Effect of two whole-crop rice (Oryza sativa L.) cultivars on methane emission and Cu and Zn uptake in a paddy field fertilized with biogas slurry

A field experiment was carried out to evaluate the effect of two whole-crop rice (Oryza sativa L.) cultivars, TULT and Takanari, on methane (CH₄) emission in a paddy field fertilized with biogas slurry (BS) at rates of 0 (NF), 100 (BS100) and 300 (BS300) kg nitrogen (N) ha^?1, in comparison with chemical fertilizer CF100 (100 kg N ha^?1). Takanari produced significantly higher biomass (P < 0.001) than TULT and showed significantly (P < 0.01) lower CH₄ emission than TULT. BS applications caused higher CH₄ emission (52 ± 27 and 80 ± 19 g m^?2 in BS100 and BS300, respectively) than did CF100 (42 ± 18 g m^?2) and NF (28 ± 10 g m^?2) in TULT. In contrast, there was no significant difference in CH₄ emission in Takanari among the treatments (26 ± 2, 26 ± 2, 32 ± 4, 29 ± 8 g m^?2 in NF, CF100, BS100 and BS300, respectively). Methane oxidizing bacteria (MOB) showed significantly (P < 0.05) higher populations in Takanari than in TULT at harvest, which might be due to the higher root biomass (10.3 ± 2.2 g hill^?1) in Takanari than in TULT (8.9 ± 1.8 g hill^?1). MOB was significantly correlated with tiller number (R² = 0.176*) and plant biomass (R² = 0.242*). BS application showed higher copper (Cu) uptake in Takanari while it was not high in TULT. In contrast, it showed no difference in zinc (Zn) uptake in both varieties. Uptake of Cu was not different between the two varieties, while uptake of Zn in the grain was higher in TULT than in Takanari. The present study suggests that CH₄ emission deriving from BS application in paddy field can be mitigated by selecting an appropriate cultivar, like Takanari. However, care should be taken for heavy metal uptake in selecting cultivars.     

Bioactive Alkaloids from the Sea: A Review

In our ongoing search for bioactive substances from marine organisms, novel alkaloids have been isolated. Pinnatoxins and pinnamine, potent shellfish poisons, were purified from the Okinawan bivalve Pinna muricata. Pinnatoxins activate Ca²⁺ channels. Halichlorine was isolated from the marine sponge Halichondria okadai. This compound inhibits the induction of VCAM-1. Drugs that block VCAM-1 may be useful for treating coronary artery diseases, angina, and noncardiovascular inflammatory diseases. Pinnaic acids, which are cPLA₂ inhibitors, were also obtained from P. muricata. Interestingly, the structures of pinnaic acids are closely related to that of halichlorine. Norzoanthamine hydrochloride, isolated from the colonial zoanthid Zoanthus sp., suppresses decreases in bone weight and strength in ovariectomized mice, and could be a good candidate for an osteoporotic drug. Ircinamine, purified from the marine sponge Ircinia sp., has a reactive thioester. Aburatubolactams, inhibitors of superoxide anion generation, were isolated from Streptomyces sp. This article covers the bioactive marine alkaloids that have been recently isolated by this research group.     

Genetic analysis of ion-beam induced extremely late heading mutants in rice

Two extremely late heading mutants were induced by ion beam irradiation in rice cultivar ‘Taichung 65’: KGM26 and KGM27. The F₂ populations from the cross between the two mutants and Taichung 65 showed clear 3 early: 1 late segregation, suggesting control of late heading by a recessive gene. The genes identified in KGM26 and KGM27 were respectively designated as FLT1 and FLT2. The two genes were mapped using the crosses between the two mutants and an Indica cultivar ‘Kasalath’. FLT1 was located on the distal end of the short arm of chromosome 8. FLT2 was located around the centromere of chromosome 9. FLT1 might share the same locus as EHD3 because their chromosomal location is overlapping. FLT2 is inferred to be a new gene because no gene with a comparable effect to that of this gene was mapped near the centromere of chromosome 9. In crosses with Kasalath, homozygotes of late heading mutant genes showed a large variation of days to heading, suggesting that other genes affected late heading mutant genes.     

