The effect of Spartina alterniflora Loisel on trace metals accumulation in inter-tidal sediments

We present the distribution of Cd and Zn in sediment cores taken under Spartina alterniflora Loisel. marsh and compare with adjacent mud flats without plant cover. Vertical distribution of Cd and Zn in the mud flat and S. alterniflora cores were different. From 0 to 5 cm of depth Zn and Cd concentrations did not change with depth in the two cores but were higher in the mud flat. From 5 to 15 cm, corresponding to maximum root biomass under S. alterniflora, Zn and Cd concentrations remained constant in the mud flat cores, but increased by a factor of nearly 4 under S. alterniflora. Below this depth concentrations dropped in both cores. Manganese distribution in S. alterniflora cores suggests that oxides are precipitated at the depth of maximum root biomass. More oxic environment under S. alterniflora (average Eh = +5 mV) with low sulfide concentration (0.58 mg l^-1) relative to the mud flat cores (average Eh = –204 mV; sulfide 47.1 mg l^-1), may favor Fe and Mn oxi-hydroxides precipitation, causing an accumulation of Cd and Zn at the root zone. In the mud flat cores, Zn and Cd highest concentrations were at the sediment water interface, where oxic waters favor their precipitation with Fe and Mn oxi-hydroxides. The results discourages the indiscriminate use of salt marsh sediments in environmental monitoring of trace metals, since the possibility of post-deposition mobilization of trace metals due to root metabolism, will make correlation with trace metal loading rates impossible.     

A case-control study of risk factors for brucellosis seropositivity in Portuguese small ruminants herds

A case–control study involving 255 small ruminants herds randomly selected was carried out in Portugal between January and December 2004, to identify risk factors associated with brucellosis seropositivity.

To achieve this objective, two groups of herds selected according their prevalence status were compared: “cases” (farms with seroprevalence higher than 5%, n = 123) and “controls” (farms seronegatives, n = 132). A carefully structured questionnaire was used to collect data from each herd. A statistical analysis to compare “case” versus “control” herds was performed with the variables obtained from the questionnaire and the seroprevalence results. The effects on seroprevalence of several variables such as: individual characteristics; farm management practices; farm characteristics; animal health; knowledge and characteristics of farmers were evaluated. Data were analysed using logistic regression. Univariable analysis was used to screen the variables used in the logistic regression model. Nine variables were associated with brucellosis seropositivity in univariable analysis p < 0.10. These variables were retained for multivariable logistic regression model. Regression model identified five variables as risk factors for seropositivity. The odds of brucellosis were increased: herds with more than 116 animals (OR = 2.99); in herds with no cleaned-watering places (OR = 3.05); in herds with insufficient manure removal and insufficient cleaning of premises (OR = 2.87); in introduction of animals from non-free brucellosis herds or from herds of unknown status (OR = 12.11). In the other hand, farmers’ age (the eldest) was related to decreased odds (OR = 0.4).

Potential risk factors identified in this study were consistent factors associated with brucellosis seropositivity and support current recommendations for the control of brucellosis. Considering the paucity of epidemiological reports on brucellosis in the Northeast of Portugal and the absence of any data concerning factors related to either the prevention or the spread of the disease, our results could make a useful contribution towards the prevention of small ruminants brucellosis in the area.     

Evaluation of cassava germplasm for drought tolerance under field conditions

The development of cassava (Manihot esculenta Crantz) with a high yield under water-deficit conditions is one of the goal of the breeding programs. The objective of this study was to evaluate the performance and to select cassava accessions based on drought tolerance indices and productive potential under water stress. Forty-nine accessions were evaluated for five agronomic traits (plant height—PH, root yield—RoY, shoot yield—ShY, harvest index—HI; and dry matter content of roots—DMC) under full irrigation conditions and drought stress (DS). The accessions were selected based on: (i) high yield under drought conditions (HY-DS) and (ii) high drought tolerance (Dr-To) based on six different indices. Overall, water stress dramatically reduced the traits’ means (RoY—72.98%, ShY—54.95%, DMC—26.15%, HI—31.05%, and PH—32.95%). Low coincidence among the top ten accessions was identified based on HY-DS and Dr-To criteria. Therefore, considering only the most important traits (RoY and ShY), five accessions (BGM0815, BGM0598, 9624-09, BGM0818, and BRS Formosa) presented high HY-DS. In contrast, to Dr-To criterion, eight and nine accessions were selected for high yield of the aerial part (ShY and PH) and roots (RoY and DMC), respectively. The mean productivity, geometric mean productivity, and drought tolerance indices were the most promising to identify genotypes with high agronomic attributes, while drought susceptibility index, susceptibility, and yield stability index were suitable to identify the most drought tolerant accessions. This set of selected accessions can be used in breeding programs aimed at high yield and drought tolerance.     

Nitrogen efficiency in hydroponic chicory

An experiment was conducted to develop a model of vegetative growth based on the nitrate concentrations in nutrient solutions using the nutrient film technique and to determine the best cultivar for each concentration. The chicory cultivars (“Pão de Açúcar,” “Folha Larga,” “Precoce de Trieste” and “Catalonha”) and the subplots corresponded to different nitrate concentrations (6.68, 10.0, 13.32 and 16.64 mmol L^?1). There was an interaction between the evaluated factors, such that there was no similarity in the response of the chicory cultivars to the N concentrations in the nutrient solution. The most productive chicory cultivar was “Pão de Açúcar,” which exhibited 10.5% higher productivity than the average, and the least productive was “Folha Larga,” which showed approximately 8.5% lower productivity than the average.     

