Polymorphism in the GBSS gene affects amylose content in US and European rice germplasm

The present study was conducted to investigate the relationship between waxy allelic forms and amylose in European and US rice germplasm. These allelic forms were defined according to the single-nucleotide polymorphisms (SNP) found in the leader intron 5′ splice site (G → T), exon 6 (A → C) and exon 10 (C → T). The combination of these three SNPs accounted for 89.2% of the variation in apparent amylose content in a pedigree of 85 US rice varieties and 93.8% of the variation among 279 accessions in a European germplasm collection. The allelic forms TAC and TCC were found in low amylose varieties. All varieties with intermediate levels of apparent amylose had the GCC allele. High levels of apparent amylose varieties had either the GAT and GAC allele. The sequence AGTTATA in the intron 1 distinguished the low amylose varieties from the other classes regardless of any other base changes. Intermediate amylose varieties can be distinguished from those with high apparent amylose by changes in either exon 6 or exon 10. However the simplest interpretation of the data is that the tyrosine/serine change in exon 6 is responsible for the lower levels of Granule bound starch synthase (GBSS) protein and thus lower levels of amylose in intermediate vs. high amylose verities.     

Isolation, structure characterization, and immunomodulating activity of a hyperbranched polysaccharide from the fruiting bodies of Ganoderma sinense

A polysaccharide (GSP-6B) with a molecular mass of 1.86 × 10? Da was isolated from the fruiting bodies of Ganoderma sinense . Chemical composition analysis, methylation analysis, infrared spectroscopy, and nuclear magnetic resonance spectroscopy were conducted to elucidate its structure. GSP-6B contains a backbone of (1→6)-linked-β-D-glucopyranosyl residues, bearing branches at the O-3 position of every two sugar residues along the backbone. The side chains contain (1→4)-linked-β-D-glucopyranosyl residues, (1→3)-linked-β-D-glucopyranosyl residues, and nonreducing end β-D-glucopyranosyl residues. An in vitro immunomodulating activity assay revealed that GSP-6B could significantly induce the release of IL-1β and TNF-α in human peripheral blood mononuclear cell (PBMC) and showed no toxicity to either PBMC or a human macrophage cell line THP-1. GSP-6B could also activate dendritic cells (DC) by stimulating the secretion of IL-12 and IL-10 from DC.     

Evaluation for chipping and tuber soft rot (Erwinia carotovora) resistance in potato clones from unilateral sexual polyploidization (2x × 4x)

The aim of this work is the evaluation of tetraploid potato clones with germplasm fromS. chacoense andS. phureja for chipping and resistance to tuber soft rot (Erwinia carotovora subsp.carotovora). Tetraploid potato clones were obtained via 2n eggs through 2x–4x crosses. Cytological mechanisms were investigated in the diploid hybrid 2n-egg producer used as parent in the unilateral sexual polyploidization scheme; the omission of the second meiotic division and cytokinesis failure at the end of meiosis were identified with a genetic consequence equivalent to second division restitution (SDR). Tuber marketable yield, specific gravity and chip-processing ability evaluated at harvest and after cold storage with and without reconditioning were higher in some clones as compared to theS. tuberosum tetraploid parent. Tuber soft rot resistance, contributed byS. chacoense, was successfully transferred to the4x level. After inoculation withErwinia carotovora subsp.carotovora and estimation of the rotted area, one tetraploid clone proved to be resistant and three partially resistant. The genetic value of exotic germplasm and sexual polyploidization strategy are discussed in relation to potato improvement.     

Effect of biochar amendment on soil‐silicon availability and rice uptake

Rice growth and its resistance to pests had been often constrained by soil‐silicon (Si) availability. The purpose of this study was to assess the potential of biochar soil amendment (BSA) to improve Si availability in paddy soils. A cross‐site field trail with BSA was conducted in six locations with different climatic and crop‐production conditions across S China. Plant‐available Si content before field‐trials establishment and after rice harvest, as well as Si content in rice shoot were determined. Varying with site conditions, plant‐available Si content of soil was observed to increase significantly with BSA in most sites. Significant increase in rice shoot Si was detected in four out of the six sites, which was well correlated to the concurrent increase in soil pH under BSA treatment. This study demonstrates an important role of BSA to improve Si availability and uptake by rice mainly through increasing soil pH of the acid and slightly acid rice soils.     

