Docosahexaenoic Acid Is Naturally Concentrated at the sn-2 Position in Triacylglycerols of the Australian Thraustochytrid Aurantiochytrium sp. Strain TC 20

The Labyrinthulomycetes or Labyrinthulea are a class of protists that produce a network of filaments that enable the cells to glide along and absorb nutrients. One of the main two Labyrinthulea groups is the thraustochytrids, which are becoming an increasingly recognised and commercially used alternate source of long-chain (LC, ≥C₂₀) omega-3 containing oils. This study demonstrates, to our knowledge for the first time, the regiospecificity of the triacylglycerol (TAG) fraction derived from Australian thraustochytrid Aurantiochytrium sp. strain TC 20 obtained using ¹³C nuclear magnetic resonance spectroscopy (¹³C NMR) analysis. The DHA present in the TC 20 TAG fraction was determined to be concentrated in the sn-2 position, with TAG (16:0/22:6/16:0) identified as the main species present. The sn-2 preference is similar to that found in salmon and tuna oil, and differs to seal oil containing largely sn-1,3 LC-PUFA. A higher concentration of sn-2 DHA occurred in the thraustochytrid TC 20 oil compared to that of tuna oil.     

Improving the protein content and composition of cereal grain

Cereals are important sources of protein for human nutrition but have low quality due to limitations in the amounts of essential amino acids, notably lysine. These deficiencies result from the low levels of these amino acids in the prolamin storage proteins and hence are exacerbated when high levels of nitrogen fertiliser are used to increase yield and total protein content.Genetic and genetic engineering strategies to increase both total protein content and the composition of essential amino acids have been employed. These include the exploitation of mutant high lysine genes and the use of transformation to either express additional proteins which are rich in lysine and/or methionine or to increase the free pools of these amino acids.     

Predicting the spread of the American grey squirrel (Sciurus carolinensis) in Europe: A call for a co-ordinated European approach

The introduction of the American eastern grey squirrel (Sciurus carolinensis) in Europe is causing a dramatic decline of the native European red squirrel (Sciurus vulgaris), due to competition. We used spatially explicit population dynamics models to illustrate the potential expansion of the grey squirrel from Italy, the only continental country with the species, into neighbouring countries. Simulations started with the known grey squirrel distributions in 1996 and modelled the spread for the next 100 years in two different scenarios. One “best case” in which a random seed crop pattern of poor, good and mast seed crops was simulated with concomitant effects on squirrel fecundity and mortality and one “worst case” scenario in which poor years were not included. In the best case scenario, it will take 30-40 years for grey squirrels to start invading the Alps and about 70-75 years to cross the border between Italy and France. First populations in Switzerland are predicted in 2051-2066. In the worst case scenario, the spread will be significantly faster: the species is predicted to reach France in 2026-2031 and Switzerland in 2031-2041. Removing two of the three populations of grey squirrel will likely postpone the invasion of Switzerland but not of France. Large areas of Europe contain potentially good habitat for grey squirrels, and expansion from Italy, to France, Switzerland and belong to most of Eurasia is simply a matter of time. This will represent a serious risk for the conservation of the native red squirrel and will have implications for national forest operations. However, a European policy towards introduced species is still lacking. There is therefore a need for a co-ordinated European approach to the management of the grey squirrel and other introduced species.     

Predicting use of habitat patches by spawning horseshoe crabs (Limulus polyphemus) along a complex coastline with field surveys and geospatial analyses

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Contribution of the natural biota associated with substrates to the nutritional requirements of the post-larval shrimp, Penaeus esculentus (Haswell), inhigh-density rearing systems

