Biological and molecular characterization of two closely related carlaviruses affecting brassica plants

Carlaviruses are plant-infecting viruses with flexuous filamentous particles of approximately 650 nm in length and a positive single-stranded hexacistronic RNA molecule as the genome. In this study, we analysed 14 samples of brassicas plants, reportedly affected by carlaviruses, that were collected in distant and edaphoclimatic distinct regions in Brazil. The genomes of four viral isolates detected in leaf kale (Brassica oleracea var. acephala) plants displayed the typical genomic organization of carlaviruses, subdivided into two contrasting identity profiles. Isolates T25, T107, and T110 showed a higher sequence identity among them (c.93%) than with T90 (c.67%), which had the highest nucleotide sequence identity (85.2%) with the only documented genomic fragment, approximately 1 kb of the RNA 3′-end, of cole latent virus (CoLV). Identity values among the other three isolates and CoLV were consistently lower than 78.6%. Nucleotide and amino acid sequence identity values of the replicase cistron of the isolates T25 and T90 are below the threshold for species demarcation in the genus Carlavirus. Upon mechanical transmission, these two isolates induced different symptoms in brassicas and solanaceous plants. Overall, data indicated that these viruses belong to two related but distinct species of carlaviruses. While T90 was recognized as an isolate of CoLV, the remaining isolates were considered members of a new tentative carlavirus named Cole mild mosaic virus (CoMMV). Current work provides convincing support for the taxonomic status of the species Cole latent virus, enlarges the known diversity of carlaviruses, and makes available new molecular tools to improve surveys of brassica-infecting viruses.     

Pathogenesis and transmissibility of highly (H7N1) and low (H7N9) pathogenic avian influenza virus infection in red-legged partridge (Alectoris rufa)

ABSTRACT: An experimental infection with highly pathogenic avian influenza virus (HPAIV) and low pathogenic avian influenza virus (LPAIV) was carried out in red-legged partridges (Alectoris rufa) in order to study clinical signs, gross and microscopic lesions, and viral distribution in tissues and viral shedding. Birds were infected with a HPAIV subtype H7N1 (A/Chicken/Italy/5093/1999) and a LPAIV subtype H7N9 (A/Anas crecca/Spain/1460/2008). Uninoculated birds were included as contacts in both groups. In HPAIV infected birds, the first clinical signs were observed at 3 dpi, and mortality started at 4 dpi, reaching 100% at 8 dpi. The presence of viral antigen in tissues and viral shedding were confirmed by immunohistochemistry and quantitative real time RT-PCR (qRRT-PCR), respectively, in all birds infected with HPAIV. However, neither clinical signs nor histopathological findings were observed in LPAIV infected partridges. In addition, only short-term viral shedding together with seroconversion was detected in some LPAIV inoculated animals. The present study demonstrates that the red-legged partridge is highly susceptible to the H7N1 HPAIV strain, causing severe disease, mortality and abundant viral shedding and thus contributing to the spread of a potential local outbreak of this virus. In contrast, our results concerning H7N9 LPAIV suggest that the red-legged partridge is not a reservoir species for this virus.     

Growth and wood density of Pinus taeda L. as affected by shelterwood harvest in a two-aged stand in Southern Brazil

Pine plantations are an important wood source in Brazil, with Pinus taeda being most frequently planted. Most pinewood is directed to the paper and pulp industry, but there is an increasing demand for wood for solid end-uses, requiring large stems from longer rotations which can be obtained using P. taeda as the canopy in two-aged stands. We evaluated radial growth and wood density at different stem heights of P. taeda in the highlands of Southern Brazil over a production period of 36 years and subjected to shelterwood harvest. Cross-sectional disks were obtained from 15 trees in different stem heights; 10 were used for growth analyses and 5 for growth and density analyses. We used disk images and X-ray techniques for growth and density analyses, respectively. Samples were analyzed for ring (width and density), earlywood, and latewood (width, density, and proportion). Ring width varied between 0.4 and 1.7 cm, with the widest rings in the first years (3–5 years.) of growth. Ring density increased with age, with higher densities on the lower stem portions. Mature wood started to be formed from the 16th ring onwards. Shelterwood harvest affected both ring width and density, but the effects on ring width lasted for at least 5 years, while the effects on wood density were short-lasting. Mature P. taeda trees increased their size after the shelterwood harvest without compromising their wood density. Longer production periods of P. taeda as retained trees in the canopy of two-aged stands provide high-quality wood for structural purposes.

     

Photoprotective Bioactivity Present in a Unique Marine Bacteria Collection from Portuguese Deep Sea Hydrothermal Vents

Interesting biological activities have been found for numerous marine compounds. In fact, screening of phylogenetically diverse marine microorganisms from extreme environments revealed to be a rational approach for the discovery of novel molecules with relevant bioactivities for industries such as pharmaceutical and cosmeceutical. Nevertheless, marine sources deliverables are still far from the expectations and new extreme sources of microbes should be explored. In this work, a marine prokaryotic collection from four Mid-Atlantic Ridge (MAR) deep sea hydrothermal vents near the Azores Islands, Portugal, was created, characterized and tested for its photoprotective capacity. Within 246 isolates, a polyphasic approach, using chemotaxonomic and molecular typing methods, identified 23-related clusters of phenetically similar isolates with high indexes of diversity. Interestingly, 16S rRNA gene sequencing suggested the presence of 43% new prokaryotic species. A sub-set of 139 isolates of the prokaryotic collection was selected for biotechnological exploitation with 484 bacterial extracts prepared in a sustainable upscalling manner. 22% of the extracts showed an industrially relevant photoprotective activity, with two extracts, belonging to new strains of the species Shewanella algae and Vibrio fluvialis, uniquely showing UV-A, UV-B and UV-C protective capacity. This clearly demonstrates the high potential of the bacteria MAR vents collection in natural product synthesis with market applications.     

