SnakeMap: four years of experience with a national small animal snake envenomation registry

SnakeMap is a national cloud-based, veterinary snakebite registry. It was designed to prospectively collect data of the clinical circumstances and temporospatial information on cases of snake envenomation in dogs and cats. We herein introduce the project and summarise the data from the first 4 years of SnakeMap. The registry is a veterinary community-based online database allowing case entry from veterinary hospitals across Australia. Registry data comprise hospital characteristics, patient characteristics, envenoming snake type, treatment and outcome variables, including time and geolocation of the snake bite. We present summative information on select key variables from the SnakeMap registry (1 July 2015 to 30 June 2019). Twenty-eight hospitals from 6 states/territories entered 624 cases into the registry, including 419 dogs (67%) and 205 cats (33%). Bite time was available in 216 animals of which 90 (42%) were reported to be bitten in the 3 hours between 03:00 pm and 05:59 pm; median bite to presentation interval was 60 (interquartile range [IQR] 30, 211) minutes in dogs and 95 (IQR 41, 238) minutes in cats. Bites occurred in the owner's yard in 356 dogs (85%) and 53 cats (26%). A snake venom detection kit was used in 172 cases (28%) and antivenom was administered in 523 cases (85%). Most animals (n = 534, 88%) survived to discharge (median hospitalisation of 25 [IQR 16, 62] hours). SnakeMap effectively collects relevant clinical data from dogs and cats with presumed snake bite and provides locally specific information on the epidemiology of snake envenomation in small animals.     

Use of crop models to understand genotype by environment interactions for drought in real-world and simulated plant breeding trials

Crop simulation models of plant processes capture the biological interactions between the sensing of signals at an organ level (e.g. drought affecting roots), the response of the plant at a biochemical level (e.g. change in development rate) and the result at the organ (or crop) level (e.g. reduced growth). In dissecting the complex control of phenotypes like yield, simulation models have several roles. Models have been used to generate an index of the climatic environment (e.g. of drought stress) for breeding programme trials. In wheat and sorghum grown in northern Australia, this has shown that mid-season drought generates large genotype by environment interaction. By defining gene action to calculate the value of input trait parameters to crop models, simulated multi-environment trials estimate the yield of ‘synthetic’ sorghum cultivars grown in historical or artificial climates with current or potential management regimes. In this way, the biological interactions among traits constrain the crop yields to only those that are biologically possible in the given set of environments. This allows the construction of datasets that are more ‘realistic’ representations of gene by trait by environment interaction than is possible using only the statistical attributes (e.g. means, variances and correlations) of real-world trait datasets. This approach has an additional advantage in that ‘biological and experimental noise’ can be manipulated separately. These ‘testbeds’ for statistical techniques can be extended to the interpretation of a crossing and selection programme where the processes of chromosomal recombination are simulated using a quantitative genetics model and applied to the trait parameters. Statisticians are challenged to develop improved methods for the resulting simulated phenotype datasets, with the objective of revealing the (known) underlying genetic and environment structure that was input to the simulations. These improved methods can then be applied to existing plant breeding programmes.     

Pasture and forage crop systems for non-irrigated dairy farms in southern Australia. 1. Physical production and economic performance

The dairy industry in southern Australia relies on perennial ryegrass pasture to supply 60–70% of the diet of lactating cows. Improvements in the amount and quality of home-grown forage used for dairy cow feeding are critical for further productivity gains in the industry. A modeling approach was used to estimate the effects of changing the forage system on farm business profit. Base models (using 100% of farm area in perennial ryegrass pasture) were constructed for above-average (Top 40%) and high performing (Top 10%) farm types typical of two locations: Terang in southwest Victoria and Ellinbank in Gippsland, eastern Victoria. These models were then re-simulated using different forage base options such as: oversowing annual ryegrass, winter crops (annual ryegrass monoculture, winter cereal grown for whole crop silage), summer crops (grazing brassicas, maize), combinations of these (double cropping), or summer shoulder pasture (notionally based on tall fescue) on between 10% and 100% of farm area.     

Biochemical analysis of normal articular cartilage in horses

Articular cartilage specimens from the distal articular surface of 32 radiocarpal bones from 24 2- to 5-year-old horses were analyzed. The total collagen content was determined on the basis of the 4-hydroxyproline content, using a colorimetric method. A method for estimating the proportions of types-I and -II collagen by measuring spectrophotometric densities of specific cyanogen bromide peptide bands from mixtures of types-I and -II collagen on sodium dodecyl sulfate-polyacrylamide gels was used. The cyanogen bromide peptides representative of each collagen types-I and -II were identified. The peptide ratios were then computed for each of several standards of type-I and -II mixtures. A standard curve was derived from the correlation between these ratios and the corresponding proportions of type-II collagen in standard mixtures. Galactosamine and glucosamine content (hexosamines) were measured by ion chromatography. The galactosamine-to-glucosamine ratio, chondroitin sulfate and keratan sulfate values, and total glycosaminoglycan content were derived from the measured hexosamine content. The total collagen content averaged 556 mg/g (55.6 mg/100 mg) of tissue (dry weight, [dw]). Type-II collagen was the major collagen type in normal articular cartilage specimens. The ratio of the area under the alpha 1 (II)CB10 peak to the area under the alpha 1 (I)CB 7,8 + alpha 1 (II)CB11 peak was a second-order polynomial function of the proportion of type-II collagen in the specimens. The mean galactosamine and glucosamine content were 20.6 mg/g and 7.9 mg/g (dw), respectively. The mean galactosamine-to-glucosamine ratio was 3.74 +/- 0.62.(ABSTRACT TRUNCATED AT 250 WORDS)     

Abomasal intubation of young calves.

A nonsurgical method for passing a tube into the abomasum of young calves was developed. The tube described may be used for infusion into, or sampling from, the abomasum. The tube was successfully passed into the abomasum of all eight calves used. In two calves two to four days old and in two neonatal calves (greater than 24 h old) reticular groove closure was stimulated by providing a suckling stimulus but in four neonatal calves, passage of the tube was successful without the suckling stimulus. Placement of the tip of the tube was verified by auscultation and, in two calves, by radiography.     

Attenuation of Eimeria species: further characterisation of two lines of Eimeria mitis

The immunogenicity of a 'precocious' and attenuated line (HP10) of Eimeria mitis was studied and the stability of attenuation of two precocious lines was compared with that of an embryo-adapted line. Chicks housed in wire-floored cages and given 1 X 10(5) oocysts of the HP10 line were protected against challenge with the parent Houghton strain and two field strains, but remained partially susceptible to the Durham and one other field strain. However, when chicks were kept in litter pens so that reinfection could occur freely, inoculation with as few as 1 X 10(3) oocysts of the precocious line resulted in complete immunity to both the Houghton and Durham strains for at least five weeks afterwards. The stability of attenuation of the precocious and embyro-adapted lines was examined by relaxing the selection pressures used to produce attenuation and then testing the virulence of the resulting lines. The precocious lines remained attenuated after several consecutive relaxed passages, in contrast to the embyro-adapted line which showed a marked reversion to virulence after six passages in chickens.