Identification of a universal Group B streptococcus vaccine by multiple genome screen

Group B Streptococcus (GBS) is a multiserotype bacterial pathogen representing a major cause of life-threatening infections in newborns. To develop a broadly protective vaccine, we analyzed the genome sequences of eight GBS isolates and cloned and tested 312 surface proteins as vaccines. Four proteins elicited protection in mice, and their combination proved highly protective against a large panel of strains, including all circulating serotypes. Protection also correlated with antigen accessibility on the bacterial surface and with the induction of opsonophagocytic antibodies. Multigenome analysis and screening described here represent a powerful strategy for identifying potential vaccine candidates against highly variable pathogens.     

Sulfated Polysaccharide Extracted from the Green Algae Codium bernabei: Physicochemical Characterization and Antioxidant,Anticoagulant and Antitumor Activity

Codium bernabei is a green alga that grows on Chilean coasts. The composition of its structural polysaccharides is still unknown. Hence, the aim of this work is to isolate and characterize the hot water extracted polysaccharide fractions. For this purpose, the water extracts were further precipitated in alcohol (TPs) and acid media (APs), respectively. Both fractions were characterized using different physicochemical techniques such as GC-MS, GPC, FTIR, TGA, and SEM. It is confirmed that the extracted fractions are mainly made of sulfated galactan unit, with a degree of sulfation of 19.3% (TPs) and 17.4% (ATs) and a protein content of 3.5% in APs and 15.6% in TPs. Other neutral sugars such as xylose, glucose, galactose, fucose, mannose, and arabinose were found in a molar ratio (0.05:0.6:1.0:0.02:0.14:0.11) for TPs and (0.05:0.31:1.0:0.03:0.1:0.13) for ATs. The molecular weight of the polysaccharide samples was lower than 20 kDa. Both polysaccharides were thermally stable (Tonset > 190 °C) and showed antioxidant activity according to the ABTS^•+ and DPPH tests, where TPs fractions had higher scavenging activity (35%) compared to the APs fractions. The PT and APTTS assays were used to measure the anticoagulant activity of the polysaccharide fractions. In general, the PT activity of the TPs and APs was not different from normal plasma values. The exception was the TPs treatment at 1000 µg mL⁻¹ concentration. The APTTS test revealed that clotting time for both polysaccharides was prolonged regarding normal values at 1000 µg mL⁻¹. Finally, the antitumor test in colorectal carcinoma (HTC-116) cell line, breast cancer (MCF-7) and human leukemia (HL-60) cell lines showed the cytotoxic effect of TPs and APs. Those results suggest the potential biotechnological application of sulfate galactan polysaccharides isolated from a Chilean marine resource.     

Unavailable carbohydrates in common bean cotyledon (Phaseolus vulgaris L.) Canario group

Unavailable carbohydrates in cotyledon flour were quantified from four varieties of common bean (Phaseolus vulgaris L) belonging to the Canario group. The pectin content, as percentage of anhydrogalacturonic acid, ranged between 1.57% and 2.3%. Percentages of hemicellulose A and B were similar, with average values of 2.81% and 2.61%, respectively. The polysaccharide extracted with 10% trichloroacetic acid was determined; its yield was 3.17%. This value dropped to 2.35% when the cotyledon flour was previously hydrolyzed with polygalacturonase. The average value of cellulose was 1.36%.     

Common potato disease symptoms: ambiguity of symptom-based identification of causal pathogens and value of on-site molecular diagnostics

Journal of General Plant Pathology - Because symptoms of plant diseases are often ambiguous for identifying the causal pathogen, chemical applications and cultural managements are occasionally...     

Evidence that subsistence farmers have domesticated indigenous fruits (Dacryodes edulis and Irvingia gabonensis) in Cameroon and Nigeria

Ten fruit and kernel traits were measured in 152 Irvingia gabonensis and 293 Dacryodes edulis trees from 6 villages in Cameroon and Nigeria. Frequency distribution curves were used to examine the range of variation of each trait of each species in each village and aggregated into national and regional populations. There were differences between the village sub-populations, with regard to the normality (e.g., mean kernel mass of D. edulis) or skewness (e.g., mean flesh depth of D. edulis) of the distribution curves and in the degree of separation between the individual village populations along the x axis, resulting in the development of a bimodal distribution in the regional population. For all traits, populations of both species differed significantly between countries, but only in D. edulis were there significant differences between the Cameroon populations. On the basis of the results of this study, D. edulis can be said to be virtually wild in Nigeria but semi-domesticated in Cameroon, while I. gabonensis is wild in Cameroon and semi-domesticated in Nigeria. These results are discussed with regard to a hypothesis that the range and frequency of variation in the different populations can be used to identify five stages of domestication. From a comparison of the frequency distribution curves of desirable versus undesirable traits, and statistically identifyable changes in skewness and kurtosis, it is concluded that as a result of the farmers’ own efforts by truncated selection, D. edulis is between Stages 2 and 3 of domestication (with a 67% relative gain in flesh depth) in Cameroon, while I. gabonensis in Nigeria is at Stage 2 (with a 44% relative gain in flesh depth). In this study, genetic diversity seems to have been increased, and not reduced, by domestication. This revised version was published online in June 2006 with corrections to the Cover Date.     

