Biphasic effect of falcarinol on caco-2 cell proliferation, DNA damage, and apoptosis

The polyacetylene falcarinol, isolated from carrots, has been shown to be protective against chemically induced colon cancer development in rats, but the mechanisms are not fully understood. In this study CaCo-2 cells were exposed to falcarinol (0.5-100 microM) and the effects on proliferation, DNA damage, and apoptosis investigated. Low-dose falcarinol exposure (0.5-10 microM) decreased expression of the apoptosis indicator caspase-3 concomitantly with decreased basal DNA strand breakage. Cell proliferation was increased (1-10 microM), whereas cellular attachment was unaffected by <10 microM falcarinol. At concentrations above 20 microM falcarinol, proliferation of CaCo-2 cells decreased and the number of cells expressing active caspase-3 increased simultaneously with increased cell detachment. Furthermore, DNA single-strand breakage was significantly increased at concentrations above 10 microM falcarinol. Thus, the effects of falcarinol on CaCo-2 cells appear to be biphasic, inducing pro-proliferative and apoptotic characteristics at low and high concentrations of falcarinol, respectively.     

Modeling vertical movement of organic matter in a soil incubated for 41 years with C labeled straw

The distribution of organic matter (OM) in the soil profile reflects the balance between inputs and decomposition at different depths as well as transport of OM within the profile. In this study we modeled movement of OM in the soil profile as a result of mechanisms resulting in dispersive and advective movement. The model was used to interpret the distribution of ¹⁴C in the soil profile 41 years after the labeling event. The model fitted the observed distribution of ¹⁴C well (R²=0.988, AIC_c=−82.6), with a dispersion constant of D=0.71 cm² yr⁻¹ and an advection constant of v=0.0081 cm yr⁻¹. However, the model consistently underestimated the amount of OM in the soil layers from 27 to 37 cm depth. A possible explanation for this is that different fractions of OM are transported by different mechanisms. For example, particulate OM, organomineral colloids and dissolved OM are not likely to be transported by the same mechanisms. A model with two OM fractions, one moving exclusively by dispersive processes (D=0.26 cm² yr⁻¹) and another moving by both dispersive (D=0.99 cm² yr⁻¹) and advective (v=0.23 cm yr⁻¹) processes provided a slightly better fit to the data (R²=0.995, AIC_c=−83.6). More importantly, however, this model did not show the consistent underestimation from 27 to 37 cm soil depth. This corroborates the assumption that differing movement mechanisms for different OM fractions are responsible for the observed distribution of ¹⁴C in the profile. However, varying dispersion, advection, and decay of OM with depth are also possible explanations.     

Starved bacteria retain their size but lose culturability - Lessons from a 5000 years old undisturbed A-horizon

The vast majority of soil bacteria are unable to form visible colonies on agar media. One hypothesis is that unculturable soil bacteria are dwarf cells that may either be small starved forms derived from larger species or represent inherently small species. We test the hypotheses that cells of extremely starved soil bacterial communities are smaller and less culturable than cells of bacterial communities from a richer soil, and that culturability is related to cell size by comparing an extremely starved community from a 5200-year-old A-horizon buried under a burial mound with a community from a modern agricultural A-horizon.We serially filtered cell suspensions through filters with successively smaller pore sizes (0.8 μm, 0.6 μm and 0.4 μm) and assessed total cell number and culturability, i.e. the ability to form colonies on two types of agar media, in each size fraction. Cell size distributions were assessed in unfiltered suspensions. Average cell size was only moderately reduced in the starved community, where culturability was low for all size classes. In contrast, culturability was much higher in the modern community, where culturability decreased dramatically with decreasing cell sizes.     

Monitoring chemical changes of dry-cured Parma ham during processing by surface autofluorescence spectroscopy

Parma hams at various processing stages were investigated by surface autofluorescence spectroscopy. Fluorescence "landscapes" of raw meat and salted (3 months), matured (11 and 12 months), and aged (15 and 18 months) Parma hams were obtained, and a three-dimensional data array (sample x emission x excitation) was used to develop a PARAFAC model including five components, which all exhibited characteristics of pure fluorophores regarding both excitation and emission spectra. The relative amount of each component related strongly to the processing stage, and sample age showed good correlation to fluorescence data (R = 0.98), with a relative error of prediction of approximately 1 month. Fluorescence measurements from samples of either semimembranosus or biceps femoris were used to predict chemical or sensory reference data, yielding good correlation for biceps femoris data, thereby enabling moisture content, sensory and instrumental color, and proteolysis value to be fairly well predicted. Overall, surface autofluorescence of Parma hams proved to hold relevant information, relating to major chemical/physical changes during processing. It is concluded that fluorescence spectroscopy has potential as an innovative method of quality control in dry-cured ham.     