The contribution of epiphytes associated with physical substrates to the nutritional requirements of post‐larval shrimp, Penaeus esculentus Haswell, was determined in high‐density rearing systems (3000, 6000 and 11 000 m^?3). Stable isotope signatures of epiphytes on polyethylene mesh substrate, AquaMats? and tank walls were compared with shrimp signatures. Two methods were used: the determination of carbon and nitrogen natural abundance ratios; and ¹⁵N‐nitrogen enrichment ratios after the addition of ¹⁵N‐ammonium to tanks. Using the natural abundance technique and a simple mixing model, epiphytes were found to contribute substantially to the carbon requirements of post‐larval shrimp (39–53%). This was despite the addition of formulated feed at satiation levels. There was no indication of a reduced contribution of carbon from epiphytes to shrimp nutrition at higher shrimp densities. The lack of a difference in the ¹⁵N/¹⁴N ratios of the two food sources meant that mixing models could not be used to calculate the contribution of nitrogen from epiphytes vs. artificial feed to shrimp nutrition. Using the ¹⁵N‐nitrogenenrichment method, the amount of nitrogen contributed by epiphytes to shrimp nutrition over 24 h could be determined. This method showed that nitrogen from epiphytes was assimilated by shrimp. ¹⁵N‐enrichment methods provided a more accurate alternative to natural abundance techniques, particularly when the stable isotope signals ofthe food sources are similar. This experiment hasshown the benefits in providing substrates for P.esculentus in high‐density rearing systems to provide an additional food source for shrimp.     

Activin and its receptors in the goldfish

Activin (_AA, _AB and _BB) is a dimeric protein that belongs to the transforming growth factor- (TGF-) superfamily of growth factors and is involved in the regulation of many physiological and developmental processes. Recently, we have demonstrated that porcine activin stimulated goldfish gonadotropin-II (GTH-II) and growth hormone (GH) secretion from dispersed pituitary cells in static culture and pituitary fragments in perifusion. The action of activin in the goldfish is unique in that it has an acute stimulatory effect on the secretion of GTH-II and GH, whereas in mammals activin usually exhibits long-term stimulatory actions on FSH secretion. The action mechanism of activin is different from that of gonadotropin-releasing hormone (GnRH). Using domain-specific antibodies against mammalian activin subunits, we subsequently demonstrated the existence of immunoreactive activin subunits (_A and _B) in the goldfish ovary, testis, pituitary and brain, suggesting endocrine, paracrine and autocrine roles for activin in the regulation of goldfish reproduction. Both activin _A and _B subunits have been cloned from goldfish genome by polymerase chain reaction (PCR). Using the PCR fragments as probes, we have cloned a full length cDNA coding for activin _B subunit from the goldfish ovary. Both activin _A and _B subunits show high homology to those of other vertebrates with the _B subunit much more conserved (93 and 98% identity with human and zebrafish _B subunit, respectively). The identity of the cloned _B subunit was further confirmed by expression in the Chinese hamster ovary (CHO) cells and detection of the specific activity of activin in the culture medium. The messenger RNA of activin _B subunit is expressed in a variety of goldfish tissues including ovary, testis, brain, pituitary, kidney and liver, suggesting a wide range of physiological roles for activin in the goldfish. We have also cloned a full length cDNA coding for the activin Type IIB receptor from the goldfish ovary, suggesting that activin may have paracrine or autocrine actions on the ovarian functions. The identity of the cloned receptor was confirmed by specific binding of¹²⁵ I-activin on COS-1 cells transfected with the cloned Type IIB receptor.     

Rassen der gemeinen Kiefer

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Timber mobilization and habitat tree retention in low-elevation mixed forests in Switzerland: an inventory-based scenario analysis of opportunities and constraints

