Genome-wide association study for age at puberty in young Nelore bulls

Selection for bulls that would reach puberty early reduces the generation interval and increases fertility and herd productivity. Despite its economic importance, there are few QTL associated with age at puberty described in the literature. In this study, a weighted single-step genome-wide association study was performed to detect genomic regions and putative candidate genes related to age at puberty in young Nelore bulls. Several protein-coding genes related to spermatogenesis functions were identified within the genomic regions that explain more than 0.5% of the additive genetic variance for age at puberty in Nelore bulls, such as ADAM11, BRCA1, CSNK2A, CREBBP, MEIOC, NDRG2, NECTIN3, PARP2, PARP9, PRSS21, RAD51C, RNASE4, SLX4, SPA17, TEX14, TIMP2 and TRIP13 gene. Enrichment analysis by DAVID also revealed several GO terms related to spermatogenesis such as DNA replication (GO:0006260), male meiosis I (GO:0007141), double-strand break repair (GO:0006302), base excision repair (GO:0006284), apoptotic process (GO:0006915), cell–cell adhesion (GO: 0098609) and focal adhesion (GO:0005925). The heritability for age at puberty shows that this trait can be improved based on traditional EBV selection. Adding genomic information to the system helps to elucidate genes and molecular mechanisms controlling the sexual precocity and could help to predict sexual precocity in Nelore bulls with greater accuracy at younger age, which would speed up the breeding programme for this breed.     

Wildlife translocation: the conservation implications of pathogen exposure and genetic heterozygosity

Background

Efficient division of reproductive labor is a crucial characteristic of social insects and underlies their ecological and evolutionary success. Despite of the harmonious appearance of insect societies, nestmates may have different interests concerning the partitioning of reproduction among group members. This may lead to conflict about reproductive rights. As yet, few studies have investigated the allocation of reproduction among queens in multi - queen societies ("reproductive skew"). In the ant Leptothorax acervorum, reproductive skew varies considerably among populations. While reproduction is quite equally shared among nestmate queens in most populations from boreal Eurasia (low skew), colonies from populations at the edge of the species' range are characterized by "functional monogyny," i.e., high skew. The proximate mechanisms underlying high skew, in particular how workers influence which queen lays eggs, are not well understood. We investigated the behavior of queens and workers in functionally monogynous colonies of L. acervorum from two mountain ranges in central Spain.

Results

We provide evidence for both queen and worker influence on the outcome of conflict over reproduction in colonies of L. acervorum from Spain. The patterns of queen - queen aggression and worker - queen grooming and feeding after hibernation allowed predicting, which queen later began to lay eggs. In contrast, worker aggression towards queens was not clearly associated with a queen's future reproductive success. Queen - queen and worker - queen aggression differed in quality: queens typically engaged in ritualized dominance behavior, such as antennal boxing, while workers also attacked queens by biting and prolonged pulling on their legs and antennae. In several cases, overt worker aggression led to the expulsion of queens from the nest or their death.

Conclusion

We conclude that queens of L. acervorum from Spain establish rank orders by ritualized dominance interactions, such as antennal boxing. Workers may reinforce these hierarchies by preferentially feeding and grooming high ranking queens and attacking lower ranking queens. Aggressive worker policing may thus stabilize functional monogyny. Optimal skew models predict that high skew in ants is associated with high dispersal costs. In central Spain, L. acervorum is restricted to small patches at higher elevations, which presumably makes dispersal and colony founding difficult. Because of the ecological requirements of L. acervorum and the predicted large impact of global change on central Spain, the functionally monogynous populations of this ant must be considered as threatened.     

Precision agriculture research in sub-Saharan Africa countries: a systematic map

Precision agriculture (PA) has a huge potential for growth in sub-Saharan Africa (SSA), but it faces a number of social-economic and technological challenges. This study sought to map existing PA research and application in SSA countries following the methodology for systematic mapping in environmental sciences. After screening for relevance, the initial about 7715 articles was reduced to 128. Results show that most of the studies were conducted in countries with socio-economic and technological advancement, mainly South Africa followed by Nigeria and Kenya. The studies were conducted at various scales ranging from field to country level with field scale studies being the most common. Most studies were conducted in relatively small farms typical of most farmlands in SSA. Studies done in relatively large farms are fewer, and such farms would likely belong to a few organisations and individuals with high economic capacity. Many of these studies have been conducted by researchers from outside SSA and a combination of researchers from within and outside SSA. However, based on authorship of the articles, it appears that most of the studies conducted in SSA on precision agriculture have either involved or depended on non-African researchers. It is concluded that there have been significant strides towards use of precision agriculture in SSA. However, with about 21 countries having no research done, there exists greater potential for precision agriculture in the region. Besides, there is need for more research to investigate the low usage of precision agriculture for livestock management.