Disinfectant resistance of Salmonella in in vitro contaminated poultry house models and investigation of efficient disinfection methods using these models

Salmonellaenterica subsp. enterica (Salmonella) shows disinfectant resistance by forming biofilms on solid surfaces. However, efficient disinfection methods to eliminate Salmonella biofilms from farms have not yet been examined in detail. In this study, more than 80% of Salmonella strains from farms in Yamagata prefecture, Japan, were biofilm producers. Regardless of the extent of their biofilm formation ability, their biofilms were highly resistant to hypochlorous acid on plastic surfaces. To establish efficient disinfection methods in farms, we developed in vitro Salmonella-contaminated poultry house models by depositing dust on ceramic and stainless-steel carriers in poultry houses for one month and culturing a representative Salmonella strain on the carriers. Biofilm-like structures, including Salmonella-like cells, were observed on the models by scanning electron microscopy. Salmonella was not efficiently removed from the models even by cleaning with a surfactant at 25/65°C and disinfection with quaternary ammonium compound or hypochlorous acid at 25°C; on the contrary, viable Salmonella cells increased in some tests under these conditions, suggesting that these models successfully simulate the highly persistent characteristics of Salmonella in farms. However, the persistent bacterial cells were markedly decreased by soaking in 65°C surfactant followed by rinsing with 80°C water, additional cleaning using chlorine dioxide or disinfection with dolomitic lime, suggesting the effectiveness of these methods against Salmonella in farms. Since many different disinfection conditions may be easily tested in laboratories, our models will be useful tools for establishing effective and practical disinfection methods in farms.     

Reproduction affects partitioning between new organs of a pulse of 15N applied during seed ripening in Fagus crenata

Seasonal internal nitrogen (N) cycling is an important strategy for trees to uncouple growth from N acquisition. While N uptake, allocation and storage has been intensively studied in association with leaf phenology and vegetative growth, influence of reproduction on these key processes is still poorly understood. Therefore, we applied pulse ¹⁵N labelling to three fruiting and three non-fruiting trees in a 92-year-old Fagus crenata forest on 18 July and traced ¹⁵N content per organ dry mass (¹⁵N_excess) in all new shoot organs from the upper crowns periodically until leaf fall. The amount of ¹⁵N_excess recovered in the whole new shoots in fruiting trees did not differ from non-fruiting individuals, although up to 70% of ¹⁵N_excess was recovered in fruits of fruiting trees but 87% in leaves of non-fruiting individuals. In addition, dramatic increase in ¹⁵N_excess amount in nuts was accompanied by about twofold increase in nut N content. These results indicate that new N uptake from the soil contributed greatly to seed ripening, which in turn resulted in less allocation to leaves in fruiting trees. In non-fruiting individuals, on the other hand, ¹⁵N_excess allocated to leaves was not accompanied by concomitant increase in leaf N content because biomass growth had ceased when ¹⁵N was applied. These results suggest that N uptake in the late growing season contributed to internal N storage in non-fruiting trees. These reproduction-related variations in seasonal N cycle have implications for N dynamics in the plant–soil system during environmental change.

     

Changes in above- and belowground biomass in early successional tropical secondary forests after shifting cultivation in Sarawak,Malaysia

Uncertainties in the rate of biomass variation with forest ageing in tropical secondary forests, particularly in belowground components, limit the accuracy of carbon pool estimates in tropical regions. We monitored changes in above- and belowground biomass, leaf area index (LAI), and biomass allocation to the leaf component to determine the variation in carbon accumulation rate with forest age after shifting cultivation in Sarawak, Malaysia. Nine plots in a 4-year-old forest and fourteen plots in a 10-year-old forest were monitored for 5 and 7 years, respectively. Forest and plant part biomass were calculated from an allometric equation obtained from the same forest stands. Both above- and belowground biomass increased rapidly during the initial decade after abandonment. In contrast, a much slower rate of biomass accumulation was observed after the initial decade. LAI also increased by approximately double from the 4-year-old to 10-year-old forest, and then gently increased to the 17-year-old forest. We also found that allocation variation in leaf biomass and nitrogen was closely related to the rate of biomass accumulation as a forest aged. During the first decade after abandonment, a high biomass and nitrogen allocation to the leaf component may have allowed for a high rate of biomass accumulation. However, reduction in those allocations to leaf component after the initial decade may have helped to suppress the biomass accumulation rate in older secondary forests. Roots accounted for 14.0–16.1% of total biomass in the 4–17-year-old abandoned secondary forests. We also verified the model predicted values for belowground biomass by Cairns et al. (1997) and Mokany et al. (2006), although both models overestimated the values throughout our data sets by 45–50% in the 10-year-old forest. The low root:shoot ratio in the secondary forests may have caused this overestimation. Therefore, our results suggest that we should modify the models to estimate belowground biomass considering the low root:shoot ratio in tropical secondary forests.