Impact of farm management on expression of early mortality syndrome/acute hepatopancreatic necrosis disease (EMS/AHPND) on penaeid shrimp farms in Thailand

Asian shrimp farming industry has experienced massive production losses due to a disease caused by toxins of Vibrio bacteria, known as early mortality syndrome/acute hepatopancreatic necrosis disease (EMS/AHPND) for the last 5 years. The disease can cause up to 100% cumulative pond mortality within a week. The objective of this study was to identify factors associated with AHPND occurrence on shrimp farms. A case–control study was carried out on shrimp farms in four provinces of Thailand. Factors related to farm characteristics, farm management, pond and water preparation, feed management, post‐larvae (PL) shrimp and stock management were evaluated. Multivariable logistic regression analysis identified factors affecting AHPND occurrence at the pond level. Chlorine treatment, reservoir availability, use of predator fish in the water preparation, culture of multiple shrimp species in one farm and increased PL stocking density contributed to an increased risk of AHPND infection, while delayed first day of feeding, polyculture and water ageing were likely to promote outbreak protection. Additionally, the source of PL was found to be associated with AHPND occurrence in shrimp ponds, which requires further study at the hatchery level. Identification of these factors will facilitate the development of effective control strategies for AHPND on shrimp farms.     

Determining the disaggregated economic value of irrigation water in the Musi sub-basin in India

In this paper the residual method is used to determine the disaggregated economic value of irrigation water used in agriculture across crops, zones and seasons. This method relies on the belief that the value of a good (its price by its quantity) is equal to the summation of the quantity of each input multiplied by its average value. By applying this method to the Musi sub-basin; a subdivision of the Krishna basin in India, it was found that the value of irrigation water use is not equated across the crops, zones and seasons. The reasons why there is no sinlge value of irrigation water use are suggested. As farmers do not have perfect knowledge, do not all possess the same resource base, plant different crops for a variety of reasons (some for a financial return on land instead of water and others for sustenance), possess different crop rotation practices and are possibly riks adverse, they all value water differently. However, the results need to be interpreted with care as the crop with the lowest return to water is probably not the one to be sacrificed if water is restricted, since farmers plant crops for a variety of reasons (and sometimes not for the highest return to water that they can achieve).     

Field and laboratory transmission studies of haemic neoplasia in the soft‐shell clam,Mya arenaria,from Atlantic Canada

A two‐year laboratory and field study was initiated in 2001 in response to mass mortalities associated with haemic neoplasia (HN) in 1999 in Prince Edward Island (PEI) soft‐shell clams, Mya arenaria. A laboratory proximity experiment (cohabitation) and an inoculation challenge were conducted with clams and mussels (Mytilus edulis). Three field exposure experiments were also conducted, in which naive clams were held in sediment (in trays) or out of sediment (in mesh bags) at three high HN prevalence sites on PEI. There was a conversion to HN positive in clams in the proximity experiment and in clams injected with whole blood and cell‐free homogenate, but not at statistically significant levels. No mussels or control clams became HN positive. There was a significant conversion to HN positive in as little as 24 and 58 days after transfer with clams held out of sediment and in sediment, respectively. The laboratory and field experiments’ results suggest that HN‐infected clams are spreading the disease through water from infected clams to naïve individuals and via transplantation from affected to unaffected sites. Some environmental conditions (e.g. abnormally high water temperature and hypoxia‐induced sea lettuce [Ulva lacteus] invasion) may make clams susceptible to infections or exacerbate the proliferation of HN.     

Three scales of temporal resolution from automated soil respiration measurements

Soil respiration (R_s) is a combination of autotrophic and heterotrophic respiration, but it is often modeled as a single efflux process, influenced by environmental variables similarly across all time scales. Continued progress in understanding sources of variation in soil CO₂ efflux will require development of R_s models that incorporate environmental influences at multiple time scales. Coherence analysis, which requires high temporal frequency data on R_s and related environmental variables, permits examination of covariation between R_s and the factors that influence it at varying temporal frequencies, thus isolating the factors important at each time scale. Automated R_s measurements, along with air, soil temperature and moisture were collected at half hour intervals at a temperate forest at Harvard Forest, MA in 2003 and a boreal transition forest at the Howland Forest, ME in 2005. As in other temperate and boreal forests, seasonal variation in R_s was strongly correlated with soil temperature. The organic and mineral layer water contents were significantly related to R_s at synoptic time scales of 2–3 days to weeks, representing the wetting and drying of the soils as weather patterns move across the region. Post-wetting pulses of R_s were correlated with the amount of precipitation and the magnitude of the change from pre-wet-up moisture content to peak moisture content of the organic horizon during the precipitation events. Although soil temperature at 8–10 cm depth and R_s showed strong coherence at a 24-h interval, calculated diel Q₁₀ values for R_s were unreasonably high (6–74) during all months for the evergreen forest and during the growing season for the deciduous forest, suggesting that other factors that covary with soil temperature, such as canopy assimilatory processes, may also influence the diel amplitude of R_s. Lower diel Q₁₀ values were obtained based on soil temperature measured at shallower depths or with air temperature, but the fit was poorer and a lag was needed to improve the fit (peak R_s followed peak air temperature by several hours), suggesting a role for delayed substrate supply from aboveground processes to affect diel patterns of R_s. High frequency automated R_s datasets afford the opportunity to disentangle the temporal scales at which environmental factors, such as seasonal temperature and phenology, synoptic weather events and soil moisture, and diel variation in temperature and photosynthesis, affect soil respiration processes.     