     

Interaction between jasmonic and gibberellic acids on in vitro tuberization of potato plantlets

Summary A reverse of the delaying effect of gibberellic acid (GA₃) was observed in in vitro tuberization of potato plantlets when the medium contained 0.8×10⁻⁵ M jasmonic acid (JA). The promoting effect of JA seemed to be correlated with the initial absence of growing roots, probably through direct activity of JA in microtuber-producing buds in the stoloniferous shoots. This is based on the fact that JA did not inhibit root growth a posteriori. Endogenous gibberellins (GAs) synthesized by roots did not interfere with the previous activity of JA in tuberization. The absence of a JA promoting-effect on tuberization of previously-rooted plantlets could be related to the capacity of potato roots to synthesize endogenous GAs which might antagonize the JA effect on buds of stoloniferous shoots.     

Identification and Molecular Mapping of the RsDmR Locus Conferring Resistance to Downy Mildew at Seedling Stage in Radish (Raphanus sativus L.)

Downy mildew (DM), caused by the fungus Peronospora parasitica, is a destructive disease of radish (Raphanus sativus L.) worldwide. Host resistance has been considered as an attractive and environmentally friendly approach to control the disease. However, the genetic mechanisms of resistance in radish to the pathogen remain unknown. To determine the inheritance of resistance to DM, F₁, F₂ and BC₁F₁ populations derived from reciprocal crosses between a resistant line NAU-dhp08 and a susceptible line NAU-qtbjq-06 were evaluated for their responses to DM at seedling stage. All F₁ hybrid plants showed high resistance to DM and maternal effect was not detected. The segregation for resistant to susceptible individuals statistically fitted a 3:1 ratio in two F₂ populations (F_2(SR) and F_2(RS)), and 1:1 ratio in two BC₁F₁ populations, indicating that resistance to DM at seedling stage in radish was controlled by a single dominant locus designated as RsDmR. A total of 1972 primer pairs (1036 SRAP, 628 RAPD, 126 RGA, 110 EST-SSR and 72 ISSR) were screened, and 36 were polymorphic between the resistant and susceptible bulks, and consequently used for genotyping individuals in the F₂ population. Three markers (Em9/ga24₃₇₀, NAUISSR826₇₀₀ and Me7/em10₄₀₀) linked to the RsDmR locus within a 10.0 cM distance were identified using bulked segregant analysis (BSA). The SRAP marker Em9/ga24₃₇₀ was the most tightly linked one with a distance of 2.3 cM to RsDmR. These markers tightly linked to the RsDmR locus would facilitate marker-assisted selection and resistance gene pyramiding in radish breeding programs.     

Argentinian potato leafroll virus P0 protein: Novel activities for a previously known suppressor

The potato leafroll virus (PLRV) P0 protein (P0^PL) is a suppressor of RNA silencing. In this study, we showed that P0 protein from an Argentinian isolate of PLRV (P0^PL-Ar) has an additional activity not described for other PLRV or P0 proteins from poleroviruses. Besides reporting that P0^PL-Ar displays both local and systemic silencing suppressor activity, we demonstrated, for the first time, that P0^PL-Ar impedes accumulation of dsRNA-derived siRNAs. We also showed that P0^PL-Ar interacts with Solanum tuberosum SKP1 orthologue (StSKP1) and triggers destabilization of ARGONAUTE 1 (AGO1) and that these actions are mediated by the F-box-like domain. A mutant in the GW/WG motif within the P0^PL-Ar F-box-like motif lost the suppression activity, the interaction with StSKP1 and abolished AGO1 decay. Interestingly, a mutant in the L76/P77 residues within the P0^PL-Ar F-box-like motif, which lost the suppression activity and the interaction with StSKP1, retained the capacity to enable AGO1 decay. Thus, unlike other P0 proteins of previously characterized poleroviruses, P0^PL-Ar seems to have a dual activity, according to the findings of this study. This protein would act at both an upstream and a downstream step of the RNA silencing pathway: upstream of Dicer-like enzyme (DCL)-mediated primary siRNA production and downstream at the RNA-induced silencing complex (RISC) complex level. Our results contribute to the understanding of the different ways PLRV P0 proteins function as silencing suppressors.     

