Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase

Silent information regulator 2 (Sir2) proteins (sirtuins) are nicotinamide adenine dinucleotide-dependent deacetylases that regulate important biological processes. Mammals have seven sirtuins, Sirt1 to Sirt7. Four of them (Sirt4 to Sirt7) have no detectable or very weak deacetylase activity. We found that Sirt5 is an efficient protein lysine desuccinylase and demalonylase in vitro. The preference for succinyl and malonyl groups was explained by the presence of an arginine residue (Arg(105)) and tyrosine residue (Tyr(102)) in the acyl pocket of Sirt5. Several mammalian proteins were identified with mass spectrometry to have succinyl or malonyl lysine modifications. Deletion of Sirt5 in mice appeared to increase the level of succinylation on carbamoyl phosphate synthase 1, which is a known target of Sirt5. Thus, protein lysine succinylation may represent a posttranslational modification that can be reversed by Sirt5 in vivo.     

Direct measurement of the reaction front in chemically amplified photoresists

The continuing drive by the semiconductor industry to fabricate smaller structures using photolithography will soon require dimensional control at length scales comparable to the size of the polymeric molecules in the materials used to pattern them. The current technology, chemically amplified photoresists, uses a complex reaction-diffusion process to delineate patterned areas with high spatial resolution. However, nanometer-level control of this critical process is limited by the lack of direct measurements of the reaction front. We demonstrate the use of x-ray and neutron reflectometry as a general method to measure the spatial evolution of the reaction-diffusion process with nanometer resolution. Measuring compositional profiles, provided by deuterium-labeled reactant groups for neutron scattering contrast, we show that the reaction front within the material is broad rather than sharply defined and the compositional profile is altered during development. Measuring the density profile, we directly correlate the developed film structure with that of the reaction front.     

Toxic pneumonitis caused by inhalation of hydrocarbon waterproofing spray in two dogs

CASE DESCRIPTION: 2 dogs were evaluated because of vomiting and lethargy (a Toy Poodle; dog 1) and acute respiratory distress, vomiting, and anorexia (a Chihuahua; dog 2). Dog 1 had been exposed to a commercial hydrocarbon waterproofing spray 24 hours before the development of clinical signs, and dog 2 was examined 18 hours after exposure to a waterproofing spray containing heptane, a highly flammable liquid hydrocarbon. CLINICAL FINDINGS: In both dogs, major gastrointestinal tract abnormalities were ruled out but respiratory status worsened. Thoracic radiography revealed a diffuse interstitial pulmonary pattern, and hypoxemia was detected. TREATMENT AND OUTCOME: Hospitalization for monitoring and care was required for both dogs. The dogs recovered with supportive care, which included administration of oxygen, fluids, and bronchodilators. Additionally, dog 1 received glucocorticoids via inhalation and supplemental enteral nutrition, whereas dog 2 was treated with an antimicrobial. CLINICAL RELEVANCE: The dogs of this report developed hydrocarbon pneumonitis following exposure to waterproofing sprays. Such sprays contain potentially toxic hydrocarbons. The severity of the adverse effects associated with exposure may have been amplified because the dogs were physically small and were exposed to a relatively large amount of aerosolized spray within small areas. Development of chemical pneumonitis in pet animals is best prevented by application of waterproofing sprays in well-ventilated or outdoor areas from which pets have been excluded. With prolonged hospitalization and considerable monitoring and care, affected dogs can recover from these exposures.     

Radiative absorption enhancements due to the mixing state of atmospheric black carbon

Atmospheric black carbon (BC) warms Earth's climate, and its reduction has been targeted for near-term climate change mitigation. Models that include forcing by BC assume internal mixing with non-BC aerosol components that enhance BC absorption, often by a factor of ~2; such model estimates have yet to be clearly validated through atmospheric observations. Here, direct in situ measurements of BC absorption enhancements (E(abs)) and mixing state are reported for two California regions. The observed E(abs) is small-6% on average at 532 nm-and increases weakly with photochemical aging. The E(abs) is less than predicted from observationally constrained theoretical calculations, suggesting that many climate models may overestimate warming by BC. These ambient observations stand in contrast to laboratory measurements that show substantial E(abs) for BC are possible.     

