Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry"

Asara et al. (Reports, 13 April 2007, p. 280) reported sequencing of Tyrannosaurus rex proteins and used them to establish the evolutionary relationships between birds and dinosaurs. We argue that the reported T. rex peptides may represent statistical artifacts and call for complete data release to enable experimental and computational verification of their findings.     

Expression of transforming growth factor-beta 1 (TGF-beta1) in different types of granulomatous lesions in bovine and ovine paratuberculosis

Paratuberculosis, caused by Mycobacterium avium subsp. paratuberculosis (Map), is manifested by a broad spectrum of clinical and lesional presentations. We have evaluated the expression of transforming growth factor-beta1 (TGF-beta1), a cytokine known to have immunosuppressor effects, by immunohistochemistry, in different paratuberculosis lesions in the intestine and lymph nodes from 20 sheep and 25 cattle. Peripheral immune responses were assessed by interferon-gamma (IFN-gamma) test and the presence of antibodies. Expression of TGF-beta1, observed in macrophages and giant cells forming the lesions, was closely related to the amount of Map. In focal and multifocal forms, usually positive to IFN-gamma test, bacilli were difficult to detect and TGF-beta1 expression was low or absent. Diffuse multibacillary lesions, negative to IFN-gamma, show large numbers of Map and the highest percentage of immunolabelled cells. Diffuse paucibacillary forms, positive to IFN-gamma, have low numbers of AFB and scant or no cells positive to TGF-beta1. The high expression of TGF-beta1 would be related to the inability of macrophages to limit the multiplication of Map.     

Cytoprotective effect of hydroxytyrosyl alkyl ether derivatives after oral administration to rats in a model of glucose-oxygen deprivation in brain slices

This study was designed to determine whether the oral administration of hydroxytyrosol (HT) alkyl ether derivatives has a neuroprotective effect in rats. The animals were treated for 7 days with HT or ethyl, butyl, hexyl, octyl, and dodecyl HT ether. A method of in vitro hypoxia-reoxygenation in brain slices was used. Hexyl, octyl, and dodecyl HT derivatives reduced brain cell death (LDH efflux). Lipid peroxidation and nitrite concentrations were inhibited most by hexyl, octyl, and dodecyl derivatives. Concentrations of 3-nitrotyrosine were reduced by HT butyl, hexyl, octyl, and dodecyl ether derivatives. Interleukin-1β was significantly reduced in brain slices from rats treated with all HT ether derivatives. LDH efflux showed a linear correlation with brain concentrations of lipid peroxides, nitrites plus nitrates, and interleukin 1β. The reduction in oxidative and nitrosative stress and decreased production of pro-inflammatory interleukins may be the basis for the observed neuroprotective effects.     

Bound malondialdehyde in foods: bioavailability of the N-2-propenals of lysine

The lipid peroxidation product malondialdehyde is mostly bound to proteins in foods as an N-2-propenal derivative that is released as N-epsilon-(2-propenal)lysine by digestive enzymes. N-2-Propenals have been identified as the major forms of malondialdehyde in urine. To determine whether available lysine can be released from the N-2-propenals of lysine in vivo, two preparations containing N-epsilon-(2-propenal)lysine and N-alpha-(2-propenal)lysine or N,N'-di-(2-propenal)lysine were synthesized using radioactively labeled lysine and were administered to rats by gastric intubation and intraperitoneal injection. Both preparations were absorbed from the digestive tract, although not as efficiently as free lysine, but most of the radioactivity was excreted in urine. The radioactive label was also readily excreted after intraperitoneal injection. It is concluded that the N-2-propenals of lysine are fairly stable in vivo, so that, although they are absorbed from the gut, most of the absorbed material is not metabolized and is readily excreted as nonavailable lysine.     

