Pathogenomic analyses of Puccinia striiformis f. sp. tritici supports a close genetic relationship between South and East Africa

Wheat stripe rust, caused by the fungal pathogen Puccinia striiformis f. sp. tritici (Pst), occurs in all major wheat-growing regions worldwide and poses a constant threat to production. In South Africa, Pst first emerged in 1996 in the Western Cape and has since caused frequent epidemics with three further distinct races (pathotypes) recorded to date. Herein, we undertook detailed genomic-based analyses of four Pst isolates that represent the four dominant Pst races in South Africa recorded between 1996 and 2005. This analysis identified a number of polymorphic genes with features of known effector proteins and provided additional support of the likely stepwise changes in virulence profile of these South African Pst isolates. Next, we carried out comparative genomic-based analyses with 54 additional Pst isolates collected across wheat-growing regions within South Africa between 1996 and 2017 and 58 Pst isolates from East Africa, Pakistan, the UK, and France. This revealed a close genetic relationship between Pst isolates in South Africa and a number from East Africa. Furthermore, we found the South African Pst isolates also grouped closely with isolates identified in the UK in 2013 that were specifically found on triticale, illustrating long-distance transmission of Pst isolates either between these regions or from a common independent source area. This highlights the critical need for close monitoring of Pst. With wheat being the most planted winter cereal crop in South Africa, investment in continuous surveillance is essential to rapidly identify any future introductions that could quickly lead to rust epidemics.     

Revisiting carbon flux through the ocean's twilight zone

The oceanic biological pump drives sequestration of carbon dioxide in the deep sea via sinking particles. Rapid biological consumption and remineralization of carbon in the "twilight zone" (depths between the euphotic zone and 1000 meters) reduce the efficiency of sequestration. By using neutrally buoyant sediment traps to sample this chronically understudied realm, we measured a transfer efficiency of sinking particulate organic carbon between 150 and 500 meters of 20 and 50% at two contrasting sites. This large variability in transfer efficiency is poorly represented in biogeochemical models. If applied globally, this is equivalent to a difference in carbon sequestration of more than 3 petagrams of carbon per year.     

Estimates of Bottom Soil and Effluent Load of Phosphorus at a Semi-intensive Marine Shrimp Farm

A phosphorus budget for a single crop was prepared for a 685‐ha semi‐intensive shrimp farm that consistently has produced about 3000 tonnes/yr of black tiger prawn, Penaeus monodon. Phosphorus inputs were shrimp stock, 0.31 kg/ha; triple superphosphate, 1.38 kg/ha; incoming water, 25.8 kg/ha; and feed, 65.3 kg/ha. Phosphorus outputs were harvested shrimp, 5.43 kg/ha, and outflow for water exchange and draining, 42.7 kg/ha. The high clay‐content soil in pond bottoms adsorbed 45.2 kg/ha of phosphorus. Water was taken from and released back into the same estuary and bay. The phosphorus contribution of shrimp farming to the receiving water body was the difference between the amount of phosphorus in effluent and that in the incoming water, which was 16.9 kg/ha. Bottom soil accumulated 67.8% of phosphorus added to the ponds. Another estimate of soil phosphorus uptake based on the relationship between cumulative phosphorus applied to ponds as fertilizer and feed and soil phosphorus concentration suggested that 63.2% of fertilizer and feed phosphorus had accumulated in pond bottoms. The farm effluent phosphorus load was 23.5 tonnes/yr. The estuary and bay system has an estimated volume of 4.8 × 10⁹ m³, and the annual phosphorus input from the farm had a concentration equivalent of 0.005 mg/L, and there were no other major inputs of phosphorus. The estuary and bay are flushed by freshwater inflow and tidal action, and the farm input is not likely to cause eutrophication.     

Physical and chemical characteristics of soil from tiger shrimp aquaculture ponds at Malacca,Malaysia

Soil physicochemical properties of the growout ponds of black tiger shrimp (Penaeus monodon) were examined in relation to shrimp yields for one production cycle. The culture ponds were old (>5 years) and new (newly constructed) types. Soil texture was silty clay with low sand content and high proportion of clay for both the pond types with alkaline soil pH (7.87–9.71). Organic matter (OM) concentration was higher (7.48 ± 0.01%) in old ponds and positively related (r = 0.58, P < 0.05) with total nitrogen (TN). The major cations (Ca, Mg, and Na) were higher in the soil of old ponds and did not fluctuate significantly during culture. The majority of trace elements, i.e., Fe (349.22 ± 35.7 ppm), Mn (56.19 ± 30.2 ppm), Zn (88.56 ± 8.09 ppm), Al (454.3 ± 200.6), Pb (1.3 ± 0.96 ppm), Co (3.4 ± 0.2), V (6.56 ± 1.79 ppm), Cr (19.32 ± 0.63 ppm), Ti (82.78 ± 54.3 ppm), As (5.60 ± 0.28 ppm), Ag (0.38 ± 0.5 ppm), and Sb (3.89 ± 0.48 ppm) were found to be higher in new pond soils than the old ponds. Except for soil manganese, no major fluctuations in trace elements were observed during the culture period. Shrimp growth was not significantly different in the two types of ponds, and no distinct correlation between shrimp growth and element content of soils could be drawn. The results indicate that shrimp pond age may not affect production of shrimp if soils are properly managed pre- and postculture. The differences in production in different ponds might be the result of management practice such as quality of shrimp post larvae, pond preparation, water and feed quality, and available live feed in the pond bottom or other environmental factors like water nutrients and physicochemical parameters.     

Effect of leukoreduction on inflammation in critically ill dogs receiving red blood cell transfusions: A randomized blinded controlled clinical trial

BackgroundPrestorage leukoreduction of red blood cell (RBC) bags prevents accumulation of pro‐inflammatory mediators and experimentally attenuates post‐transfusion inflammation in healthy dogs. However, the effect of leukoreduction on post‐transfusion inflammation in critically ill dogs is unclear.HypothesisDogs transfused with leukoreduced (LR) RBC will have lower concentrations of leukocytes, interleukin (IL)‐6, IL‐8, monocyte chemoattractant protein‐1 (MCP‐1), and C‐reactive protein (CRP) within 24 hours of post‐transfusion compared to dogs transfused with nonleukoreduced (NLR) RBC.AnimalsSixty‐one RBC‐transfused dogs (LR = 34, NLR = 27).MethodsRandomized, blinded, controlled preliminary clinical trial. Blood bag processing was randomized to create identically appearing LR and NLR bags. Group allocation occurred with transfusion of the oldest compatible RBC bag. Blood samples were collected pretransfusion and at 8 and 24 hours post‐transfusion for leukocyte count, IL‐6, IL‐8, MCP‐1, and CRP. Data were analyzed on an intention‐to‐treat basis using linear mixed effects models. Significance was set at P < .05.ResultsNo significant differences were found between groups in concentrations of leukocytes (P = .93), IL‐6 (P = .99), IL‐8 (P = .75), MCP‐1 (P = .69), or CRP (P = .18) over time. Eleven LR dogs (32%) and 4 NLR dogs (15%) were euthanized in the hospital (P = .14). No natural deaths occurred.Conclusions and Clinical ImportanceNo differences in inflammation biomarker concentrations were detected over time between dogs transfused with LR or NLR RBC, but heterogeneity likely hampered the ability to detect a difference with this sample size. The novel randomization and enrollment protocol was successfully implemented across 2 participating institutions and will be easily scaled up for a future multicenter clinical trial.