Characterization of Ribulose-1,5-bisphosphate carboxylase-oxygenase activase (Rca) genes in durum wheat

Genetic Resources and Crop Evolution - Durum wheat (T. turgidum L. var. durum) is one of the most widely cultivated cereal crop in the Mediterranean area. Its production has been triggered by...     

水培法磷矿石对小麦生长的影响

Screening cultivars to grow under conditions of low phosphorus (P) availability and utilize P efficiently from compounds of low solubility in soils may be beneficial to overcome poor plant growth in P-deficient soils.The growth behavior and P utilization efficiency of seven wheat cultivars grown in hydroponics were studied,using rock phosphate as P source.The wheat cultivars grown for 30 days were significantly different in biomass accumulation,P uptake and P utilization efficiency.The dry matter production of all the cultivars was significantly correlated with P uptake,which in turn correlated to the drop in the root medium pH.The ranking of wheat cultivars on the basis of dry matter yield,P uptake and P utilization efficiency was Zamindar 80 ＞ Yccora ＞ C 271 ＞ WL 711 ＞ Barani 83 ＞ PARI 73 ＞ Rohtas.The cultivar Zamindar 80 appeared to possess the best growth potential in P-deficient soils.     

Late Glacial and Holocene buried black soils in Emilia (northern Italy): genetic and paleoenvironmental insights

Purpose

The existence of black horizons (BHs) is often highlighted in European soils, and in the Po River plain of northern Italy. Nevertheless, BH chronological frameworks and genetic models are still debated. The present study investigated the genesis of BHs in the eastern Po Plain where they are buried at various depths.

Materials and methods

Soil sequences were investigated with a multidisciplinary approach integrating geomorphologic, stratigraphic, pedologic, geochemical, isotopic, palynological, and radiometric analyses.

Results and discussion

The formation of the studied BHs was scattered over time from the Last Glacial Maximum to at least the middle Holocene. The new data indicate that BHs developed when the landscape was dominated by coniferous forest during conditions that were totally different from the current pedoclimatic setting. The recurrent presence of black particles indicates that this vegetation cover was systematically affected by fire episodes that induced soil degradation and mineralization processes of the original organic compounds, thus contributing to darkening of the upper soil horizons.

Conclusions

BH formation clearly coincided with cold time lapses. Evidence for repeated fire events (natural or human-induced?) provides insights for the controversial debate on early anthropogenic impacts on the environment.

     

Spatial and temporal patterns in summer ichthyoplankton assemblages on the eastern Bering Sea shelf 1996–2000

Larval and early juvenile fishes were sampled from the eastern Bering Sea (EBS) shelf during summer from 1996 to 2000. Data from these collections were used to examine spatial and temporal patterns in species assemblage structure and abundance. Cluster analyses based on Bray–Curtis dissimilarity coefficients were used to group species and stations according to similar abundance and species composition. Ordination techniques were used to verify groupings, and a non‐parametric stepwise procedure using a Spearman correlation coefficient (BIO‐ENV) was used to relate groupings to predominant environmental variables. These approaches revealed a pattern of station groupings that were generally related to bathymetry in 1996, 1997, 1999, and 2000, although no obvious relationship to geographic boundaries was observed in 1998. Significant differences in species associations were observed in 1997 and 1998, and depressions in abundance were also noted among many species between 1997 and 1999. A regional, full primitive equation model was used to simulate float trajectories on the EBS shelf in each year to better relate fish distributional observations to prevailing current patterns. Model results indicated general variations in flow in several years, although 1998 stood out with stronger northeast flow than in any of the other years examined. Observed disruptions of larval and early juvenile fish assemblages could be related to the strong El‐Niño event of 1997–98 in the EBS. If this idea is confirmed, our study suggests that larval and juvenile fish are sensitive and respond relatively quickly (1–2 yr) to environmental perturbations, and as such, may be timely indicators of environmental change.     

