Root growth and the relative importance of root and shoot competition in interactions between rice (Oryza sativa) and Echinochloa crus-galli

Competition between rice (Oryza sativa) and Echinochloa crus-galli (L.) Beauv. (barnyard-grass or cockspur) was studied experimentally in the field in Sri Lanka. By growing rice in bags sunk in the paddy soil such.that the roots of the plants were either separated from or free to mingle with those of neighbouring weeds, or by growing rice in the same bags but in the absence of weeds, it was possible to calculate the relative importance of interference below ground (root competition) and above ground (shoot competition). Three rice varieties with different above-ground morphology were inhibited to different extents by E. crus-galli but in each case root competition was more important than shoot competition. In the variety that was most sensitive to root competition, Bg 400–1, inhibition of total growth due to root competition increased with increasing weed density. When grown in monocultures in pots in the field, the two species exhibited similar growth rates whether or not the soil was fertilized, but in 1:1 mixtures growth of E. crus-galli was greater, particularly if fertilizer was added, as this promoted the growth of the weed, while having no effect on the rice. In mixture, relative yield totals were close to 1.0, with the relative yield of E. crus-galli being consistently greater than 0.5, particularly with added nutrients, while the relative yield of rice was always less than 0.5. The relative crowding coefficient for rice with respect to E. crus-galli (K_eb), when based on total plant dry weight, was lower in fertilized than in non-fertilized soil, falling in the former case from 0.4 to 0.2 during the experiments Kroot_rb, based on root dry weight, decreased with increasing soil depth and was lower in fertilized than in non-fertilized soil, most notably after 62 days of growth, when root dry weight was at its maximum. It is concluded that inhibition of root growth of rice, leading to a reduced ability to obtain resources from the soil, was the major factor contributing to the decline in the growth of rice in the presence of E. crus-galli. Croissance racinaire et importance relative de la compétition racinaire et aérienne dans les interactions entre le riz (Oryza sativa) et le panic (Echinochloa crus-galli) La competition entre le riz (Oryza sativa) et le panic (Echinochloa crus-galli) a étéétudiée dans une expérimentation de plein champ au Sri Lanka. En cultivant du riz dans des sachets immergés dans la riziére de telle façon que ses racines soient soil séparées, soil libres de se mé1anger avec celles des adventices voisines, ou en cultivant du riz dans des sachets analogues mais en 1'absence de mauvaises herbes, il est possible de calculer 1'importance relative de 1'interférence sous le sol (compétition racinaire) et de celle au dessus du sol (compétitionaérienne). 3 variétés de riz ayant une morphologie aérienne différente ont été inhibées par le panic à des niveaux différents mais chaque fois la compétition racinaire a été plus importante que l'aérienne. Chez la variété la plus sensible à la compétition racinaire, Bg 400–1, le ralentissement de la croissance totale due à la compétition racinaire augmenta avec l'augmentation de la densité de mauvaises herbes. Quand elles sont cultivées en pots dans les champs, les deux espèces ont des taux de croissance similaires que le sol soit ou non fertilisé, mais dans un mélange 1/1 la croissance du panic est plus forte surtout si l'on ajoute de l'engrais puisque celui-ci favorise la croissance de l'adventice sans avoir d'effet sur le riz. En mélange, le total des poids relatifs était très proche de 1, avec un poids relatif de panic conséquemment plus grand que 0,5, surtout dans le cas d'adjonction d'engrais, tandis que celui du riz était toujours inférieur à 0,5. Le coefficient de tassement relatif du riz en regard du panic (K_rb), basé sur le poids sec de la plante entière était plus faible dans les sols fertilisés que dans les autres, tombant de 0,4 à 0,2 pendant l'expérimentation. KracinC_rb, basé sur le poids sec de racine, diminue avec l'augmentation de la profondeur du sol et est plus bas dans les sols fertilisés que dans les autres, surtout après 62 jours de croissance quand le poids sec de racine est à son maximum. Il est conclu que le ralentissement de la croissance des racines de riz, aboutissant à une capacité moindre à prélever les ressources du sol, était le facteur principale de la réduction de la croissance du riz en présence de panic. Wurzelwachstum von und Wurzel- sowie Sproßkonkurrenz zwischen Reis (Oryza sativaj und Echinochloa crus-galli In Freilandversuchen in Sri Lanka zur Wurzelund Sproßkonkurrenz zwischen Reis (Oryza sativa L.) und Hühnerhirse (Echinochloa crus-galli (L.) Beauv.) wurde Reis so in Beuteln gepflanzt, daß seine Wurzeln sich entweder getrennt oder mit denen des Unkrauts zusammen wachsend entwickeln konnten. Andere Parzellen blieben unkrautfrei. E. crus-galli konkurrierte mit 3 Reissorten von unterschiedlicher Sproßmorphologie verschieden stark, doch die Wurzelkonkurrenz war immer bedeutender als die Sproßkonkurrenz. Bei der gegen Wurzelkonkurrenz empfindlichsten Sorte “Bg 400–1” war die Gesamthemmung auf die mit der Unkrautdichte zunehmende Wurzelkonkurrenz zurückzuführen. In Monokultur hatten beide Arten unabhängig von der Düngung ähnliche Wachstumsraten, aber in l:l-Mischkulturwuchs E. crus-galli stärker, besonders bei Düngung, die auf den Reis wirkungslos blieb. In Mischkultur lag der relative Gesamtertrag nahe 1,0, wobei der Ertrag von E. crus-galli stets über 0,5, der des Reises jedoch immer unter 0,5 lag. Für die Wechselbeziehung zwischen Reis und E. crus-galli auf die Gesamttrockenmasse wurde ein ‘crowding coefficient’ (K_rb) für Reis berechnet, der mit Düngung kleiner war als ohne. K_rb nahm während des Versuchs von 0,4 auf 0,2 ab. Der auf die Wurzeltrockenmasse bezogene ‘crowding coefficient’ (Kroot_rb) nahm mit zunehmender Bodentiefe ab. Kroot_rb war niedriger in gedüngtem verglichen mit ungedüngtem Boden. Dieser Unterschied war nach 62 Tagen Wachstum besonders deutlich, als die Wurzeltrockenmasse ein Maximum erreichte. Die Hemmung des Wurzelwachstums des Reises wurde als wichtiger Faktor für seine Wachtum-shemmung in der Gegenwart von E. crus-galli angesehen, weil sie die Fähigkeit des Reises zur Nährstoffaufnahme aus dem Boden verringert.     

