Genetic variation in HTLV-III/LAV over time in patients with AIDS or at risk for AIDS

In a study of genetic variation in the AIDS virus, HTLV-III/LAV, sequential virus isolates from persistently infected individuals were examined by Southern blot genomic analysis, molecular cloning, and nucleotide sequencing. Four to six virus isolates were obtained from each of three individuals over a 1-year or 2-year period. Changes were detected throughout the viral genomes and consisted of isolated and clustered nucleotide point mutations as well as short deletions or insertions. Results from genomic restriction mapping and nucleotide sequence comparisons indicated that viruses isolated sequentially had evolved in parallel from a common progenitor virus. The rate of evolution of HTLV-III/LAV was estimated to be at least 10(-3) nucleotide substitutions per site per year for the env gene and 10(-4) for the gag gene, values a millionfold greater than for most DNA genomes. Despite this relatively rapid rate of sequence divergence, virus isolates from any one patient were all much more related to each other than to viruses from other individuals. In view of the substantial heterogeneity among most independent HTLV-III/LAV isolates, the repeated isolation from a given individual of only highly related viruses raises the possibility that some type of interference mechanism may prevent simultaneous infection by more than one major genotypic form of the virus.     

Prediction of leaching fraction from soil properties,irrigation water and rainfall

Summary Fine textured soils (> 40% clay) form a major proportion of irrigated soils in northeastern Australia. More than half these soils are irrigated with groundwater, some of which has high salinity (electrical conductivity > 2.9 mS cm^–1). A simple prediction of salt leaching was sought to aid in land management decisions.An empirical model of leaching fraction is presented based on rainfall and easily measured soil properties related to hydraulic conductivity. The model is based on data from 766 soils. To account for the complexity of interactions between soil properties, the data was stratified into groups based on clay content and mineralogy (expressed here as CEC/clay ratio). This allowed simple linear regressions using ESP and rainfall to be developed to predict leaching fraction.When applied to irrigated soils, a salinity correction term (EC_{rain+irrigation}/EC_rain) was used to account for the flocculation effects of the increased salinity of irrigation waters. The model gave good predictions of leaching fraction for two irrigation regions with widely differing soil properties (Fig. 4).     

Insights into an undescribed high-elevation lake (6,170 m a.s.l.) on Volcán Llullaillaco: A physical and microbiological view

1. High elevation lakes are extreme ecosystems and serve as sentinels of various global changes.
2. An expedition to Volcán Llullaillaco in 1996 discovered an unstudied high-elevation lake (6,170 m a.s.l.) that probably was formed as a result of the past eruptive events or climatic processes such as glacial retreat in the lake basin.
3. This article describes an initial physical characterization of the lake and its microbial communities derived from two sampling expeditions in 2013 and 2016.
4. The microbial community in the lake, with an area between 1.2 and 1.4 ha and a depth of 6.8 m, was dominated by Proteobacteria, Actinobacteria and Haloarchaea. In addition, 26 bacterial isolates were identified within the genera Subtercola, Xylophilus, Rhodanobacter, Mesorhizobium and Pseudomonas.
5. Lago Llullaillaco is one of the highest recorded lakes in the world, and this study highlights the unique microbial diversity of this aquatic ecosystem and the importance of its preservation to understand the complex biological processes under polyextreme conditions.

     

Multiple watershed alterations influence fish community structure in Great Plains prairie streams

Stream fish distributions are commonly linked to environmental disturbances affecting terrestrial landscapes. In Great Plains prairie streams, the independent and interactive effects of watershed impoundments and land cover changes remain poorly understood despite their prevalence and assumed contribution to declining stream fish diversity. We used structural equation models and fish community samples from third‐order streams in the Kansas River and Arkansas River basins of Kansas, USA to test the simultaneous effects of geographic location, terrestrial landscape alteration, watershed impoundments and local habitat on species richness for stream‐associated and impoundment‐associated habitat guilds. Watershed impoundment density increased from west to east in both basins, while per cent altered terrestrial landscape (urbanisation + row‐crop agriculture) averaged ~50% in the west, declined throughout the Flint Hills ecoregion and increased (Kansas River basin ~80%) or decreased (Arkansas River basin ~30%) to the east. Geographic location had the strongest effect on richness for both guilds across basins, supporting known zoogeography patterns. In addition to location, impoundment species richness was positively correlated with local habitat in both basins; whereas stream‐species richness was negatively correlated with landscape alterations (Kansas River basin) or landscape alterations and watershed impoundments (Arkansas River basin). These findings suggest that convergences in the relative proportions of impoundment and stream species (i.e., community structure) in the eastern extent of both basins are related to positive effects of increased habitat opportunities for impoundment species and negative effects caused by landscape alterations (Kansas River basin) or landscape alterations plus watershed impoundments (Arkansas River basin) for stream species.     

Evaluating the relationship between yearling walleye,Sander vitreus,electrofishing catch‐per‐unit‐effort and density in northern Wisconsin lakes

Recruitment declines of walleye, Sander vitreus (Mitchill), observed in some northern Wisconsin lakes have resulted in management actions to evaluate and rehabilitate populations. An effective index for estimating relative abundance of yearling walleye is required. The objectives herein were : (a) to evaluate the relationship between yearling walleye electrofishing CPUE and density in northern Wisconsin lakes; (b) to test for the influence of lake‐specific factors on electrofishing catchability of yearling walleye; and (c) to develop an index whereby electrofishing CPUE can be used to quantify yearling walleye relative abundance. Yearling density was significantly positively related to electrofishing CPUE on a long‐term dataset from Escanaba Lake as well as a dataset including several lakes combined. Electrofishing catchability of yearling walleye was negatively related to lake‐surface area but was not related to other lake‐specific variables. This index can provide an efficient method to continue monitoring natural recruitment and also to evaluate survival of stocked walleye.     

Optics of arthropod compound eye

The extent to which light can escape from one ommatidium into its neighbors in the compound eye has been examined by recording from single receptors during stimulation of single facets. In the "apposition" eye of the drone honeybee and locust, optical interaction is extremely small. In the "superposition" eye of the crayfish, more than half the light captured by the average cell gets in through neighboring facets, even when screening pigments are in the fully lightadapted position.