Validation of the accuracy of household reporting of subsistence fishing catch and effort: a Fijian case study

Abstract  The accuracy of household reporting of subsistence fishing catch and effort and seafood consumption on the Fijian island of Ono-i-Lau was studied. A creel survey was carried out concurrently to validate the household survey data. Reported estimates of fishing participation, effort, and fish consumption were not significantly different to the creel survey estimates. Householder's appeared to overestimate the number of fish from the most abundant family Lethrinidae, and underestimate rarer fish. However, there was no significant difference between the reported and observed contribution of the majority of finfish families and invertebrate taxa. The reported and observed catch rate estimates were not significantly different, indicating that Ono-i-Lau villagers are relatively accurate in their estimation of the number and size of fish from recalled catches.     

Electrical stunning followed by decapitation or chilling of African catfish (Clarias gariepinus): assessment of behavioural and neural parameters and product quality

The objective of this study was to assess neural and behavioural responses in farmed African catfish (Clarias gariepinus) upon electrical stunning in combination with decapitation or chilling. To assess the possibility of scaling up one or both experimental methods, two trials were performed in an experimental setting. The product quality of the collected samples was compared with the currently applied industrial method: live chilling. After electrical stunning in combination with decapitation, the fish showed spikes alternated with theta and delta waves on the EEG, followed by minimal brain activity after 20±10 s. The same traces on the EEGs were observed after electrical stunning in combination with chilling. Here, minimal brain activity occurred after 22±11 s. Within a confidence level of 95%, the percentage of African catfish that was effectively stunned after administration of an electrical current of 1.5 A dm⁻², 300 V (50 Hz a.c.), followed by decapitation or chilling was above 91%. The analysis yield and evolution of liquid loss showed significant (P<0.05) differences among the batches, which could be explained by the stunning method used. The course values of the pH in the different batches were significantly (P<0.05) dependent on the stunning method, sex and location (visceral or skin side). It is concluded that African catfish can be stunned effectively using electrical stunning in a water tank, followed by decapitation or chilling in ice. Dutch commercial processors prefer to combine electrical stunning with chilling in flake ice in a rotating tumbler, as the outer slime layer is then removed, which facilitates further processing.     

Investigation of the nutritional requirements of Australian snapper Pagrus auratus (Bloch & Schneider 1801): digestibility of gelatinized wheat starch and clearance of an intra-peritoneal injection of d-glucose

Two experiments were performed to investigate the digestibility and utilization of carbohydrate sources by Australian snapper Pagrus auratus. In the first experiment, snapper of two different size classes (110 and 375 g) were fed a reference diet containing no starch (REF) or diets containing 150 (PN15), 250 (PN25), 350 (PN35) or 450 g kg^?1 (PN45) of 100% gelatinized wheat starch to investigate the interactive effects of fish size and starch inclusion level on apparent organic matter (OM) or gross energy (GE) digestibility (ADC), post‐prandial plasma glucose concentration, hepatosomatic index (HSI) and liver or tissue glycogen content. A second experiment used a 72 h time course study to investigate the ability of larger snapper (300–481 g) to clear an intra‐peritoneal injection of 1 g d ‐glucose kg^?1 body weight (BW). Organic matter and GE ADCs declined significantly in both fish sizes as the level of starch increased (PN45energy small fishenergy large fish). There was no interaction between fish size and inclusion level with respect to GE or OM ADCs. Gross energy ADC for both sized fish was described by the linear function GE ADC=104.97 (±3.39)–0.109 (±0.010) × inclusion level (R²=0.86). Hepatosomatic index, liver and muscle glycogen concentrations were significantly elevated in both small and large snapper‐fed diets containing gelatinized starch compared with snapper fed the REF diet. Three‐hour post‐prandial plasma glucose concentrations were not significantly affected by fish size, inclusion level or the interaction of these factors (REF=PN15=PN25=PN35=PN45), and ranged between 1.60 and 2.5 mM. The mean±SD resting level of plasma glucose (0 h) was 2.4±1.1 mM. Circulating levels of plasma glucose in snapper peaked at 18.9 mM approximately 3 h after intra‐peritoneal injection and fish exhibited hyperglycaemia for at least 12–18 h. There were no significant differences between the plasma glucose concentrations of snapper sampled 0, 18, 24, 48 or 72 h after injection (0=18=24=48=72<12< 1<3=6 h), indicating snapper required almost 18 h to regulate their circulating levels of glucose to near‐basal concentrations. Australian snapper are capable of digesting moderate levels of gelatinized wheat starch; however, increasing the dietary content of starch resulted in a reduction in OM and GE digestibility. Smaller snapper appear to be less capable of digesting gelatinized starch than larger fish, and levels above 250 and 350 g kg^?1 of diet are not recommended for small and large fish respectively. Snapper subjected to an intra‐peritoneal injection of d ‐glucose have prolonged hyperglycaemia; however, the post‐prandial response to the uptake of glucose from normally digested gelatinized starch appears to be more regulated.     