Insecticide resistance in cotton aphid Aphis gossypii (Glov.) in the Sudan Gezira

The resistance to insecticides of three Sudanese strains of A. gossypii (Glov.) collected from cotton fields in the Sudan Gezira Scheme over three seasons (1988, 1989, 1990) and that of two French strains was studied in the laboratory. When compared with a known susceptible strain, the aphids were found to be resistant-to the eight insecticides tested. Evolution of resistance in Sudanese strains during the three crop seasons was observed. Assay of aphid homogcnate for carboxytesterase activity towards the substrates α-naphthyl acetate and β-naphthyl acetate showed that there was no enhancement of this class of enzyme and thus it was not a cause of resistance in this species. A study of interaction between the acetylcholinesterase (AchE) and pirimicarb established the kinetics of the inhibition process. I₅₀ values were found to be much higher for the Sudanese strains than for the susceptible strain. First-order inhibition kinetics revealed that resistance towards pirimicarb in Sudanese-strains was caused by a modified AchE which had a reduced affinity (higher K_a value) and poor carbamylation ability (lower K₂ value) for pirimicarb. The resistance mechanisms for the other insecticides remain to be studied.     

Assessment of inoculation methods for screening black alder resistance to Phytophthora ×alni

Identification of resistance to Phytophthora ×alni could provide the basis for a management strategy against alder decline in riparian ecosystems in Europe. This study aimed to test methods to evaluate the resistance of riparian alders to the disease, and to screen alder genotypes for resistance. Phytophthora ×alni isolates were compared for their aggressiveness (lesion length on stem) and sporulation capacity (sporangia). While no difference in lesion lengths was found between isolates, sporangia production was dependent on isolate, highlighting the need for careful selection of isolates used for zoospore inoculation methods. Inoculation tests carried out at different periods of the year revealed a seasonal change in susceptibility to the disease, with the period from June to September being the most efficient for inoculation tests. Stem‐wounded inoculations, carried out on excised shoots, were unreliable for evaluating the level of resistance of alder genotypes to P. ×alni infection, with divergent results between two successive years or between two inoculation periods during the same year. In contrast, a method that mimics the natural conditions of infection, based on flooding of rooted cuttings in artificially infected river water, was found promising. Another method, based on the inoculation of foliated terminal shoots with zoospore suspensions, was found to be repeatable and could be used for high‐throughput analyses. Altogether, the results show a continuous resistance response from highly susceptible to moderately resistant genotypes. This suggests that breeding might be a useful strategy to manage alder decline caused by P. ×alni.     

