The genome of the African trypanosome Trypanosoma brucei

African trypanosomes cause human sleeping sickness and livestock trypanosomiasis in sub-Saharan Africa. We present the sequence and analysis of the 11 megabase-sized chromosomes of Trypanosoma brucei. The 26-megabase genome contains 9068 predicted genes, including approximately 900 pseudogenes and approximately 1700 T. brucei-specific genes. Large subtelomeric arrays contain an archive of 806 variant surface glycoprotein (VSG) genes used by the parasite to evade the mammalian immune system. Most VSG genes are pseudogenes, which may be used to generate expressed mosaic genes by ectopic recombination. Comparisons of the cytoskeleton and endocytic trafficking systems with those of humans and other eukaryotic organisms reveal major differences. A comparison of metabolic pathways encoded by the genomes of T. brucei, T. cruzi, and Leishmania major reveals the least overall metabolic capability in T. brucei and the greatest in L. major. Horizontal transfer of genes of bacterial origin has contributed to some of the metabolic differences in these parasites, and a number of novel potential drug targets have been identified.     

Cotyledon thermal behavior and pectic solubility as related to cooking quality in common beans

The characteristic of proteins, starch and pectic substances in cotyledons of two bean cultivars varying in cooking time were determined to investigate their possible contribution to bean cooking quality. Both cultivars showed the same enthalpies of starch gelatinization but different protein denaturation enthalpies. The proportion of hot water soluble pectins was higher in Michigan, the cultivar with the lower cooking time, than in Ojo de Cabra, the cultivar with the higher cooking time. These results were not due to differences in pectin methylation or in the ratio of monovalent to divalent cations in the tissue, suggesting that in fresh beans the β-elimination reaction is not the sole or predominant route of thermal pectin degradation. Overall, this study indicates that varietal differences in bean cooking quality may be reflections of the rate of pectin loss during soaking/heating and that the thermal properties of starch and protein fractions seem to have a minor contribution. Researchers involved in this study propose that in fresh beans, the thermal pectin loss results from a two step mechanism: pectin enzymic breakdown during the bean soaking followed by thermal solubilization rather than β-elimination during the bean heating.     

Population responses of oribatids and enchytraeids to ectomycorrhizal and saprotrophic fungi in plant-soil microcosms

The oribatid mites Oppiella nova, Tectocepheus velatus and Nothrus silvestris and the enchytraeid worm Cognettia sphagnetorum are four common animal species in boreal forest soils. According to the literature, they respond differently to clear-cutting of forest stands. O. nova responds with population decreases, T. velatus and N. silvestris with small changes and C. sphagnetorum with population increases. We hypothesised that the presence/absence of ectomycorrhizal (EM) fungi is a major factor in explaining these reactions. The population responses of these soil animals to inoculation of five species of EM fungi growing in symbiosis with their host tree (Pinus sylvestris L.) and one saprotrophic fungus, Hypholoma capnoides, growing on wood were tested in pot microcosms with artificial soil (peat and vermiculite) for 70-84 days. Additionally, plants without inoculation of EM fungi, plants growing in forest soil (FS) and plant-free peat and vermiculite (PV) were included. O. nova increased significantly in abundance in the treatments with the EM fungi Suillus variegatus and Paxillus involutus, but not in the other treatments. T. velatus increased significantly in abundance in FS, but declined in most of the other treatments, and N. silvestris showed a similar, albeit not significant, response. C. sphagnetorum did not increase in abundance in any of the treatments with EM fungi but increased its abundance four times in both FS and PV. The results show that the fungivore O. nova preferentially feeds on certain EM fungi, especially S. variegatus, whereas the EM fungus Piloderma fallax and the saprotrophic H. capnoides are not preferred. In contrast, C. sphagnetorum is restricted in its population growth by the EM fungi studied, and this dominant microbi-detritivore is clearly favoured by the absence of EM fungi.     

Effects of intra-vineyard variability and soil heterogeneity on vine performance,dry matter and nutrient partitioning

Three vigor zones, identified in a Barbera vineyard by remote sensing at full canopy, were carefully ground-truthed to determine, over 2 years, the relative weight of soil factors in affecting within-field variability, and to investigate vigor zone influence on dry matter (DM) and nutrient partitioning into different vine organs. Regardless of season, high vigor (HV) achieved stronger vine capacity as total vegetative growth and yield while resulting in markedly less ripened fruits than low vigor (LV) vines. PCA analysis carried out on ten different soil and vine variables clearly separated the three vigor levels and the correlation matrix highlighted that the factors mostly contributing to HV were soil depth, soil K and P concentration, total available water, clay fraction and N_leaf concentration. Conversely, sand fraction was the main marker for LV. When annual DM retrieved in clusters, canes, leaves, and shoot clippings was calculated for each vigor level and expressed as content (i.e. kg/ha) there was a general decreasing trend moving from HV to LV. However, when DM partitioned to each organ was given on a relative basis (i.e. percentage over total) results were similar across vigor levels. Similarly, when nutrients were given as content (e.g. kg or g/ha) out of 120 within-vigor combinations (12 nutrients, 2 seasons, 5 organs), 65 showed a significant difference between HV and LV. Conversely, with data expressed on a concentration basis (i.e. % DM) the number of significant differences between the vigor level means fell to 15. The study strengthens the causal link between soil properties and intra-vineyard spatial variability and clarifies that patterns of dry matter and nutrient partitioning to different vine organs are mildly affected by vine vigor when referred on a relative basis.

