhered in greater numbers to more IVOC gastrointestinal tissues than the parent. Groups of 14-week-old pigs were dosed orally with 10(10)CFU/10ml of either E. coli O157:H7 NCTC12900nal(r) or isogenic aflagellate and intimin deficient mutants and recovery of each test strain was similar. Histological analysis of pig tissues at post mortem examination revealed that E. coli O157 specifically stained bacteria were associated with the mucosa of the ascending and spiral colon. These data suggest that colonisation and persistence of Stx-negative E. coli O157:H7 in pigs, involves mechanisms that do not require the flagellum or intimin.     

Predictability and preparedness in influenza control

The threat of pandemic human influenza looms as we survey the ongoing avian influenza pandemic and wonder if and when it will jump species. What are the risks and how can we plan? The nub of the problem lies in the inherent variability of the virus, which makes prediction difficult. However, it is not impossible; mathematical models can help determine and quantify critical parameters and thresholds in the relationships of those parameters, even if the relationships are nonlinear and obscure to simple reasoning. Mathematical models can derive estimates for the levels of drug stockpiles needed to buy time, how and when to modify vaccines, whom to target with vaccines and drugs, and when to enforce quarantine measures. Regardless, the models used for pandemic planning must be tested, and for this we must continue to gather data, not just for exceptional scenarios but also for seasonal influenza.     

Principles of uniapical and biapical radial deformity correction using dome osteotomies and the center of rotation of angulation methodology in dogs

OBJECTIVE: To describe the normal anatomic axis of the canine radius in 2 planes (frontal, sagittal), and report the use and efficacy of dome osteotomies for acute correction of canine antebrachial deformities. STUDY DESIGN: Retrospective study. SAMPLE POPULATION: Normal antebrachii (n = 20) radiographs were used as a reference, and 7 dogs with 9 radial angular limb deformities that were corrected by use of dome osteotomies. METHODS: Orthogonal radiographs of 20 normal antebrachii were used to determine normal ranges of frontal (FPA) and sagittal plane anatomic axes (SPA). Pre and postoperative radiographs of 7 dogs (9 radii) that had surgical correction of radial angular limb deformities by dome osteotomies were reviewed. Success at deformity correction into established normal ranges and to the normal contralateral side, if present, was determined. RESULTS: Normal ranges were FPA, 0-8 degrees and SPA, 8-35 degrees . There were 4 biapical and 5 uniapical deformities. FPA and SPA were corrected into normal range in 66% and 78% of affected limbs, respectively; however, only 44% of radii were corrected into normal ranges in both planes. CONCLUSIONS: Ranges for normal canine radial axes can be used as goals for angular limb correction when there is bilateral angular deformity. The dome osteotomy technique is advantageous in certain conditions for biplanar deformity correction. CLINICAL RELEVANCE: Dome osteotomies can be used to correct radial deformities in the frontal and sagittal planes, with certain advantages, but are heavily reliant on appropriate preoperative planning.     

Grazing Distribution and Diet Quality of Angus,Brangus, and Brahman Cows in the Chihuahuan Desert

Grazing distribution can be improved by using adapted cattle breeds that travel to distant areas of extensive pastures. A 2-yr study was conducted to evaluate grazing distribution and diet quality of Angus, Brangus, and Brahman cows (seven cows per breed group) in the Chihuahuan Desert during three seasons (winter, early summer, and late summer) using three pastures. Two GPS collars were randomly assigned to each breed group and cow positions were logged every 10 min for 10- to 14-d periods in each pasture (3 periods · season^-1). In 2008, breed groups were evaluated in separate pastures and data were analyzed as a 3 × 3 Latin square design. In 2009, all breed groups were evaluated at the same time in the same pastures. Fecal samples were collected in 2008 and analyzed using near infrared spectroscopy (NIRS) to estimate diet quality. If positions recorded when cows were resting were excluded, Brahman cows traveled greater distances per day than Angus cows throughout the study and greater (P ≤ 0.10) than Brangus cows in all but one season during 2009. No differences in average distance to water were detected (P &spigt; 0.10) among breed groups. During early summer in 2008 and early and late summer in 2009, Angus cows maintained a more linear grazing path (P ≤ 0.10) than Brangus or Brahman cows. Brahman cows displayed more sinuous grazing paths (P ≤ 0.10) than other breeds during early and late summer seasons in 2009. In 2008, no differences in crude protein content of diets were detected (P &spigt; 0.10) among breed groups during all seasons. Spatial movement patterns of Brahman cows appeared to differ from Angus and Brangus cows; however, there was no evidence to suggest that there was any advantage in use of areas far from water by any breed group.     