Components of different signalling pathways regulated by a new orthologue of AtPROPEP1 in tomato following infection by pathogens

Plants express different defence mechanisms in response to pathogens. Understanding the recognition of pathogen‐associated molecular patterns (PAMPs) by specific receptors, and the role of endogenous signals such as AtPep1 that regulate expression of genes in Arabidopsis thaliana, has aided the understanding of the defence mechanisms in different species. The aim of this study was to identify possible orthologous sequences of AtPROPEPs in tomato (Solanum lycopersicum) and characterize its role in resistance to necrotrophic pathogens. The presence of an orthologue of the A. thaliana AtPROPEP1 gene in S. lycopersicum, SlPROPEP, by in silico analysis, is reported here. This has 96% identity with the C‐terminal region of a previously described potato peptide, another possible orthologue of AtPep1. A virus‐induced gene silencing (VIGS) system was employed to investigate the role of the SlPROPEP. Silencing of SlPROPEP in tomato made plants more susceptible to Pythium dissotocum; approximately 30% of SlPROPEP‐silenced plants showed stem constriction compared with 4% in control plants. Furthermore, quantification of P. dissotocum by qPCR revealed that the increase in symptom severity in SlPROPEP‐silenced plants was associated with a 15 times increase in growth of the pathogen compared to control plants. Silencing of SlPROPEP also resulted in decreased expression of genes involved in plant defence against pathogens, such as PR‐1, PR‐5, ERF1, LOX‐D and DEF2. These results suggest that SlPROPEP is involved in tomato resistance to P. dissotocum and probably acts as a pathogen‐associated molecular pattern through signalling pathways mediated by jasmonic acid/ethylene (JA/ET).     

Fates of Setaria faberi and Abutilon theophrasti seeds in three crop rotation systems

Weed seeds in and on the soil are the primary cause of weed infestations in arable fields. Previous studies have documented reductions in weed seedbanks due to cropping system diversification through extended rotation sequences, but the impacts of different rotation systems on additions to and losses from weed seedbanks remain poorly understood. We conducted an experiment in Iowa, USA, to determine the fates of Setaria faberi and Abutilon theophrasti seeds in 2‐, 3‐ and 4‐year crop rotation systems when seed additions to the soil seedbank were restricted to a single pulse at the initiation of the study. Over the course of the experiment, seedlings were removed as they emerged and prevented from producing new seeds. After 41 months, seed population densities dropped >85% for S. faberi and >65% for A. theophrasti, but differences between rotation systems in the magnitude of seedbank reductions were not detected. Most of the reductions in seedbank densities took place from autumn through early spring in the first 5 months following seed deposition, before seedling emergence occurred, suggesting that seed predation and/or seed decay was important. For S. faberi, total cumulative seedling emergence and total seed mortality did not differ between rotation systems. In contrast, for A. theophrasti, seedling emergence was 71% lower and seed mortality was 83% greater in the 3‐ and 4‐year rotation systems than in the 2‐year system. Results of this study indicate that for certain weed species, such as A. theophrasti, crop rotation systems can strongly affect life‐history processes associated with soil seedbanks.     

Glyphosate sustainability in South American cropping systems

South America represents about 12% of the global land area, and Brazil roughly corresponds to 47% of that. The major sustainable agricultural system in South America is based on a no-tillage cropping system, which is a worldwide adopted agricultural conservation system. Societal benefits of conservation systems in agriculture include greater use of conservation tillage, which reduces soil erosion and associated loading of pesticides, nutrients and sediments into the environment. However, overreliance on glyphosate and simpler cropping systems has resulted in the selection of tolerant weed species through weed shifts (WSs) and evolution of herbicide-resistant weed (HRW) biotypes to glyphosate. It is a challenge in South America to design herbicide- and non-herbicide-based strategies that effectively delay and/or manage evolution of HRWs and WSs to weeds tolerant to glyphosate in cropping systems based on recurrent glyphosate application, such as those used with glyphosate-resistant soybeans. The objectives of this paper are (i) to provide an overview of some factors that influence WSs and HRWs to glyphosate in South America, especially in Brazil, Argentina and Paraguay soybean cropped areas; (ii) to discuss the viability of using crop rotation and/or cover crops that might be integrated with forage crops in an economically and environmentally sustainable system; and (iii) to summarize the results of a survey of the perceptions of Brazilian farmers to problems with WSs and HRWs to glyphosate, and the level of adoption of good agricultural practices in order to prevent or manage it.     

Genetic analysis of resistance to Pyrenophora tritici-repentis races 1 and 5 in tetraploid and hexaploid wheat

Tan spot of wheat, caused by the fungus Pyrenophora tritici-repentis, is a destructive disease worldwide that can lead to serious losses in quality and quantity of wheat grain production. Resistance to multiple races of P. tritici-repentis was identified in a wide range of genetically diverse genotypes, including three different species Triticum aestivum (AABBDD), T. spelta (AABBDD), and T. turgidum (AABB). The major objectives of this study were to determine the genetic control of resistance to P. tritici-repentis races 1 and 5 in 12 newly identified sources of resistance. The parents, F(1), F(2), and F(2:3) or F(2:5) families of each cross were analyzed for the allelism tests and/or inheritance studies. Plants were inoculated at the two-leaf stage under controlled environmental conditions and disease reaction was assessed based on lesion-type rating scale. A single recessive gene controlled resistance to necrosis caused by P. tritici-repentis race 1 in both tetraploid and hexaploid resistant genotypes. The lack of segregation in the inter- and intra-specific crosses between the resistant tetraploid and hexaploid genotypes indicated that they possess the same genes for resistance to tan necrosis and chlorosis induced by P. tritici-repentis race 1. A single dominant gene for chlorosis in hexaploid wheat and a single recessive gene for necrosis in tetraploid wheat, controlled resistance to P. tritici-repentis race 5.     