Differences in nitrogen‐assimilating enzyme activity in halophyte species are habitat‐related

The chemical form and content of available nitrogen (N) in salt marsh substrates varies considerably. On the western coast of Ireland, habitats designated as Ombrogenic Atlantic salt marshes were formed on ombrogenic peat substrate. The peat substrate in these systems has three times more ammonium than substrate from adjacent salt marsh habitats on sand and mud substrate. This study examined the extent to which the high concentration of ammonium in peat salt marsh substrate influences the N‐ assimilating enzyme activity of halophytes and the extent to which N metabolism differs between species. Specifically, this work investigated whether plants from peat salt marshes are more likely to assimilate ammonium than plants from non‐peat substrates. Four halophyte plant species—Armeria maritima, Aster tripolium, Plantago maritime, and Triglochin maritime—were sampled from various saltmarsh habitats including three sites on peat substrate and three on non‐peat substrate, comprising sand, mud and sand/mud. The activities of N‐metabolising enzymes—glutamine synthetase (GS), glutamate synthase, glutamate dehydrogenase (GDH), and nitrate reductase (NR)—were quantified in shoot and root parts. Root GS activity in Armeria maritima and shoot GS activity in Triglochin maritima were positively correlated with increasing soil ammonium levels. Root NR activity in Aster tripolium and shoot NR activity in Plantago maritima were significantly higher in plants grown on non‐peat substrates than peat substrates. The shoot : root GS activity ratio in Triglochin maritima on peat substrate was more than double the ratio on non‐peat substrates. It is concluded that all species tested displayed differences in N‐metabolising activities depending on the chemical form and/or concentration of N in the substrate, while three out of the four species were capable of taking advantage of the high levels of ammonium in peat substrates.     

Squamous cell carcinoma of the vagina and cervix in sheep - case report

This report describes the clinical and histopathological characteristics of a squamous cell carcinoma infiltrating the cervix and the vaginal wall, producing reproductive symptoms and subnormal fertility in an adult ewe. Necropsy showed a large (15-cm-long) neoplastic mass infiltrating the vaginal wall and the cervix. Histopathological examination revealed atypical squamous epithelial cords invading the basal membrane and dermis, round anaplastic cells, focal areas of necrosis, keratinisation of isolated cells, and pronounced infiltration by mononuclear cells around the cords. No squamous cell carcinoma of such localisation has been reported from sheep before. In humans, this tumour is the most common gynaecological malignancy in the world.     

Seeing the forest for the trees: Use of phages to treat bacterial tree diseases

Trees and woody plants can be attacked by many pests and pathogens either individually or as polymicrobial infections. In particular, infections caused by tree-specific bacterial pathogens have become more common during the last decade, causing serious concern for important tree and woody plant species in horticulture, urban environments, and forests. For example, Xylella and Pseudomonas bacteria are causing significant economic and ecological devastation throughout Europe in olive, cherry, and other stone fruits, mainly because of lack of efficient control methods and the emergence of bacterial resistance to traditional antimicrobial compounds such as copper and antibiotics. Hence, there is an urgent need for innovative approaches to tackle bacterial plant diseases. One way to achieve this could be through the application of biological control, which offers a more environmentally friendly and targeted approach for pathogen management. This review will explore recent advances in use of pathogen-specific viruses, bacteriophages (or phages), for the biocontrol of bacterial tree diseases. Phages are an important component of plant microbiomes and are increasingly studied in plant pathogen control due to their highly specific host ranges and ability to selectively kill only the target pathogenic bacteria. However, their use still poses several challenges and limitations, especially in terms of managing the bacterial diseases of long-lived trees. A particular insight will be given into phage research focusing on controlling Pseudomonas syringae pathovars, Erwinia amylovora, Xanthomonas species, Ralstonia solanacearum, and Agrobacterium tumefaciens. Recent milestones, current challenges, and future avenues for phage therapy in the management of tree diseases are discussed.     

Diverse phytoplasmas associated with maize bushy stunt disease in Peru

European Journal of Plant Pathology - Corn plants showing symptoms of midribs chlorosis, and leaf reddening, short internodes, ear proliferation, and plant growth reduction were collected in Peru...     

Simulation of corn yields in the Upper Great Lakes Region of the US using a modeling framework

We examined the utility of a site-based simulation model for corn (MAIZE) applied to the Upper Great Lakes Region (UGLR) of the United States for 1992–1996. To evaluate model outputs, we used a modeling applications system integrative framework (MASIF) to simulate corn yields in the UGLR. We divided the region into two ecological zones (upper UGLR-1 and lower UGLR-2) and compared MAIZE and USDA National Agriculture Statistics Service (NASS) yield estimates in each zone. There was greater agreement between MAIZE and NASS yields at lower yield values. As NASS yields increased, MAIZE yields also increased, but to a greater extent than did NASS yields. We conducted a mean spatial analysis of maize yield from 1992 to 1996. We also conducted a spatial analysis of 1994, 1995 and 1996. There are both spatial and temporal differences when yields are mapped.