Carbon cycling in subarctic tundra; seasonal variation in ecosystem partitioning based on in situ C pulse-labelling

Carbon assimilation and allocation were studied in a tundra ecosystem in northern Scandinavia. Seasonal variation in the below-ground carbon allocation to dissolved organic carbon (DOC), coarse-, fine-, and hair roots was investigated using in situ ¹⁴C pulse-labelling, adding 2-3 MBq ¹⁴CO₂ dm⁻² to the above-ground vegetation. Combining the allocation data with regression models of the seasonal carbon flux made it possible to estimate a temporally explicit ecosystem carbon allocation budget.The ecosystem was a net source of CO₂, losing on average 0.97 g C m⁻² d⁻¹ to the atmosphere, with little variation through the season. There was, however, significant temporal variation in partitioning of recently assimilated carbon. Allocation to below-ground compartments over 32 days following labelling increased from 18% in June to 55% in September. Above-ground allocation showed the opposite trend. Hair roots and DOC were strong sinks in the autumn. Transport of newly assimilated carbon occurred rapidly throughout the season, ¹⁴C appearing in all sampled pools within 4 h of labelling.The seasonal variation in carbon partitioning observed in this study has implications for the residence time of assimilated carbon in the ecosystem. A relatively greater allocation to rapidly decomposing pools, such as hair roots and DOC, would tend to reduce incorporation into woody tissue, increasing the overall rate of carbon cycling and decreasing ecosystem storage. The results of this study will be of value for building and validating mechanistic models of ecosystem carbon flow in tundra and subarctic ecosystems.     

Changes in carbon stocks of Danish agricultural mineral soils between 1986 and 2009

To establish a national inventory of soil organic carbon (SOC) stocks and their change over time, soil was sampled in 1986, 1997 and 2009 in a Danish nation‐wide 7‐km grid and analysed for SOC content. The average SOC stock in 0–100‐cm depth soil was 142 t C ha^?1, with 63, 41 and 38 t C ha^?1 in the 0–25, 25–50 and 50–100 cm depths, respectively. Changes at 0–25 cm were small. During 1986–97, SOC in the 25–50‐cm layer increased in sandy soils while SOC decreased in loam soils. In the subsequent period (1997–2009), most soils showed significant losses of SOC. From 1986 to 2009, SOC at 0–100 cm decreased in loam soils and tended to increase in sandy soils. This trend is ascribed to dairy farms with grass leys being abundant on sandy soils while cereal cropping dominates on loamy soils. A statistical model including soil type, land use and management was applied separately to 0–25, 25–50 and 50–100 cm depths to pinpoint drivers for SOC change. In the 0–25 cm layer, grass leys added 0.95 t C ha^?1 year^?1 and autumn‐sown crops with straw incorporation added 0.40 t C ha^?1 year^?1. Cattle manure added 0.21 t C ha^?1 year^?1. Most interestingly, grass leys contributed 0.58 t C ha^?1 year^?1 at 25–50 cm, confirming that inventories based only on top‐soils are incomplete. We found no significant effects in 50–100 cm. Our study indicates a small annual loss of 0.2 t C ha^?1 from the 0–100 cm soil layer between 1986 and 2009.     

Long-term study of growth in the New Zealand flatworm Arthurdendyus triangulatus under laboratory conditions

In a 1-year laboratory study of the New Zealand flatworm Arthurdendyus triangulatus, individual growth, degrowth and regrowth were manipulated via the feeding regime, with the compost worm Eisenia fetida as prey. A mean growth rate of 25 mg live weight wk^—1 was evident, individual rates ranging between 18 and 38 mg wk⁻¹. Degrowth was associated with egg capsule deposition for which the maximum rate was 0.5 capsules wk⁻¹. The more egg capsules produced, the greater the adult weight loss, degrowth rates ranging from 8 to 55 mg wk⁻¹. Change in flatworm body weight (gain/loss) also correlated with the length of the food introduction interval, though weight could be maintained for circa 2 weeks. Weight loss was not simply a function of hunger, voluntary cessation of feeding (possibly related to egg capsule production) being a confounding factor. During the growth phase, individual predation rate ranged from 0.9 to 1.1 earthworms wk⁻¹, rate of tissue consumption ranging from 346 to 485 mg wk⁻¹. Conversion efficiencies of earthworm to flatworm tissue were estimated to range between 3.8% and 10.7%. The impact of this exotic planarian on earthworm populations is discussed.     

Volatilisation of aromatic hydrocarbons from soil: Part II,Fluxes from coal tar contaminated soils residing below the soil surface

The non-steady-state fluxes of aromatic hydrocarbons from coal tar contaminated soil, placed below a 5 cm deep layer of uncontaminated soil, were measured in the laboratory over a period of 53 days. The contaminated soil originated from a former gasworks site and contained concentrations of 11 selected aromatic hydrocarbons between 50 to 840 µg/cm³. Where the microbial activity was inhibited, the fluxes stabilized on a semi-steady-state level for the monocyclic aromatic hydrocarbons, naphthalene and 1-methylnaphthalene after a period of 10–20 days. Fluxes of acenaphthene and fluorene were only measurable in an experiment that utilized a cover soil with a low organic content. The fluxes were predicted by a numerical model assuming that the compounds acted independently of each other and that local equilibrium between the air, water, and sorbed phases existed. The model overestimated the fluxes for all the detected aromatic hydrocarbons by a factor of 1.3 to 12. When the cover soil was adapted to degrade naphthalene, the fluxes of naphthalene and 1-methylnaphthalene approached the detection limit after 5 to 8 days. Thereafter the fluxes of these two compounds were less than predicted by the model employing half-life values of 0.5 and 1 day for naphthalene and 1-methylnaphthalene respectively.