<Emphasis Type="Italic">In silico</Emphasis> genomic subtraction guides development of highly accurate,DNA-based diagnostics for <Emphasis Type="Italic">Ralstonia solanacearum</Emphasis> race 3 biovar 2 and blood disease bacterium

New rapid diagnostic methods are urgently needed to discriminate the quarantine pathogen Ralstonia solanacearum (Rs) race 3 biovar 2 (R3B2) from other populations of Rs that lack the adaptation to cause bacterial wilt disease in temperate regions. We used an in silico bioinformatic approach to identify several genome sequences potentially specific to R3B2 strains. Primer sets were designed to PCR-amplify sequences in these regions, and four sets were ultimately shown to be >99% accurate for detection of R3B2 strains. On the basis of these results, several primers were designed to enable development of a loop-mediated isothermal amplification assay that was rapid, technologically simple, and essentially 100% accurate for identification of R3B2 when applied to a comprehensive collection of geographically diverse Rs strains. We fortuitously found that a sequence in one of the “R3B2-specific” regions has ~90% identity to a sequence present in strains of the blood disease bacterium (BDB), a member of the Rs species complex that infects banana. Alignments of these sequences allowed design of a second PCR primer set that proved 100% accurate for identification of BDB strains when tested on the 22 BDB strains available to us. These results demonstrate the power of in silico genomic subtraction for rapid identification of population-specific DNA sequences and for the development of simple, reliable detection methods for Rs subpopulations.     

Sequence of the domestic duck (Anas platyrhynchos) growth hormone-encoding gene and genetic variation in the promoter region

The duck growth hormone encoding gene and its promoter region were amplified by polymerase chain reaction (PCR). A total of 5.25 kb were cloned and sequenced. Duck growth hormone (GH) consists of five exons and four introns and is structurally similar to mammalian and chicken GH gene. Although the distal region of duck GH promoter showed no similarity to chicken and turkey promoters, the proximal region of the promoter contained two putative Pit‐1 binding sequences, and showed similarity to chicken and turkey GH promoters. Genetic variation was detected at five positions of the promoter region. The results of this study indicate that the expression of duck GH is likely regulated in a similar manner to that of chicken GH via enhancer‐type cis‐acting elements and the presence of genetic variation in the duck GH gene may be applicable to marker‐assisted selection.     

Accumulation and depletion kinetics of erythromycin in rainbow trout (Oncorhynchus mykiss)

Erythromycin is an antimicrobial agent recommended for the control and treatment of diseases caused by gram-positive bacteria. Few studies, however, have determined the metabolic and pharmacokinetic aspects of this antimicrobial agent in fish. The aim of the present study, therefore, was to determine the accumulation and depletion time of erythromycin after administration of medicated feed containing 52 mg kg(-1) body weight day(-1) for 8 days in rainbow trout (Oncorhynchus mykiss). Results were analyzed following the European Agency for Evaluation of Medicinal Products guidelines. We measured a withdrawal time of 187°C-day (°C-day=water temperature×days), lower than the value (500°C-day) recommended by Council Directive 2004/28/EC for veterinary medicinal products. Our results provide data to establish therapeutic regimens for the use of erythromycin in aquaculture.     

沙棘果渣中黄酮醇苷的结构研究

在沙棘果皮、种子、果渣中或果实处理过程中产生的液体中可能含有数量可观的珍贵天然抗氧化剂。人们对寻找可代替合成抗氧化剂的天然抗氧化剂的兴趣逐渐上升,大量的研究也因此产生。据记载,沙棘（Hippophae rhamnoides）果实是黄酮醇丰富的来源,黄酮醇由异鼠李素的糖苷,五羟黄酮,4,5,7三羟黄酮醇组成。同时,还发现其它天然抗氧化剂浓度也很高,如原花色素,抗坏血酸,生育酚和类胡萝卜素。果汁从浆果中提取,引流至剩余的滤饼,     

A Comparison of the Effects of Two Prey Enrichment Media on Growth and Survival of Pacific Bluefin Tuna,Thunnus orientalis,Larvae

Three experiments were conducted to investigate the growth, survival, and standardized cohort biomass of Pacific bluefin tuna, Thunnus orientalis, larvae fed nutritionally enhanced prey during the first week of feeding using two commonly used, commercially available enrichment media, AlgaMac Enrich and Marine Glos. T. orientalis larvae exhibited exponential growth in standard length and dry weight. The daily specific growth rates in length and weight are the first reported for T. orientalis larvae and the averages ranged from 3.8 to 4.1% and 27.5%, respectively, for larvae in the AlgaMac treatment and from 4.1 to 6.1% and 31.5%, respectively, in the Marine Glos treatment. Average daily growth rates in length ranged from 0.16 to 0.23 mm/d for larvae in the AlgaMac treatment and from 0.17 to 0.27 mm/d for those in the Marine Glos treatment. Daily growth rates in length were similar to those reported for other tuna larvae reared in the laboratory but slower than most published estimates for larval tunas in situ at similar water temperatures. Mean prey number per gut was positively associated with mean prey level in the tank. Both enrichment media appear to be good sources of nutritional improvement of planktonic prey for T. orientalis larvae.     