Effects of domestication on structural polysaccharides and dietary fiber in nopalitos (Opuntia spp.)

Domestication is an evolutionary process that modifies morphological, physiological, chemical and genetic features of wild plants, and is a product of artificial selection. A gradient of domestication can be appreciated in species of the Opuntia genus. There are wild species like O. streptacantha, others semi-domesticated like O. hyptiacantha O. megacantha and O. albicarpa, or other like O. ficus-indica with the highest degree of domestication. At the same time, some structural polysaccharides have been associated with plant drought and freeze resistance. This study aimed at quantify five groups of structural polysaccharides in 14 variants of nopalitos (edible young cladodes of flat-stemmed spiny cacti consumed as vegetables) of Opuntia spp. in a domestication gradient. Given that extreme environment is less frequent under cultivation than in the wild, we hypothesized that structural polysaccharides in nopalitos are reduced throughout the domestication process. The experiment was conducted as a completely randomized design with a 5?×?14 two-factor factorial treatment structure, with four replications. Mucilages, pectins, hemicelluloses and cellulose were extracted and dietary fiber content was calculated. ANOVA of data was performed, pair wise comparisons of species and variants were conducted by Tukey test and principal components analysis was carried out. Mucilages were higher in O. ficus-indica (12% of total dry mass) and pectins, loosely and tightly bound hemicelluloses in O. streptacantha (2.5, 9 and 3%, respectively). All five species had similar content of cellulose (5.1% dry mass); but, O. streptacantha presented more dietary fiber. Higher pectins and both loosely and tightly bound hemicelluloses content in wild species can be related to genotype and the persistence of reaction to a wild environment. Mucilages which are one of the main characteristics of consumer preference and loosely bound hemicelluloses could have impact for selection during Opuntia domestication.     

Improving the screening process for the selection of potato breeding lines with enhanced polyphenolics content

Efficient selection of potato varieties with enhanced nutritional quality requires simple, rapid, accurate, and cost-effective assays to obtain tuber chemical composition information. Our objective was to develop simple protocols to determine phenolics, anthocyanins, and antioxidant capacity in polyphenolic extracts of potatoes using Fourier transform infrared spectroscopy combined with multivariate techniques. Lyophilized potato samples (23) were analyzed. Polyphenolic compounds were extracted from potatoes and applied directly applied onto a three-bounce ZnSe crystal for attenuated total reflectance measurements in the infrared region of 4000 to 700 cm (-1). Robust models were generated (r > or = 0.99) with standard error of cross-validation values of 4.17 mg gallic acid equivalent/100 g (total phenolics), 0.87 mg pelargonidin-3-glucoside/100 g (monomeric anthocyanins), and 130.8 mumol Trolox equivalent/100 g (antioxidant capacity) potato powder. In addition, classification models discriminated potato samples at the species and variety level. Application of a simple infrared spectroscopic protocol allowed simultaneous rapid quantification of specific nutritional components in potatoes and efficient selection of value-added potato varieties.     

Why Certify? Motivations,Outcomes and the Importance of Facilitating Organizations in Certification of Community-Based Forestry Initiatives

Despite documented challenges, many community-based forestry (CBF) initiatives pursue forest certification. This study asked community-based forestry practitioners in Vermont what influenced their decisions to seek or not seek certification and what outcomes were realized from certification. Relationships, public image, value alignment and feedback on management practices were most commonly cited as both motivations for and results of certification. Expectations for economic benefits were low and price premiums for products were only occasionally realized. Informants complained of the increasing cost, complexity and time commitment required of certification. Overall, however, certified CBF informants felt certification was worth the expense. Group certificates and external funding significantly reduced certification costs to grassroots CBF initiatives. This study highlights the importance of facilitating organizations that can provide outreach, secure funding, understand the rules, handle documentation and develop markets for certified products.