Growth, Survival and Reproductive Performance of Domesticated Australian Stocks of the Giant Tiger Prawn, Penaeus monodon, Reared in Tanks and Raceways

The growth, survival and reproductive performance of domesticated Australian stocks of the giant tiger shrimp Penaeus monodon were evaluated in trials conducted in 1997 and 2003. The 1997 trials assessed the performance of first generation progeny of wild broodstock from the northeast coast of Australia and fourth generation progeny of pond‐reared broodstock, which also originated from northeast coast wild stocks. In these trials, growth and survival of the shrimp were assessed when reared for 17 mo in tanks. Reproductive performance of the shrimp was assessed at 14.5 mo and 17 mo. The 2003 trials assessed the performance of first generation progeny of wild broodstock from the Gulf of Carpentaria (north coast of Australia). In these trials, growth and survival of shrimp were assessed when reared for 14 mo in tanks and raceways. Reproductive performance of the shrimp was assessed at 11 mo, 12 mo, and 15 mo. Growth and reproductive performance of the stocks varied between trials, families, ages and rearing systems. The most pronounced differences in growth and reproductive performance were between the 1997 and 2003 trials. At 11 mo of age, the average wet weight of the shrimp in the 2003 trials (females 117.1 ± 5.8 g; males 87.9 ± 7.6 g) was 200% greater than the average wet weight of shrimp in the 1997 trials (females 55.2 ± 6.8 g; males 41.2 ± 3.4 g). The reproductive performance of the shrimp was also higher in the 2003 trials in terms of the percentage of spawnings hatching (52.0% in 1997; 77.1% in 2003) and mean hatch rate (21.5% in 1997; 31.6% in 2003). Differences in the growth and reproductive performance of the tank‐reared stocks between years were indicative of significant improvements in the rearing environment, diet and husbandry techniques. Variation in the reproductive performance between families was consistent across rearing environments and at different ages and suggests the potential to improve reproductive performance through genetic selection. Notably, this study identified hatch rates of nauplii from the spawned eggs as a key area for future improvement of domesticated stocks reared in tanks and raceways. Future efforts to improve the growth and reproductive performance of domesticated P. monodon could benefit from integrating incremental improvements to husbandry with genetic selection.     

Growth enhancement of rainbow trout (Oncorhynchus mykiss) by passive immunization against somatostatin-14

Juvenile rainbow trout (Oncorhynchus mykiss) were passively immunized by intraperitoneal immunization against somatostatin-14 (SS-14) using an antibody originating from egg-laying chicken (Gallus domesticus). Fish were immunized weekly (0, 7, 14, 21, 28, 35 days) with chicken egg yolk-derived immunoglobulin (IgY) against SS-14 (1:25 IgY, 5 mg mL^?1), and growth performance, feed utilization as well as plasma concentrations and mRNA levels of growth hormone (GH) and insulin-like growth factor I (IGF-I) were compared to the control group that received placebo immunization with PBS. Passive immunization significantly increased weight gain of treated fish (67.7 ± 7.4 g) compared to the control group (40.1 ± 2.0 g) after 35 days (p < 0.05). Feed conversion ratio (FCR) was significantly improved in the immunized fish (0.7 ± 0.08) compared to control group (1.2 ± 0.06) (p < 0.05). The concentrations of GH and IGF-I in the blood plasma showed no significant differences between the fish treated with anti-SS-14 and those of control during the treatment (p > 0.05). In both groups, GH levels decreased over the 35 days of the experiment (p < 0.05). However, IGF-I level during the period of treatment remained unchanged in both control and immunized fish with the anti-SS-14. Similarly, no changes were observed in pituitary GH and liver IGF-I mRNA levels between treatment and control at each sampling time (p > 0.05). There was no indication of a cumulative, long-lasting effect of repeated immunization on GH or IGF-I plasma concentrations or mRNA expression. The present study shows that a passive immunization of rainbow trout against SS-14 using a chicken egg yolk-derived SS-14 antibody could increase growth rate and improved FCR.     

Comparing fire spread algorithms using equivalence testing and neutral landscape models

We demonstrate a method to evaluate the degree to which a meta-model approximates spatial disturbance processes represented by a more detailed model across a range of landscape conditions, using neutral landscapes and equivalence testing. We illustrate this approach by comparing burn patterns produced by a relatively simple fire spread algorithm with those generated by a more detailed fire behavior model from which the simpler algorithm was derived. Equivalence testing allows objective comparisons of the output of simple and complex models, to determine if the results are significantly similar. Neutral landscape models represent a range of landscape conditions that the model may encounter, allowing evaluation of the sensitivity and behavior of the model to different landscape compositions and configurations. We first tested the model for universal applicability, then narrowed the testing to assess the practical domain of applicability. As a whole, the calibrated simple model passed the test for significant equivalence using the 25% threshold. When applied to a range of landscape conditions different from the calibration scenarios, the model failed the tests for equivalence. Although our particular model failed the tests, the neutral landscape models were helpful in determining an appropriate domain of applicability and in assessing the model sensitivity to landscape changes. Equivalence testing provides an effective method for model comparison, and coupled with neutral landscapes, our approach provides an objective way to assess the domain of applicability of a spatial model.