The inhibiting effect of nitrate fertilisation on methane uptake of a temperate forest soil is influenced by labile carbon

Upland soils are the most important terrestrial sink for the greenhouse gas CH₄. The oxidation of CH₄ is highly influenced by reactive N which is increasingly added to many ecosystems by atmospheric deposition and thereby also alters the labile C pool in the soils. The interacting effects of soil N availability and the labile C pool on CH₄ oxidation are not well understood. We conducted a laboratory experiment with soil columns consisting of homogenised topsoil material from a temperate broad-leaved forest to study the net CH₄ flux under the combined or isolated addition of NO ₃ ^? and glucose as a labile C source. Addition of NO ₃ ^? and glucose reduced the net CH₄ uptake of the soil by 86% and 83%, respectively. The combined addition of both agents led to a nearly complete inhibition of CH₄ uptake (reduction by 99.4%). Our study demonstrates a close link between the availability of C and N and the rate of CH₄ oxidation in temperate forest soils. Continued deposition of NO ₃ ^? has the potential to reduce the sink strength of temperate forest soils for CH₄.     

Udder pathogens and their resistance to antimicrobial agents in dairy cows in Estonia

Background

The goal of this study was to estimate the distribution of udder pathogens and their antibiotic resistance in Estonia during the years 2007-2009.

Methods

The bacteriological findings reported in this study originate from quarter milk samples collected from cows on Estonian dairy farms that had clinical or subclinical mastitis. The samples were submitted by local veterinarians to the Estonian Veterinary and Food Laboratory during 2007-2009. Milk samples were examined by conventional bacteriology. In vitro antimicrobial susceptibility testing was performed with the disc diffusion test. Logistic regression with a random herd effect to control for clustering was used for statistical analysis.

Results

During the study period, 3058 clinical mastitis samples from 190 farms and 5146 subclinical mastitis samples from 274 farms were investigated. Positive results were found in 57% of the samples (4680 out of 8204), and the proportion did not differ according to year (p > 0.05). The proportion of bacteriologically negative samples was 22.3% and that of mixed growth was 20.6%. Streptococcus uberis (Str. uberis) was the bacterium isolated most frequently (18.4%) from cases of clinical mastitis, followed by Escherichia coli (E. coli) (15.9%) and Streptococcus agalactiae (Str. agalactiae) (11.9%). The bacteria that caused subclinical mastitis were mainly Staphylococcus aureus (S. aureus) (20%) and coagulase-negative staphylococci (CNS) (15.4%). The probability of isolating S. aureus from milk samples was significantly higher on farms that had fewer than 30 cows, when compared with farms that had more than 100 cows (p < 0.005). A significantly higher risk of Str. agalactiae infection was found on farms with more than 600 cows (p = 0.034) compared with smaller farms. The proportion of S. aureus and CNS isolates that were resistant to penicillin was 61.4% and 38.5%, respectively. Among the E. coli isolates, ampicillin, streptomycin and tetracycline resistance were observed in 24.3%, 15.6% and 13.5%, respectively.

Conclusions

This study showed that the main pathogens associated with clinical mastitis were Str. uberis and E. coli. Subclinical mastitis was caused mainly by S. aureus and CNS. The number of S. aureus and Str. agalactiae isolates depended on herd size. Antimicrobial resistance was highly prevalent, especially penicillin resistance in S. aureus and CNS.     

Impact of Waxy,Partial Waxy,and Wildtype Wheat Starch Fraction Properties on Hearth Bread Characteristics

Thirteen different wheat cultivars were selected to represent GBSS mutations: three each of wildtype, axnull, and bxnull, and two each of 2xnull and waxy. Starch and A‐ and B‐granules were purified from wheat flour. Hearth bread loaves were produced from the flours using a small‐scale baking method. A‐granules purified from wildtype and partial waxy (axnull, bxnull, and 2xnull) starches have significantly higher gelatinization enthalpy and peak viscosity compared with B‐granules. A‐ and B‐granules from waxy starch do not differ in gelatinization, pasting, and gelation properties. A‐ and B‐granules from waxy starch have the highest enthalpy, peak temperature, peak viscosity, breakdown, and lowest pasting peak time and pasting temperature compared with A‐ and B‐granules from partial waxy and wildtype starch. Waxy wheat flour has much higher water absorption compared with partial waxy and wildtype flour. No significant difference in hearth bread baking performance was observed between wildype and partial waxy wheat flour. Waxy wheat flour produced hearth bread with significantly lower form ratio, weight, a more open pore structure, and a bad overall appearance. Baking with waxy, partial waxy, and wildtype wheat flour had no significant effect on loaf volume.     