Infection of cattle in Queensland with bluetongue viruses: 1. prevalence of antibodies

SUMMARY A survey of nearly 20 000 cattle in Queensland was conducted to describe the prevalence and distribution of infection by serotypes of bluetongue virus. The overall prevalence of serum antibodies to one or more bluetongue viruses was 8.7% (95% confidence interval 8.3 to 9.1). Sera from cattle contained neutralising activity against 2 serotypes, 1 and 21. No evidence was found of infection with other serotypes previously isolated in Australia. The overall prevalence of serotype 1 antibodies was 7.7% (95% CI 7.3 to 8.0) and the prevalence of serotype 21 antibodies was 3.3% (95% CI 3.1 to 3.6). The prevalence of serotype 1 antibodies was significantly (P < 0.05) higher than that of serotype 21 in every region of the State, except in the central highlands and south-west Queensland. Overall, 3 significantly (P < 0.05) different zones of prevalence were found: high prevalence (> 20%) in far north Queensland, moderate (5 to 20%) in north-west, northern and southern coastal Queensland, and low (< 5%) in the central highlands, Darling Downs and south-west Queensland.     

Two amides from Piper tuberculatum fruits

The fruits of Piper tuberculatum yielded pellitorine, N-isobutyl-2E,4E-decadienamide (1), and piperidide-2E,4E-decadienamide (2). Their complete NMR analysis, based on one- and two-dimensional experiments, is reported.     

Responses to water stress in two Eucalyptus globulus clones differing in drought tolerance

We evaluated drought resistance mechanisms in a drought-tolerant clone (CN5) and a drought-sensitive clone (ST51) of Eucalyptus globulus Labill. based on the responses to drought of some physiological, biophysical and morphological characteristics of container-grown plants, with particular emphasis on root growth and hydraulic properties. Water loss in excess of that supplied to the containers led to a general decrease in growth and significant reductions in leaf area ratio, specific leaf area and leaf-to-root area ratio. Root hydraulic conductance and leaf-specific hydraulic conductance decreased as water stress became more severe. During the experiment, the drought-resistant CN5 clone maintained higher leaf water status (higher predawn and midday leaf water potentials), sustained a higher growth rate (new leaf area expansion and root growth) and displayed greater carbon allocation to the root system and lower leaf-to-root area ratio than the drought-sensitive ST51 clone. Clone CN5 possessed higher stomatal conductances at moderate stress as well as higher hydraulic conductances than Clone ST51. Differences in the response to drought in root biomass, coupled with changes in hydraulic properties, accounted for the clonal differences in drought tolerance, allowing Clone CN5 to balance transpiration and water absorption during drought treatment and thereby prolong the period of active carbon assimilation.     

Use of exchangeable and nonexchangeable forms of calcium,magnesium, and potassium in soils without fertilization after successive cultivations with Pinus taeda in southern Brazil

Purpose

The aim of this study was to quantify the contents and stocks of exchangeable and nonexchangeable fractions of potassium (K), calcium (Ca), and magnesium (Mg) after one and three successive Pinus taeda crops without fertilization and to predict the soil supply for further cultivations.

Materials and methods

The soil was analyzed in layers up to 80 cm in two Pinus forests, one at the end of the first cultivation and other at the end of the third successive crop, in a subtropical region in southern Brazil. Stocks of exchangeable and semi-total fractions of K, Ca, and Mg in the soil were calculated, and the potential number of crop rotations of Pinus without fertilization was estimated.

Results and discussion

After three Pinus crops, there was an average reduction of 46.9, 90.8, and 45.5% of exchangeable K, Ca, and Mg fractions respectively. Semi-total Ca content reduced in all depths, and semi-total K contents, in turn, only decreased until 20 cm of depth. The semi-total Mg contents have not been modified over the cultivations. Considering crop management with the export of plant twigs and needles and relying just on the availability of exchangeable Ca, the stocks of these nutrients in the soil would be sufficient for only one more Pinus cultivation, even when considering the absorption of nutrients on an 80-cm soil depth profile.

Conclusions

The management adopted in the region must be modified, replacing the nutrients exported via harvesting, especially Ca. Thus, the establishment of new cultivation of Pinus without fertilization may have its yield impaired, especially by the Ca availability.

     

Effect of liming on hexazinone sorption and desorption behavior in various soils

Liming is a practice commonly used to modify soil acidity, neutralize aluminum, and increase calcium and magnesium in the soil. Liming can change herbicide retention processes and consequently weed control and potential environmental contamination. The effects of liming on the sorption and desorption of hexazinone in different soils were evaluated. Samples from seven Brazilian soils were collected and separated into two subsamples, with and without limestone incubation. Hexazinone was quantified using ultra high-performance liquid chromatography. The sorption and desorption coefficients were determined in soils using Freundlich isotherms. Increasing the pH did not alter the sorption kinetics of hexazinone in the same soil class. The shortest sorption time of hexazinone occurred in soils with higher organic matter (OM) and clay content. Liming reduced the sorption and increased the desorption of hexazinone in the soils, which was caused by the increase in pH and reduction of OM content. Although the application of limestone increased desorption, the rate at which this process occurred was less than the sorption rate of hexazinone in most cases. In alkaline soils, the recommended dose of hexazinone for pre-emergence application should be low to avoid leaching and reduce the contamination of groundwater resources.