Growth of Brazilian Cotton Cultivars in Response to Soil Applied Boron

ABSTRACT

The growth of cotton (Gossypium hirsutum L.) was evaluated in a 6 × 5 factorial experiment with 6 boron (B) levels (0.0, 0.5, 1.0, 1.5, 2.0, and 3.0 mg dm^?3), 5 cultivars (‘CNPA 8H’, ‘BRS Aroeira’, ‘BRS Antares’, ‘BRS Sucupira’, ‘BRS Ipe’), and 3 replications. As B increased in the soil, leaf B concentrations increased linearly in ‘BRS Aroeira’ and ‘CNPA 8H’, and quadratically in ‘BRS Ipe’ and ‘BRS Sucupira’. The concentrations of B in the leaves and in the soil increased with the B increasing in the soil. The agronomic characteristics evaluated showed ‘BRS Aroeira’ and ‘BRS Sucupira’ responding more and BRS responding less to the B doses applied. The variation in the effFiciency of B utilization was: ‘BRS Aroeira’ > ‘CNPA 8H’ = ‘BRS Antares’ > ‘BRS Sucupira’ > ‘BRS Ipe’. Cultivar ‘BRS Aroeira’ had the greatest potential to respond positively to the addition of B to the soil.     

Quantitative variations in the essential oil of Minthostachys mollis (Kunth.) Griseb. in response to insects with different feeding habits

Plants display a diverse array of inducible changes in secondary metabolites following insect herbivory. Herbivores differ in their feeding behavior, physiology, and mode of attachment to the leaf surface, and such variations might be reflected in the induced responses of damaged plants. Induced changes were analyzed for Minthostachys mollis, a Lamiaceae with medicinal and aromatic uses, and four species of folivore insects with different feeding habits (chewing, scraping, sap-sucking, and puncturing). In M. mollis leaves experimentally exposed to the insects, levels of the two dominant monoterpenes pulegone and menthone were assessed 24 and 48 h after wounding. Menthone content generally decreased in the essential oil of damaged leaves, whereas pulegone concentration increased in all treatments. These changes occurred also in the adjacent undamaged leaves, suggesting a systemic response. The relatively uniform response to different kinds of damage could be attributable to the presence of such a strongly active compound as pulegone in the essential oil of M. mollis. The effects of wounding on essential oil concentration may be significant from a commercial point of view.     

Oil quality and sugar content of peanuts (Arachis hypogaea) grown in Argentina: their relationship with climatic variables and seed yield

The ratio of oleic to linoleic acids (O/L) and the tocopherol content are important features in determining peanut (Arachis hypogaea) seed shelf life. Soluble carbohydrates are known to be important precursors in roasted peanut flavor. The chemical qualities of Argentine grain are different from those of other countries, but no previous studies that associate grain quality and environmental parameters have been performed. Relationships were determined between O/L, tocopherol and sugar contents, and variations in temperature and rainfall during the grain filling period of Florman INTA peanuts. Dry seed yield was used as another explanatory variable. Multiple regression procedure gave mean temperature (positive coefficient) and total precipitation (negative coefficient) as the explanatory variables for variations in O/L. Total precipitation and dry seed yield (both negative coefficients) were found to be predictor variables for tocopherol and sugar contents. Total precipitation was an explanatory variable included in all of the linear regression models obtained in this study.     

Honey characterization and adulteration detection by pattern recognition applied on HPAEC-PAD profiles. 1. Honey floral species characterization

An improved COFRAC (COmité FRan?ais d'ACréditation) method for the analysis and evaluation of the quality of honey by high-performance anion-exchange chromatography of sugar profiles is proposed. With this method, both minor and major sugars are simultaneously analyzed and the technique is integrated in a new chemometric approach, which uses the entire chromatographic sugars profile of each analyzed sample to characterize honey floral species. Sixty-eight authentic honey samples (6 varieties) were analyzed by high-performance anion-exchange chromatography-pulsed amperometric detection. A new algorithm was developed to create automatically the corresponding normalized data matrix, ready-to-use in various chemometric procedures. This algorithm transforms the analytical profiles to produce the corresponding calibrated table of the surfaces or intensities according to retention times of peaks. The possibility of taking into account unknown peaks (those for which no standards are available) allows the maximum chemical information provided by the chromatograms to be retained. The parallel application of principal component analysis (PCA)/linear discriminant analysis (LDA) and artificial neural networks (ANN) shows a high capability in the classification of the analyzed samples (LDA, 93%; ANN, 100%) and a very good discrimination of honey groups. This work is the starting point of the elaboration of a new system designed for the automatic pattern recognition of food samples (first application on honey samples) from chromatographic analyses for food characterization and adulteration detection.