Photoinhibition, carotenoid composition and the co-regulation of photochemical and non-photochemical quenching in neotropical savanna trees

Plants in the neotropical savannas of central Brazil are exposed to high irradiances, high air temperatures and low relative humidities. These conditions impose a selection pressure on plants for strong stomatal regulation of transpiration to maintain water balance. Diurnal adjustments of non-photochemical energy dissipation in photosystem II (PSII) provide a dynamic mechanism to reduce the risk of photoinhibitory damage during the middle of the day when irradiances and leaf temperatures are high and partial closure of the stomata results in considerable reductions in internal CO(2) concentration. At the end of the dry season, we measured diurnal changes in gas exchange, chlorophyll fluorescence parameters and carotenoid composition in two savanna tree species differing in photosynthetic capacity and in the duration and extent of the midday depression of photosynthesis. Non-photochemical quenching and its quantum yield were tightly correlated with zeaxanthin concentrations on a total chlorophyll basis, indicating that the reversible de-epoxidation of violaxanthin to antheraxanthin and zeaxanthin within the xanthophyll cycle plays a key role in the regulation of thermal energy dissipation. In both cases, a single linear relationship fitted both species. Although efficient regulation of photochemical and non-photochemical quenching and adjustments in the partitioning of electron flow between assimilative and non-assimilative processes were operating, these trees could not fully cope with the rapid increase in irradiance after sunrise, suggesting high vulnerability to photoinhibitory damage in the morning. However, both species were able to recover quickly. The effects of photoinhibitory quenching were largely reversed by midday, and zeaxanthin rapidly converted back to violaxanthin as irradiance decreased in late afternoon, resulting in the maximal quantum yield of PSII of around 0.8 just before sunrise.     

Diagnosis of anatoxin-a poisoning in dogs from North America.

Anatoxin-a, a toxin produced by several genera of blue-green algae, is considered a potent neurotoxin. Ingestion of water contaminated with the toxin results in acute neurological signs and often death. This report describes fatal cases of anatoxin-a ingestion in 6 dogs, with confirmation of anatoxin-a exposure by liquid chromatography/tandem mass spectrometry (LC-MS/MS/MS). In 1 outbreak, 3 dogs developed seizures and died within an hour after swimming in a river in California, while the other outbreak involved 3 dogs that died within 1 hour after swimming in a pond in Ontario. Anatoxin-a poisoning is rarely reported in dogs as a cause of acute neurological signs and death. However, increased occurrences of blue-green algae blooms in North America make this neurotoxin an important consideration in the diagnosis of sudden death associated with environmental water exposure. This brief communication reports on the isolation and detection of anatoxin-a from environmental water sources and the stomach contents of North American dogs dying of acute neurotoxicosis. This demonstrates the first documented cases of anatoxin-a poisoning in dogs in North America and the importance of LC-MS/MS/MS in identifying neurotoxins responsible for sudden death in cases of suspected blue-green algae toxicosis; especially those cases showing no gross or histological lesions.     

Determination of alpha-amanitin in serum and liver by multistage linear ion trap mass spectrometry

This paper describes a rapid LC-MS/MS/MS method for the analysis of alpha-amanitin in serum and liver. Serum was initially prepared by precipitation of proteins with acetonitrile and subsequent removal of acetonitrile with methylene chloride. Liver was prepared by homogenization with aqueous acetonitrile and subsequent removal of acetonitrile using methylene chloride. For both matrices, the aqueous phase was then extracted using mixed-mode C18/cation exchange SPE cartridges and analyzed on a linear ion trap LC-MS system. Standards were prepared in extracts of control matrix. Seven replicate fortifications of serum at 0.001 mug/g (1 ng/g) of alpha-amanitin gave a mean recovery of 95% with 8.8% CV (relative standard deviation) and a calculated method detection limit of 0.26 ng/g. Seven replicates of control liver fortified at 1 ng/g gave a mean recovery of 98% with 17% CV and a calculated method detection limit of 0.50 ng/g. This is the first report of a positive mass spectrometric identification and quantitation of alpha-amanitin in serum and liver from suspect human and animal intoxications.