Beaver dams,streamflow complexity,and the distribution of a rare minnow,Lepidomeda copei

Freshwater fishes are threatened globally, and often too little is known about threatened species to effectively guide their conservation. Habitat complexity is linked to fish species diversity and persistence, and degraded streams often lack habitat complexity. Beaver Castor spp., in turn, have been used to restore streams and increase habitat complexity. The northern leatherside chub Lepidomeda copei is a rare, small‐bodied, drift‐feeding minnow that has anecdotally been observed to use complex habitats associated with beaver dams in the western United States. To investigate this anecdote, we conducted fish and habitat surveys, the latter focusing on quantifying habitat complexity, in a sub‐basin of the Upper Snake River Basin in the USA. Complementary generalised linear model and path analyses revealed that northern leatherside chub occurred more often at sites with complex streamflows, and streamflows were more complex when beaver dams were present and pools were deeper. Northern leatherside chubs were also more likely to occur when temperatures were warmer, aquatic macrophytes were abundant and stream channels were narrow and deep. The linkage between chubs, complex streamflows and beaver dams needs to be evaluated more broadly to completely understand its role in the rangewide status of the species. However, it does suggests that increased use of beaver reintroductions and dam analogues for stream restoration could be a boon for the northern leatherside chub, but such efforts should be monitored to determine their effectiveness to help adapt beaver‐based restoration approaches to best benefit the species.     

Three<Emphasis Type="Italic">Orobanche</Emphasis> species newly found on crops in israel

Orobanche amethystea Thuill.,O. loricata Reichenb. andO. pubescens D’Urv. were found to parasitize the roots of cultivated plants in Israel.Orobanche pubescens is known from the local flora, and was now found to cause damage in parsley fields and toTropaeolum majus L. (nasturtium) in ornamental gardens.Orobanche amethystea andO. loricata are known as occasional weeds in Europe and were recently found for the first time in Israel.Orobanche amethystea densely populated vetch fields in Israel, andO. loricata was found in ornamental gardens. A key for the identification ofOrobanche species in cultivated areas in Israel is given, based on morphological features. http://www.phytoparasitica.org posting Jan. 13, 2002.     

Identification ofTomato Mottle Taino Begomovirus strains in Cuban potato fields

The presence of a begomovirus in potato plants with yellow mottle symptoms was determined for the first time in Cuba. The incidence of typical begomovirus-like symptoms in potato plants in some regions of Havana province (Güira de Melena, San José de las Lajas, Güines and Boyeros) during the growing seasons from 1992 to 1998 was in general low. However, in some cultivars belonging to the National Program for Potato Genetic Improvement, the incidence reached 100%. Yield losses, determined in 1992 and 1994, ranged as high as 19% to 56.33% depending on the cultivar. Characterization of the causal agent was done by light microscopy, host range (graft and mechanical transmission), DNA hybridizations, polymerase chain reaction, and restriction fragment length polymorphism analysis. Nucleotide sequence of the amplified fragments revealed the presence ofTomato mottle Taino virus. The virus was transmittedvia tubers and has been detected in mixed infections withPotato virus X and withPotato leaf roll virus. http://www.phytoparasitica.org posting Oct. 20, 2003. The first two authors contributed equally to this work.     

Physiologic response of six plant species grown in two contrasting soils and irrigated with brackish groundwater and RO concentrate

With declining availability of fresh surface water, brackish groundwater is increasingly used for irrigation in the arid and semi-arid southwestern United States. Brackish water can be desalinated by reverse osmosis (RO) but RO results in a highly saline concentrate. Disposal of concentrate is a major problem hindering augmentation of inland desalination in arid areas. The objective of this study was to determine the effect of texture and saline water irrigation on the physiology of six species (Atriplex canescens (Pursh) Nutt., Hordeum vulgare L., Lepidium alyssoides A. Gray, Distichlis stricta (L.) Greene, Panicum virgatum L., and ×Triticosecale Wittm. ex A. Camus [Secale?×?Triticum]). All species were grown in two contrasting soils and irrigated with the same volume of control water (EC 0.9?dS/m), brackish groundwater (4.1?dS/m), RO concentrate (EC 8.0?dS/m). Several plant physiological measurements were made during the growing season including height, number of stem nodes, average internodal length, number of leaves, leaf length, photosynthetic rates, stomatal conductance rates, transpiration rates, leaf temperatures, stem water potential, and osmotic potential. P. virgatum was the only species that showed significant decrease in plant height and growth with texture and irrigation water salinity. Except for A. canescens and L. alyssoides, number and length of leaves decreased with increasing salinity for all species. No significant differences were observed for photosynthetic, stomatal conductance, and transpiration rates by soil texture or irrigation water salinity. Stem water potential and osmotic potential did show some significant influence by soil texture and irrigation water salinity. Based on the results, RO concentrate can be reused to grow all six species in sand; however, growth of all species showed some limitations in clay. Local reuse of RO concentrate along desert margins with regular soil and environmental quality monitoring can accelerate implementation of inland desalination for sustaining food security.