Associations between antimicrobial use and the prevalence of antimicrobial resistance in fecal Escherichia coli from feedlot cattle in western Canada

A randomized, controlled, blinded clinical trial was performed at a research feedlot in western Canada. Auction-market-derived steers (n = 288) were randomly assigned to 1 of 3 treatments: 1) no antimicrobials on arrival; 2) oxytetracycline in the starter ration for 14 d; and 3) long-acting oxytetracycline subcutaneously on day 0. Minimal inhibitory concentrations of 7 antimicrobials were determined for 3 generic fecal E. coli isolates per animal on arrival and throughout the feeding period. There was a low prevalence of antimicrobial resistance in generic E. coli isolates from calves on arrival. There were increased proportions of cattle with resistant E. coli isolates early in the feeding period among calves in groups 2 and 3. Individual animal treatments were not associated with increased proportions of cattle with resistant E. coli isolates preslaughter. There was no difference in the proportion of animals with E. coli isolates resistant to tetracycline between the treatment groups preslaughter. However, there were significantly more animals with tetracycline resistant isolates of E. coli preslaughter than at arrival.     

Case-control study investigating an anthrax outbreak in Saskatchewan, Canada--Summer 2006

In 2006, an outbreak of anthrax in Saskatchewan affected several species but most of the losses occurred in cattle. Potential risk factors contributing to this outbreak were investigated through questionnaires involving 117 case farms and 259 control farms geographically representative of the Saskatchewan beef herd. The occurrence of flooding [odds ratio (OR) = 3.4; 95% confidence interval (CI): 1.8 to 6.4], wetter pastures (Good: OR = 3.5; 95% CI: 1.4 to 8.5; Wet: OR = 7.2; 95% CI: 2.9 to 18.1), shorter pasture grass length (OR = 3.0; 95% CI: 1.4 to 6.4), and higher density of the animals on pasture (OR = 3.0; 95% CI: 1.6 to 5.7) were more likely to have been reported for case herds than for control herds. Case farms were more likely than control farms to have vaccinated more than 1 week after the first reported case in the rural municipality (OR = 6.3; 95% CI: 2.6 to 15.3). Timing of vaccination in case herds was also significantly associated with the occurrence of subsequent deaths on these farms (P = 0.001).     

Gross postmortem and histologic examination findings from abortion losses and calf mortalities in western Canadian beef herds

Production losses from abortions, stillbirths, and early calf mortality were described for the 2002 calf crop in 203 beef herds in western Canada. A total of 1689 calves were examined. A summary diagnosis was reported for 64% of aborted calves, 78% of stillborn calves, 88% of neonatal calves, and 94% of the calves > 3 d of age. Diagnoses for aborted calves included: thyroid gland lesions, pneumonia, developmental anomalies, placentitis, and myocardial necrosis or myopathy. For stillborn calves, diagnostic findings included: dystocia, thyroid gland lesions, myocardial necrosis or myopathy, developmental anomalies, and skeletal myopathy or necrosis. The most common diagnoses for neonatal calves (≤ 3 d) were: pneumonia, skeletal myopathy or necrosis, myocardial necrosis or myopathy, accident or trauma, and septicemia. For older calves (3 d to 3 mo), the most common diagnoses included: starvation, abomasal ulcer or perforation, enteritis or colitis, pneumonia, and intestinal volvulus, obstruction, or perforation.     

Fetal and adult hematopoietic stem cells give rise to distinct T cell lineages in humans

Although the mammalian immune system is generally thought to develop in a linear fashion, findings in avian and murine species argue instead for the developmentally ordered appearance (or "layering") of distinct hematopoietic stem cells (HSCs) that give rise to distinct lymphocyte lineages at different stages of development. Here we provide evidence of an analogous layered immune system in humans. Our results suggest that fetal and adult T cells are distinct populations that arise from different populations of HSCs that are present at different stages of development. We also provide evidence that the fetal T cell lineage is biased toward immune tolerance. These observations offer a mechanistic explanation for the tolerogenic properties of the developing fetus and for variable degrees of immune responsiveness at birth.     