Genotypic diversity and migration of clonal lineages of Botrytis cinerea from chickpea fields of Bangladesh inferred by microsatellite markers

An analysis of allelic diversity at nine microsatellite loci provided an insight into the population structure of Botrytis cinerea from four fields (sampled in 2003 and 2004) that represented important regional locations for chickpea production in Bangladesh. Although three populations were limited by sample size after clone‐correction, a total of 51 alleles were amplified among 146 B. cinerea isolates from Bangladesh, which revealed a high amount of within‐population and overall genetic diversity (H_S = 0·48 and H_T = 0·54, respectively). The percentage of maximal genotypic diversity (G) ranged between populations (G = 23–40), with a total of 69 haplotypes detected (G = 25). Bayesian cluster analysis depicted two major clusters distributed among the four Bangladesh populations, indicating population admixture from two origins that have spread throughout these regions. Genotype flow between regions was detected and indicated the spread of clonal lineages, consistent with relatively low differentiation among the four populations (mean G_ST = 0·1, P < 0·05). These results highlighted the potential threat of host resistance breakdown as a result of considerable genetic diversity, genotype flow and the evolutionary potential of B. cinerea.     

Resistance to pyraclostrobin, boscalid and multiple resistance to Pristine® (pyraclostrobin + boscalid) fungicide in Alternaria alternata causing alternaria late blight of pistachios in California

Pristine® (pyraclostrobin + boscalid) is a fungicide registered for the control of alternaria late blight in pistachio. A total of 95 isolates of Alternaria alternata collected from orchards with and without a prior history of Pristine® sprays were tested for their sensitivity towards pyraclostrobin, boscalid and Pristine® in conidial germination assays. The EC₅₀ values for 35 isolates from orchards without Pristine® sprays ranged from 0·09 to 3·14 µg mL^?1 and < 0·01 to 2·04 µg mL^?1 for boscalid and Pristine®, respectively. For pyraclostrobin, 27 isolates had EC₅₀ < 0·01 µg mL^?1 and six had low resistance (mean EC₅₀ value = 4·71 µg mL^?1). Only one isolate was resistant to all three fungicides tested, with EC₅₀ > 100 µg mL^?1. Among 59 isolates from the orchard with a history of Pristine® sprays, 56 were resistant to pyraclostrobin; only two were sensitive (EC₅₀ < 0·01 µg mL^?1) and one was weakly resistant (EC₅₀ = 10 µg mL^?1). For the majority of these isolates EC₅₀ values ranged from 0·06 to 4·22 µg mL^?1 for boscalid and from 0·22 to 7·74 µg mL^?1 for Pristine®. However, seven isolates resistant to pyraclostrobin were also highly resistant to boscalid and Pristine® and remained pathogenic on pistachio treated with Pristine®. Whereas strobilurin resistance is a common occurrence in Alternaria of pistachio, this is the first report of resistance to boscalid in field isolates of phytopathogenic fungi. No cross resistance between pyraclostrobin and boscalid was detected, suggesting that Pristine® resistance appears as a case of multiple resistance.     

Dynamics of soilborne Rhizoctonia solani in the presence of Trichoderma harzianum: effects on stem canker, black scurf and progeny tubers of potato

Stem canker and black scurf are diseases of potato caused by the fungus Rhizoctonia solani . Spatiotemporal experimentation and empirical modelling were applied for the first time to investigate the effect of antagonistic Trichoderma harzianum on the dynamics of soilborne R. solani on individual potato plants. Trichoderma harzianum reduced the severity of symptoms, expressed as 'rhizoctonia stem lesion index' (RSI), during the first 7 days post-inoculation when the inoculum of R. solani was placed at certain distances (30–60 mm) from the host. For example, with inoculum at 40 mm from the host, RSI was 6 and 40 with and without T. harzianum , respectively. At later observation times, the antagonistic effect was overcome. Trichoderma harzianum reduced the severity of black scurf on progeny tubers. Furthermore, the mean number of progeny tubers per potato plant was reduced by the biocontrol treatment (means of 6·5 ± 1·1 and 9·9 ± 2·7 tubers per plant with and without T. harzianum , respectively), as was the proportion of small (0·1–20·0 g) tubers (48% and 66% with and without T. harzianum , respectively). Additionally, there were fewer malformed and green-coloured tubers in pots treated with T. harzianum than in those without T. harzianum .