Standardization of a set of microsatellite markers for use in cultivar identification studies in olive (Olea europaea L.)

The comparability of eight olive microsatellite profiles in 17 cultivars generated by four laboratories using different DNA genotyping platforms was tested. In total, 54 alleles were identified, from a minimum of 3 alleles (DCA15) to a maximum of 12 (DCA9), averaging 6.75 alleles per marker. A representative sample of the olive genetic variability can be obtained by selecting a relatively low number of sufficiently different cultivars. Initial comparison of the data generated, revealed the presence of a few discrepancies between the laboratories, most of them due to easily identifiable rounding errors. However, 94.9% of the genotypes were in agreement between at least two laboratories after the harmonisation of the results and only in seven cases it was not possible to determine the genotype. No discrepancies between the four laboratories were observed at all in 106 genotypes (77.9%), while 18 (13.2%) showed discrepancies at one allele and 12 (8.8%) at two alleles. Most of the differences (73.8%) were due to results obtained by only one different laboratory each time. Markers DCA3, DCA8, DCA11, DCA13, DCA14 and DCA15 showed the highest concordance percentage between datapoints scored from all partners, while DCA4 and DCA9 produced less concordant results. Forty-three percent of the discrepancies were due to heterozygous/homozygous misreadings, that is often related to the presence of stutter peaks. The determining factors for obtaining reproducible results seem to be the utilization of unique sources of plant material, the employment of the same reference cultivars by all the laboratories, the standardization of PCR conditions and the selection of the markers with the most robust amplification pattern.     

Size selection by diamond- and square-mesh codends in multi-species Mediterranean demersal trawl fisheries

Mediterranean demersal trawl fisheries traditionally operate using small diamond-shape meshes in the codend, which tend to retain almost all animals. We investigated the effect of mesh configuration on the size selectivity of nine species (the scaldfish Arnoglossus laterna, the broad-tail shortfin squid Illex coindettii, the European hake Merluccius merluccius, the red mullet Mullus barbatus, the Norway lobster Nephrops norvegicus, the common pandora Pagellus erythrinus, the deepwater rose shrimp Parapenaeus longirostris, the Mediterranean horse mackerel Trachurus mediterraneus and the poor-cod Trisopterus minutus capelanus) commonly captured in the Mediterranean demersal trawls. Two codends having meshes with the same opening (ca. 38 mm) but different mesh configuration (DM38: diamond-mesh and SM38: square-mesh configuration) were fished daily and alternately on the same trawl. They demonstrated a substantial improvement in selectivity with square-mesh. Selectivity was measured using the covered codend technique, the cover being supported by circular hoops.The results were analysed taking into account the between-haul variation in selectivity. Two other important external variables were identified: the trawling depth and the codend catch, which for some species influenced between-haul variation, but there was no evidence of a coherent effect on selectivity parameters.The selectivity of 40 mm diamond-mesh codend has been reported to be rather poor because a large proportion of the codend catch is immature and smaller than the minimum landing size (MLS) or first maturity size. With the exception of the flatfish (A. laterna), the effect of a change of mesh configuration from diamond- to square-mesh on size selectivity positively affected the retention length at 50% (L₅₀). However, square-meshes were found to be unsuitable for flat and/or deep-bodied fish as these escape more readily from diamond-meshes.The Council Regulation (EC) No. 1967/2006, concerning management measures for the sustainable exploitation of fishery resources in the Mediterranean, establishes the MLS of marine organisms. However, the increase in L₅₀ with square-mesh would not avoid some of the existing contradictions in allowing the use of codend mesh which leads to lower L₅₀ than the MLS.     

Effect of expanded feed with high fish oil content on growth and fatty acid composition of rainbow trout

Rainbow trout (Oncorhynchus mykiss) were fed three different diets for 110 days — a basal dry diet with 8.4% oil content (BD8), a basal dry diet with 11.1%; oil content (BD11) a nd an expanded diet with 20.7% oil content (ED) — to investigate the influence of high fish oil exp anded diet on fatty acid composition of muscle, and to evaluate nutritional properties of edible tissue. I n fact, the experimental diets were also different in their component fatty acids, with an in creasing content of 3 highly unsaturated fatty acids (3 HUFA) from BD8 to ED. As regards biomet rics data, the condition factor and the coefficient of fatness were higher in fish fed ED in com parison with groups BD8 and BD11 (p < 0.05 ED vs. BD8). On the other hand, hepatosomatic index in group ED was markedly lower than those in groups BD8 and BD11 (p < 0.05 ED vs. BD8 and E D vs. BD11). This could be explained by the lower amount of crude protein in ED or it may indicate an excess amount of essential fatty acids (EFA) in ED. As regards fatty acid composition of fish m uscle, there were only slight differences in fatty acid composition of the edible tissue of fish wh en compared with the differences in fatty acid composition of the diets. The increased amount of fish oil in ED had a positive influence on the final weight of fish (p < 0.05 ED vs. BD8 and ED vs. BD11), but did not affect proportionately the percentage of 3 HUFA (20:53, 22:53, 22:63) and therefore the derived indices of lipid quality: so it appears possible to partially substitute fish oil in the diet with other lipid as a source of dietary fat.