Comparison of first-opinion and second-opinion histopathology from dogs and cats with cancer: 430 cases (2001–2008)

Second-opinion histopathology is intended to detect clinically significant discrepancies that have a direct impact on patient care. We sought to determine if this practice at our institution affected patient management and prognosis. First- and second-opinion histopathology reports from cases were retrospectively reviewed. Reports were considered to be in diagnostic agreement, partial diagnostic disagreement or complete diagnostic disagreement. Four hundred and thirty cases were studied. In 70% of cases there was a diagnostic agreement. In 20% of cases, there was partial diagnostic disagreement, where diagnoses were the same but information such as grade or lymphatic and/or vascular invasion was changed. In 10% of cases, complete diagnostic disagreement resulted from a change in degree of malignancy (malignant to benign, or converse; 7%) or a change in cell type (3%). In 17% of the cases evaluated, the histopathology review prompted a change in treatment or prognosis. These findings support the use of second-opinion histopathology as an important part of patient care.     

Comparative efficiency and accuracy of variable area transects versus square plots for sampling tree diversity and density

Agroforestry systems have been recognized as areas with high conservation potential, and there is a need to quickly assess the biodiversity and tree stocking density available in these systems. However, it is not clear if the commonly used fixed area plot is most efficient for sampling such landscapes, or if a different method could provide equivalent data with less effort. Thus, a field and simulation-based study was carried out to compare the efficiency and accuracy of a variable area transect versus the fixed area square plot. Field efficiency tests were carried out in three habitat types, robusta coffee plantations, arabica coffee plantations and a privately owned forest fragment, in Kodagu, southern India. A simulation study of bias, precision and accuracy of the two methods for tree density estimation also was carried out using various spatial distribution patterns and densities. The variable area transect was significantly more efficient per unit effort in the field than the fixed area square plot. In the simulation tests both methods performed equally well under random spatial distribution. However, under simulated aggregated distribution both methods were positively biased (square plot up to 12% at low density, variable area transect 9–12% at all densities), and under simulated regular distribution the variable area transect was slightly negatively biased (−5 to −7% at medium to high density). The variable area transect thus can be recommended over the square plot for rapid assessment of tree diversity and density, when the vegetation is expected to be randomly dispersed.     

Evaluating functional connectivity with matrix behavior uncertainty for an endangered butterfly

Understanding animal responses to landscape elements helps forecast population reactions to changing landscape conditions. The challenge is that some behaviors are poorly known and difficult to estimate. We assessed how uncertainty in behavioral responses to dense woods, an avoided landscape structure, impacts functional connectivity among reproductive habitat patches for Fender’s blue butterfly, an endangered prairie species of western Oregon, USA. We designed a factorial simulation experiment using a spatially explicit individual-based model to project functional connectivity for female butterflies across current and alternative landscapes. We varied the probability of dense woods entry and turning angle standard deviation for movements within the dense woods over a range of biologically reasonable and observed values. Butterflies in the current landscape (46 % dense woods) and one with prairie encroached by forest (60 % dense woods) showed reductions in functional connectivity estimates consistent with the expectations of habitat fragmentation. Although dense woods entrance uncertainty impacted functional connectivity projections, uncertainty in the dense woods turning angle standard deviation had comparatively little impact on connectivity estimates. Reduction and reconfiguration of the current dense woods to 27 % cover (restored landscape) appeared to facilitate a corridor behavior in dispersing individuals, likely providing a functional connectivity estimate comparable to the historic landscape (<5 % dense woods). Our simulations suggest that additional study of butterfly movement within the dense woods is unnecessary and that a partial reduction in dense woods would be sufficient to achieve historic levels of functional connectivity for Fender’s blue across the study landscape.     

Aflatoxin levels in foodstuffs in Fiji and Tonga islands

Fungal growth is a major problem of food storage in humid environments, as occur in South Pacific countries for parts of the year. Major crops, including edible nuts, copra and root crops, are susceptible toAspergillus growth and therefore potential contamination with aflatoxin. Liver cancer occurs in Fiji and Tonga, with the occurrence in Fijians being significantly higher than in the Indian population.Thirty-three peanut samples from farmers were analysed for aflatoxin and 50% of the samples from Fiji were positive but only 9% from Tonga, reflecting different storage practices. Local copra, cassava, and maize samples were found contaminated, with only the maize at a serious level. Twenty-five plate food samples from Fiji showed low contamination. When starch foods from the Fijian diet left after cooking were analysed to follow potential aflatoxin development only sweet potatoes showed some contamination.