Comparing GLM,GLMM, and GEE modeling approaches for catch rates of bycatch species: A case study of blue shark fisheries in the South Atlantic

Modeling and understanding the catch rate dynamics of marine species is extremely important for fisheries management and conservation. For oceanic highly migratory species in particular, usually only fishery‐dependent data are available which have limitations in the assumption of independence and if often zero‐inflated and/or overdispersed. We tested different modeling approaches applied to the case study of blue shark in the South Atlantic, by using generalized linear models (GLMs), generalized linear mixed models (GLMMs), and generalized estimating equations (GEEs), as well as different error distributions to deal with the presence of zeros in the data. We used fractional polynomials to deal with non‐linearity in some of the explanatory variables. Operational (set level) data collected by onboard fishery observers, covering 762 longline sets (1,014,527 hooks) over a 9‐year period (2008–2016), were used. One of the most important variables affecting catch rates is leader material, with increasing catches when wire leaders are used. Spatial and seasonal variables are also important, with higher catch rates expected toward temperate southern waters and eastern longitudes, particularly between July and September. Environmental variables, especially SST, also affect catches. There were no major differences in the parameters estimated with GLMs, GLMMs, or GEEs; however, the use of GLMMs or GEEs should be more appropriate due to fishery dependence in the data. Comparing those two approaches, GLMMs seem to perform better in terms of goodness‐of‐fit and model validation.     

Filling the gaps in the Argentinian distribution of orthohantavirus: First finding of Lechiguanas virus in rodents from Corrientes,Argentina

Hantavirus Pulmonary Syndrome (HPS) is an emerging infectious disease caused by orthohantaviruses in the Americas. In Argentina, since 1995, several reservoirs and virus variants have been described, but the northeastern and central endemic zones in the country include an area without human or rodent infections, despite sharing rodent species with areas with that disease. The aim of this study was to search for orthohantavirus in rodent communities that inhabit this area, which borders two endemic areas of HPS. Small rodents were captured in June of 2022 through a total effort of 644 trap nights distributed in five grids located in the Iberá National Park, Corrientes, Northeastern Argentina. All rodents were sexed, weighed, and the species was recorded. Blood samples were extracted to detect ANDV-specific immunoglobulin G (IgG), and to extract the RNA virus. Trimmed sequences were mapped against reference sequences from GenBank. We captured a total of 36 Oligoryzomys flavescens and 15 Oxymycterus rufus. We detected the O. flavescens species infected with Lechiguanas orthohantavirus in the camping area of the National Park. A nucleotide comparison with previously published sequences shows a 98.34% similarity to the virus obtained from a human case of HPS reported in the adjacent Misiones province. This study demonstrated, for the first time, that O. flavescens is a host of the Lechiguanas orthohantavirus in this zone and contributes to closing information gaps on the distribution of orthohantavirus in Argentina. Additionally, the high similarity with the hantavirus found in the human case of Misiones suggests that the reservoir in that province would also be O. flavescens (not previously confirmed). This information permits us to focus on the preventive measurements to protect the human population.     

Correlations between the biochemistry and mechanical states of a sea-urchin ligament: a mutable collagenous structure

Mutable collagenous tissues (MCTs) of echinoderms can be regarded as intelligent and dynamic biomaterials, due to their ability to reversibly change their mechanical properties in a short physiological time span. This mutability phenomenon is nervously mediated and involves secreted factors of the specialized 'juxtaligamental' cells, which, when released into the extracellular matrix (ECM), change the cohesive forces between collagen fibrils. MCTs exist in nature in several forms, including some associated with echinoderm autotomy mechanisms. Since the molecular mechanism of mutability is still incompletely understood, the aim of this work was to provide a detailed biochemical analysis of a typical mutable collagenous structure and to identify possible correlations between its biochemistry and mechanical states. A better understanding of the mutability phenomena is likely to provide a unique opportunity to develop new concepts that can be applied in the design of dynamic biomaterial for tissue regeneration, leading to new strategies in regenerative medicine. The MCT model used was the compass depressor ligament (CDL) of a sea urchin (Paracentrotus lividus), which was analyzed in different mechanical states, mimicking the mutability phenomenon. Spectroscopic techniques, namely Fourier transform infrared (FT-IR) and confocal Raman microscopy, were used to identify the specific molecular components that contribute to the CDL biochemical microenvironment and to investigate the possibility that remodelling/synthesis of new ECM components occurs during the mutability phenomenon by analogy with events during pregnancy in the uterine cervix of mammals (which also consists mainly of mechanically adaptable connective tissues). The results demonstrate that CDL ECM includes collagen with biochemical similarities to mammalian type I collagen, as well as sulphated glycosaminoglycans (GAGs). CDL mutability seems to involve a molecular rearrangement of the ECM, without synthesis of new ECM components. Although there were no significant biochemical differences between CDLs in the various mechanical states were observed. However, subtle adjustments in tissue hydration seemed to occur, particularly during stiffening.