Rice Germin-Like Proteins: Allelic Diversity and Relationships to Early Stress Responses

Germin-like protein (GLP) markers were associated with quantitative trait loci (QTL) for resistance to the rice blast pathogen, Magnaporthe oryzae in multiple rice (Oryza sativa) mapping populations. Twelve paralogous OsGLP gene family members are located within the physical QTL region on chromosome 8, and gene silencing studies suggest that they contribute collectively to the resistance phenotype. We compared sequence and expression profiles of OsGLP alleles in two resistant and two susceptible parental rice lines to find functional polymorphisms that correlated with the resistant phenotype. Based on coding and promoter sequences, the genes belong to two germin subfamily groups (GER3 and GER4). OsGLP members from both subfamilies were constitutively expressed and developmentally regulated in all cultivars. Transient induction above constitutive levels was observed for some OsGLPs, especially GER4 subfamily members, at early time points after M. oryzae infection and mechanical wounding. Varying 5′ regulatory regions and differential expression of some family members between resistant and susceptible cultivars corresponded with differential hydrogen peroxide (H₂O₂) accumulation after the same stimuli. OsGLP of both GER subfamilies localized to the plant cell wall. The protein location and early gene induction suggest that OsGLPs protect rice leaves at early stages of infection before fungal penetration and subsequent ingress. Our data suggest that regulation of OsGLP genes defines resistant versus susceptible phenotypes.     

Cloning and expression of pigeon IFN-γ gene

This is the first paper describing the cloning of pigeon IFN-γ gene (PiIFN-γ) and the analysis of the in vitro expressed recombinant protein. The PiIFN-γ gene was identified by RT-PCR as a 498 bp, fragment coding for a precursor protein of 165 amino acids instead of 164 amino acids, as observed in the other avian species. The recombinant protein was expressed in vitro by an eukaryotic system and the biological properties of the cytokine were tested using a chicken macrophage cell line. The high degree of amino acid and nucleotide identity, shared with the ChIFN-γ, and the fact that the pigeon protein was functional on chicken cells, indicates a cross-reactivity between pigeon and chicken IFN-γ. The detection of the PiIFN-γ could represent an useful instrument in understanding the role played by this cytokine in immune response related to vaccinations and infectious diseases in the pigeon.     

Establishment of native <Emphasis Type="Italic">Eucalyptus pauciflora</Emphasis> and exotic <Emphasis Type="Italic">Eucalyptus nitens</Emphasis> on former grazing land

The success of tree plantings in agricultural landscapes within dry and variable rainfall regions is often below expectations. The aims of this study were to investigate techniques for establishing a local native species (Eucalyptus pauciflora) and an exotic species (E. nitens) in the Midlands of Tasmania, a tree-denuded region that has been grazed for over 100 years in Australia. We established trials at the Sorrel Springs and Woodland Park properties. We compared six establishment techniques: control; understorey nurse planting; spot burn; mulch; tree-guard and; self-watering tree-guard. Three months, 1 and 6 years after planting we measured tree height, health index and mortality. At Sorrell Springs tree-guarded treatments had greater height than other treatments at year one, but there were no effects of treatment at year six on height, health or mortality. At Woodland Park mulch, burn and tree-guarded treatments had greater height 1 and 6 years after planting. At year six tree-guarded treatments had lower mortality than other treatments. At Sorrell Springs height of E. nitens was greater than E. pauciflora at year one but not at year six. At Woodland Park height of E. nitens was generally greater at year six but having almost double the incidence of mortality relative to E. pauciflora. We conclude that expensive tree-guarding is only warranted where high browse pressure is expected and that on such sites species with tough leaves that are resistant to browsing should be considered. Further that in environments marginal for growing trees, best practice establishment technique is generally as effective as additional treatments of understorey nurse planting, spot burning or mulching.