Effect of feeding increasing quantities of starch on glycaemic and insulinaemic responses in healthy horses

The aim of this study was to investigate the effect of increasing the intake of starch on the glycaemic and insulinaemic responses of horses. A cross-over study design was used in which four horses were fed increasing amounts of a compound feed (0.5–3.5 kg) to provide 0.3, 0.6, 0.8, 1.1, 1.4 and 2 g starch/kg bodyweight (BW)/meal. The glycaemic response increased with starch intake (P < 0.05), while feeding <1.1 g starch/kg BW resulted in a lowered response, compared to when 1.1–2 g starch/kg BW was fed (P < 0.01). The results suggested that insulin responses may be more appropriate to define the effect of feeding different starch levels than glycaemic responses. A starch intake of <1.1 g/kg BW/meal produced only moderate glucose and insulin responses, even though highly processed cereals were used. It is therefore recommended that a starch intake of <1.1 g/kg BW/meal or a meal size of 0.3 kg/100 kg BW (starch content of 30–40%) is used for horses.     

A comparison of the effects of two different doses of ketamine used for co-induction of anaesthesia with a target-controlled infusion of propofol in dogs

ObjectiveTo assess the cardiorespiratory and hypnotic-sparing effects of ketamine co-induction with target-controlled infusion of propofol in dogs.Study designProspective, randomized, blinded clinical study.AnimalsNinety healthy dogs (ASA grades I/II). Mean body mass 30.5 ± SD 8.6 kg and mean age 4.2 ± 2.6 years.MethodsAll dogs received pre-anaesthetic medication with acepromazine (0.03 mg kg^?1) and morphine (0.2 mg kg^?1) administered intramuscularly 30 minutes prior to induction of anaesthesia. Heart rate and respiratory rate were recorded prior to pre-medication. Animals were allocated into three different groups: Group 1 (control) received 0.9% NaCl, group 2, 0.25 mg kg^?1 ketamine and group 3, 0.5 mg kg^?1 ketamine, intravenously 1 minute prior to induction of anaesthesia, which was accomplished using a propofol target-controlled infusion system. The target propofol concentration was gradually increased until endotracheal intubation was possible and the target concentration at intubation was recorded. Heart rate, respiratory rate and noninvasive blood pressure were recorded immediately prior to induction, at successful intubation and at 3 and 5 minutes post-intubation. The quality of induction was graded according to the amount of muscle twitching and paddling observed. Data were analysed using a combination of chi-squared tests, Fisher's exact tests, Kruskal–Wallis, and anova with significance assumed at p< 0.05.ResultsThere were no significant differences between groups in the blood propofol targets required to achieve endotracheal intubation, nor with respect to heart rate, noninvasive blood pressure or quality of induction. Compared with the other groups, the incidence of post-induction apnoea was significantly higher in group 3, but despite this dogs in this group had higher respiratory rates overall.Conclusions and clinical relevanceUnder the conditions of this study, ketamine does not seem to be a useful agent for co-induction of anaesthesia with propofol in dogs.     

Investigation of azole resistance in the Ustilago maydis sterol demethylase mutant erg 40

Resistance to azole fungicides in Ustilago maydis (DC) Corda has been examined using the mutant erg 40, a newly isolated mutant Tri^R-1 and erg 40 revertants. Azole-induced growth arrest of the wild type did not support an obvious role for 3,6-diol in the mode of action has is clear for Saccharomyces cerevisiae Meyer ex Hansen. The level of microsomal P450 of erg 40 was identical to that of the parent, and reversion analysis showed no evidence of mutation in the sterol Δ⁵⁽⁶⁾ desaturase, as would be expected for a S. cerevisiae mutant accumulating 14α-methylfecosterol. Resistance appeared to be due to a single mutation in P450 14αdm. It is proposed that the orthologous forms of fungal sterol Δ⁵⁽⁶⁾ desaturases have varied responses when attempting to utilise 14α-methylated substrates.