Characterization of the DNA nucleotide sequences in the genome of red sea bream iridoviruses isolated in Korea

The nucleotide sequences of DNA fragments amplified by polymerase chain reaction (PCR) from four different genomic regions of nine red sea bream iridoviruses (RSIVs) isolated from different species of fish, different areas and in different years in Korea were compared with the reported reference sequences. One isolate, RSIV Namhae, showed 100% homology to the reference sequences, while the other eight isolates, which appeared to contain identical nucleotide sequences, showed 96.6–98.9% homology with reference sequences depending upon the target regions of PCR gene amplification. However, differences in nucleotide sequences were not apparent between the RSIVs isolated in different locations, in different years or in different host species. We also cloned and sequenced the 3′ end flanking region (K1) of the DNA polymerase (DPOL) gene using the cassette ligation-mediated PCR method. This sequence was 4436-bp long and possessed two open reading frames (ORF-1 and ORF-2) oriented in opposite directions. The putative proteins encoded by these two ORFs could not be characterized by comparison with the proteins of other species in the data banks. The presence of the ribonucleotide reductase small subunit (RNRS) gene at the 3′ end of the K1 region allowed us to determine that these two genes, RNRS and DPOL, are separated 5508 bp and oriented in the same direction in the genome of RSIV. Moreover, it is of interest that a PstI-restriction fragment, of which the sequence but not the location within the RSIV genome had previously been reported, is located at nucleotide positions from 1096 to 2054, extending from within the ORF-1 region, spanning the intervening sequence between ORF-1 and ORF-2, and extending into the ORF-2 region. Various repeating sequences up to 86 bp were present at the 3′ ends of ORFs, especially within the nucleotide sequences at the 3′ terminus of ORF-2. No similarities were detected when the DNA sequences of the K1 region were compared to the DNA sequences of a repetitive element in the genome of other iridoviruses.     

Prey selectivity and diel feeding chronology of juvenile chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon in the Columbia River plume

We studied salmon feeding selectivity and diel feeding chronology in the Columbia River plume. Juvenile chinook and coho salmon were caught by trawling at 2–3 h intervals throughout a diel period on three consecutive days (21–23 June 2000) at stations located 14.8 and 37 km offshore from the mouth of the Columbia River. A total of 170 chinook salmon were caught at the inshore and 79 chinook and 98 coho salmon were caught at the offshore station. After each trawl, potential prey were sampled at different depths with 2–3 different types of nets (1‐m diameter ring net, bongo net, neuston net). Despite the variability in zooplankton abundance, feeding selectivity was surprisingly constant. Both salmon species fed selectively on larger and pigmented prey such as hyperiid amphipods, larval and juvenile fish, various crab megalopae, and euphausiids. Hyperiid amphipods were abundant in the salmon diets and we hypothesize that aggregations of gelatinous zooplankton may facilitate the capture of commensal hyperiid amphipods. Small copepods and calyptopis and furcilia stages of euphausiids dominated the prey field by numbers, but were virtually absent from salmon diet. Juvenile chinook salmon, with increasing body size, consumed a larger proportion of fish. Stomach fullness peaked during morning hours and reached a minimum at night, suggesting a predominantly diurnal feeding pattern. In general, both chinook and coho salmon appear to be selective, diurnal predators, preying mostly on large and heavily pigmented prey items, in a manner consistent with visually oriented, size‐selective predation.