Timber use in central Europe is expected to increase in the future, in line with forest policy goals to strengthen local wood supply for CO₂-neutral energy production, construction and other uses. Growing stocks in low-elevation forests in Switzerland are currently high as exemplified by the Swiss canton of Aargau, for which an average volume of 346 ± 16 m³ ha⁻¹ was measured in the 3rd Swiss National forest inventory (NFI) in 2004–2006. While this may justify a reduction of growing stocks through increased timber harvesting, we asked whether such a strategy may conflict with the sustainability of timber production and conservation goals. We evaluated a range of operationally relevant forest management scenarios that varied with respect to rotation length, growing stock targets and the promotion of conifers in the regeneration. The scenarios aimed at increased production of softwood, energy wood, the retention of potential habitat trees (PHTs) and the conversion to a continuous cover management system. They were used to drive the inventory-based forest simulator MASSIMO for 100 years starting in 2007 using the NFI sampling plots in Aargau. We analyzed model outputs with respect to projected future growing stock, growth, timber and energy yield and harvesting costs. We found growing stock to drop to 192 m³ ha⁻¹ in 2106 if business-as-usual (BAU as observed between the 2nd and 3rd NFI) timber volumes were set as harvesting targets for the whole simulation period. The promotion of conifers and a reduction of rotation lengths in a softwood scenario yielded 25% more timber over the whole simulation period than BAU. An energy wood scenario that reduced growing stock to 200 m³ ha⁻¹ by 2056 and promoted the natural broadleaved regeneration yielded 9% more timber than BAU before 2056 and 30% less thereafter due to decreasing increments. The softwood scenario resulted in higher energy yield than the energy wood scenario despite the lower energy content of softwood. Retaining PHT resulted in a reduction of timber harvest (0.055 m³ ha⁻¹ yr⁻¹ per habitat tree) and higher harvesting costs. Continuous cover management yielded moderate timber amounts throughout the simulation period, yet sustainably. Considering climate change, we discuss the risks associated with favoring drought- and disturbance-susceptible conifers at low elevations and emphasize that continuous cover management must allow for the regeneration of drought-adapted tree species. In conclusion, our simulations show potential for short-term increases in timber mobilization but also that such increases need to be carefully balanced with future forest productivity and other forest ecosystem services.

     

Understorey plant community characteristics and natural hardwood regeneration under three partial harvest treatments applied in a northern red oak (Quercus rubra L.) stand in the Great Lakes-St. Lawrence forest region of Canada

Throughout eastern North America, stands of northern red oak (Quercus rubra L.) are undergoing successional replacement by shade-tolerant competitors. In the Great Lakes-St. Lawrence (GLSL) forest region, Q. rubra approaches the northern limit of its distribution, and ecosystem-specific silvicultural directives are needed to promote regeneration. We used an inductive, ordination-based approach to explore patterns in understorey plant community composition and microenvironment under different partial harvest treatments applied in a GLSL hardwood stand, and related these to characteristics of natural seedlings of Q. rubra and its competitors Acer rubrum and Acer saccharum.Two years after harvest, we established 2 m × 2 m plots in a stratified random design under 70% (n = 20) and 50% (n = 19) crown closure uniform shelterwood, group selection (n = 15), and uncut upper slope (n = 10) and lower slope (n = 10) areas. Percent cover of understorey vascular plant species, and a suite of microclimatic and edaphic variables were measured in each plot. Density, mean diameter and mean height of seedlings in the understorey (height <1 m) were determined in each plot for Q. rubra, A. rubrum and A. saccharum.Correspondence analysis (CA) ordination extracted two major axes explaining 21.6% of the total inertia in the species cover by plot matrix. Axis one separated uncut plots from the 50% shelterwood along a gradient of canopy cover associated with partial harvest treatments. Plot scores on axis one (13.2%) reflected a shift in dominance of the understorey from shade-tolerant Acer spp. to shade-intolerant colonizers, Rubus idaeus and Carex spp. Plot scores on axis one were directly (p < 0.05) associated with total understorey plant cover, litter depth, soil temperature and pH, but not with measures of plant diversity. Axis two (8.4%) separated plots from upper slope and lower slope areas, and plot scores were inversely associated (p < 0.05) with soil pH, phosphorus and nitrogen levels. Along axis two there was a shift in dominance from competitive (e.g. A. saccharum) to stress-tolerant (e.g. A. rubrum) species as soil fertility declined. Stepwise linear regression indicated seedling diameter in Q. rubra, A. rubrum and A. saccharum was inversely related to canopy cover. This suggests all three species benefited from partial harvest, although the relationship was strongest in Q. rubra. Patterns in understorey composition, microenvironment and seedling characteristics provide the basis to identify the main competitors of Q. rubra seedlings and adjust regeneration efforts along gradients of canopy closure and soil fertility under partial harvest systems within the GLSL forest region.