Selective logging of lowland evergreen rainforests in Chiloé Island, Chile: Effects of changing tree species composition on soil nitrogen transformations

Lowland evergreen rainforests in southern Chile growing on highly productive soils and accessible sites have been subjected to traditional and industrial logging of valuable timber trees. Old-growth rain forests in this area are characterized by highly conservative N cycles, which results in an efficient N use of ecosystems. We hypothesize that different logging practices, by changing forest structure and species composition, can alter the quantity and quality (i.e. C/N ratio) of litterfall and soil organic matter and soil microbial processes that determine N storage and availability. To test this hypothesis we investigated chemical properties, microbial N transformations, N fluxes and N storage in soils of lowland evergreen rainforests of Chiloé Island after 10 years since industrial selective logging (ISL) and in stands subjected to traditional selective logging (TSL) by landowners in small properties. We compared them to reference unlogged old-growth stands (OG) in the same area. Tree basal area was more reduced in the stands subjected to ISL than to TSL. Litterfall inputs were similar in both logging treatments as in OG stands. This was due to greater biomass of understory species after logging. In TSL understory tree species determined a higher litterfall C/N ratio than ISL. We found higher soil N availability and content of base cations in surface soils of logged forests than in OG. The litter horizon of OG forest had significantly higher rates of non-symbiotic N fixation than logged forests. In the ISL treatment there was a trend toward increasing soil denitrification and significantly higher NO₃–N/N_t ratio in spring waters, which led to a stronger δ¹⁵N signal in surface and deep soils. We conclude that massive understory occupation by the shade-intolerant native bamboo Chusquea quila in ISL led to enhanced litter quality (lower C/N ratios) relaxing the tightness of the N cycle, which increased soil N availability leading to a higher proportion of nitrate in spring waters and higher gaseous N losses. In contrast, under TSL a higher litterfall C/N ratio slowed decomposition and net N mineralization rates thus reducing the chances for N losses, and enhancing C and N storage in soil. We suggest that sustainable logging practices in these rain forests should be based on lower rates of canopy removal to enhance colonization of the understory by shade-tolerant trees, which are associated with a more efficient N cycle.     

A comparison of soil- and canopy temperature-based methods for the early detection of water stress in a simulated patch of pasture

This paper evaluates the sensitivity of two different methods of water stress detection in a simulated patch of pasture grown in a greenhouse. The performance of two indices, based respectively on canopy temperature and soil water content values — the latter gauged by means of a time domain reflectometry (TDR) system, was assessed against actual evapotranspiration, measured by a very accurate weighing system. Both methods were able to detect water shortage by the time transpiration was reduced to some 80% of its potential value. The soil-based index, however, relied on the estimate of root water extraction rate, which may not be known. It is concluded that detection of water shortage by means of a canopy temperature-based stress index is to be preferred to measuring soil water deficits by time domain reflectometry, despite the accuracy of the TDR-based soil water content estimate.     

Changes in understory species diversity during theNothofagus pumilio forest management cycle

Human commercial activities must be compatible with sustainable management to achieve species conservation in the natural environment. After harvesting, diversity and abundance of understory species differ substantially from the pre-harvest situation. Have knowledge of the changes that logging produces in all components of the system allows us to develop management alternatives with reduced impacts. The objective of this work was to evaluate changes in density, biomass and diversity of understory species along a forest shelterwood cut system management cycle in aNothofagus pumilio forest. Six forest management situations (postharvesting stands and different phases of forest development) were sampled in a pureN. pumilio forest of Tierra del Fuego (Argentina) of middle-high site class (fromclass I toIII). Species number, density and biomass were modified substantially after a shelterwood cut. These were being greatest after cutting and falling substantially when the forest canopy closes during theinitial growth phase, returning to values similar to this virgin forest when themature phase was reached. The impact of the forest management on understory species diversity is analyzed and discussed. The silvicultural practices applied toN. pumilio forest in Tierra del Fuego permit the introduction of alien flora to the system, and produce great changes during the forest management cycle. To Celina Matteri, Itatí Ferraro, and Rosa Kofalt for their aid in taxonomical identification. To Juan Manuel Cellini, Ricardo Vukasovic and Gregorio Martínez Pastur for their participation in the field work; and to the sawmillLos Castores, Universidad Nacional de la Patagonia Austral, Centro Austral de Investigaciones Científicas and Instituto Nacional de Tecnología Agropecuaria for the institutional and financial support.