     

Hydrocolloid interaction with water, protein, and starch in wheat dough

Interaction of hydrocolloids (xanthan gum, locust bean gum, guar gum, and high-methoxyl pectin) with macrocomponents of dough (water, starch, and protein) was evaluated by different techniques. (1)H spin-spin NMR relaxation assays were applied to study the mobility of the gluten-hydrocolloid-water matrix, and the amount of freezable water was determined by differential scanning calorimetry (DSC). Starch gelatinization parameters (T, enthalpy) were also analyzed by DSC. The influence of additives on the protein matrix was studied by Fourier transform (FT) Raman assays; analysis of the extracted gliadins and glutenins was performed by electrophoresis (SDS-PAGE). A significantly higher molecular mobility was found in matrices containing xanthan gum, whereas pectin led to the lowest molecular mobility. Freezable water showed a trend of increasing in the presence of hydrocolloids, particularly under conditions of water restriction. Starch gelatinization final temperature was decreased when hydrocolloids were added in the presence of enough water. In general, FT-Raman and SDS-PAGE indicated that hydrocolloid addition promoted a more disordered and labile network, particularly in the case of pectin addition. On the other hand, results obtained for dough with guar gum would indicate a good compatibility between this hydrocolloid and the gluten network.     

Relation of peel damage in citrus fruit to wind climate in orchard and its control

Peel damage originated by wind is the main abiotic cause of citrus fruit discards for export in Uruguay. Natural windbreaks such as Eucalyptus and Casuarinas have not been effective in reducing it. This research was carried out during three years in a citrus orchard situated in the coastal plain of Uruguay (35° SL). The purpose of this work was to study wind climate inside the orchard, fruit seasonal sensitivity, basal leaf effect on the onset and evolution of peel damage, and the efficiency of artificial windbreaks to reduce fruit discard of ‘Ellendale’ tangor. Average wind velocity in the orchard did not exceed 5 m s⁻¹. First peel scars were evident two weeks after petal fall and damaged fruit percentage importantly increased during the first stage of fruit growth. Low energy vortexes caused almost permanent friction between basal leaves and the developing fruitlets growing in their axil. Removal of the basal leaf decreased significantly wind damaged fruit. Natural wind flow modification through the use of semi-porous artificial windbreak nets (5 cm by 10 cm mesh) modified low energy vortexes and increased significantly the percentage of export quality fruit. We conclude that this type of net is more efficient than natural windbreaks or classical nets to reduce wind damage in citrus fruit.     

Effect of foliar applications of phosphite on post-harvest potato tubers

The utilization of phosphites (Phi) could be considered as another strategy to be included in integrated disease management programmes to reduce the intensive use of fungicides and production costs. The aim of the present work was to analyze whether the beneficial effects of phosphite treatment previously observed in potato plants grown under greenhouse conditions, were reflected after harvest of field grown potatoes, both in disease protection and in yield. In addition, biochemical compounds possibly involved in induced defence responses by Phi, like phytoalexins, pathogenesis related proteins and oxidative stress enzymes were measured. Foliar applications of KPhi to field grown crops resulted in post-harvest tubers with a reduced susceptibility to Phytophthora infestans, Fusarium solani and Erwinia carotovora infections, suggesting that this compound induced a systemic defence response. An increase in phytoalexin content in P. infestans inoculated tubers obtained from Phi-treated plants suggests their participation in the defence response. Chitinase content increased 72 h after wounding or inoculation with P. infestans in tubers from KPhi-treated plants compared to wounded or infected tubers from non-treated plants. Contrary to this, the isoforms of β-1,3-glucanases analyzed did not increase in the tubers of Phi-treated plants. The increment in peroxidase and polyphenol oxidase activities indicated that these enzymes could be part of the Phi defence mechanism. No negative effects were observed in potato yield at harvest, measured as total tuber weight and dry matter, after foliar KPhi treatment. This suggests that the energetic cost involved in the defence response activation would not be detrimental to plant growth.     

Hemoglobins S and C interfere with actin remodeling in Plasmodium falciparum-infected erythrocytes

The hemoglobins S and C protect carriers from severe Plasmodium falciparum malaria. Here, we found that these hemoglobinopathies affected the trafficking system that directs parasite-encoded proteins to the surface of infected erythrocytes. Cryoelectron tomography revealed that the parasite generated a host-derived actin cytoskeleton within the cytoplasm of wild-type red blood cells that connected the Maurer's clefts with the host cell membrane and to which transport vesicles were attached. The actin cytoskeleton and the Maurer's clefts were aberrant in erythrocytes containing hemoglobin S or C. Hemoglobin oxidation products, enriched in hemoglobin S and C erythrocytes, inhibited actin polymerization in vitro and may account for the protective role in malaria.