Parent‐of‐origin effects on carcass traits in Japanese Black cattle

Variances caused by the differential expression of paternally and maternally imprinted genes controlling carcass traits in Japanese Black cattle were estimated in this study. Data on marbling score (BMS), carcass weight, rib thickness, rib‐eye area (REA) and subcutaneous fat thickness (SFT) were collected from a total of 13,115 feedlot steers and heifers in a commercial population. A sire–maternal grandsire model was used to analyse the data, and then, imprinting parameters were derived by replacing the genetic effect of the dam with the effect of the maternal grandsire in the imprinting model to calculate the genetic parameter estimates. The proportions of the total genetic variance attributable to imprinted genes ranged from 8.7% (SFT) to 35.2% (BMS). The remarkably large imprinting variance of BMS was mainly contributed by maternally expressed inheritance because the maternal contribution of the trait was much larger than that of the paternal trait. The parent‐of‐origin effect originating from maternal gene expression was also observed for REA. The results suggested the existence of genomic imprinting effects on the traits of the Japanese Black cattle. Hence, the parent‐of‐origin effect should be considered for the genetic evaluation of Japanese Black cattle in breeding programmes.     

Characteristics of a self-assembled fibrillar gel prepared from red stingray collagen

A translucent collagen gel was formed from a transparent acidic solution of red stingray collagen by adjusting to physiological ionic strength and pH in phosphate buffer and then incubating at 25–37°C. During fibril formation from red stingray collagen, the turbidity increased when the NaCl concentration was increased at constant pH and the rate of fibril formation was accelerated by higher pH or lower NaCl concentration. The T _m of red stingray collagen fibrillar gel was estimated as 44.3 ± 3.5°C, which was higher than that of the collagen solution, 33.2°C. In addition, red stingray collagen gel maintained its shape without melting and was suitable for culture of mouse stromal cells at 37°C.     

Effects of tightening speed on torque coefficient in lag screw timber joints with steel side plates

To investigate the effects of tightening speed on the torque coefficient in lag screw timber joints with steel side plates, tightening tests were conducted on main timber members made from Cryptomeria japonica, Chamaecyparis obtusa and Pseudotsuga menziesii, under four tightening speed conditions (1, 4, 10, and 20 rpm). Major stick-slip behavior was observed in C. obtusa based on the relationship of tightening angle with clamp force, tightening torque, and thread torque at tightening speeds of 1 and 4 rpm. In addition, tightening speed’s effects on the torque coefficient (K) varied depending on the wood species of the main member. In P. menziesii, K was not affected by the tightening speed: the ratio of torque expended on tightening was 25% on average, and the ratio of torque expended on bearing surface friction was higher than the ratio of torque expended on thread friction.     

Is it necessary to change the number of samples for different forest types when evaluating plant species richness? A case study in a forested landscape in central Japan

We demonstrate a method for evaluating the appropriate number of samples required to estimate plant species richness in different forest types within a forested landscape. In each of 36 plots (0.1 ha each) from 5 forest types (deciduous broad-leaved secondary forest and 4 categories of coniferous plantation classified according to stand age) in central Japan, 40 quadrats of 1 × 1 m were set in a regular pattern; the total number of quadrats in each forest type ranged from 200 to 400. In each plot, the number of observed species in 40 quadrats ranged from 60 to 80% of the number of species estimated by the rarefaction method for each forest type. Sampling 30 quadrats detected approximately 90% of the observed species in each plot that were detected using 40 quadrats. In specific functional groups (i.e., tall trees and weed species), the ratios of both tall trees and weed species to all species were at equilibrium for 30 or more quadrats. For fewer than 30 quadrats these ratios were highly variable. No significant differences were found among forest types in the ratio of the observed number of species in each plot to the estimated number of species calculated using the rarefaction method, and in sampling efficiency estimated by use of non-parametric estimators. We concluded that the number of samples does not need to be changed according to forest type or plantation stand age in the studied landscape, and that the method used to evaluate the number of samples could be useful.     

Glomerular lipidosis accompanied by renal tubular oxalosis in wild and laboratory-reared Japanese rock ptarmigans (Lagopus mutus japonicus)

Glomerular lipidosis is a disease characterized by lipid accumulation in mesangial cells but that has not been fully investigated in avian species. We examined four wild and two laboratory-reared Japanese rock ptarmigans (Lagopus mutus japonicus)--an endangered avian species--presenting vacuolar deposits in the glomeruli. All cases had vacuolar deposits in the glomeruli. In the wild cases, fewer than 30% of all glomeruli were affected, compared with more than 90% in the laboratory-reared cases. In the wild cases, most deposits were mild and restricted to the mesangial areas of glomeruli. In the laboratory-reared cases, nearly all of the deposits covered entire glomeruli. Electron microscopy of mild deposits revealed vacuoles in the cytoplasm of mesangial cells. These vacuoles were positive for Sudan III, Sudan black B, oil red O, Nile blue, periodic acid-Schiff, Schultz test, and digitonin stain and were negative for performaric acid-Schiff stains. Based on these results, we diagnosed the glomerular lesion as glomerular lipidosis caused by uptake of low-density lipoprotein in mesangial cells. Except for one wild case, all cases exhibited renal tubular oxalosis. The severity of tubular oxalosis tended to be related to the severity of glomerular lipidosis: In cases of mild glomerular lipidosis, tubular oxalosis was also mild or absent. We therefore diagnosed the primary lesion as glomerular lipidosis accompanied by tubular oxalosis. The four wild cases came from different zones and therefore had no opportunities to interbreed and no common relatives. We believe these data support the hypothesis that glomerular lipidosis is a disease of the general population ofJapanese rock ptarmigans. This is the first report of glomerular lipidosis accompanied by renal tubular oxalosis in an avian species.     

Photoinhibition, carotenoid composition and the co-regulation of photochemical and non-photochemical quenching in neotropical savanna trees

Plants in the neotropical savannas of central Brazil are exposed to high irradiances, high air temperatures and low relative humidities. These conditions impose a selection pressure on plants for strong stomatal regulation of transpiration to maintain water balance. Diurnal adjustments of non-photochemical energy dissipation in photosystem II (PSII) provide a dynamic mechanism to reduce the risk of photoinhibitory damage during the middle of the day when irradiances and leaf temperatures are high and partial closure of the stomata results in considerable reductions in internal CO(2) concentration. At the end of the dry season, we measured diurnal changes in gas exchange, chlorophyll fluorescence parameters and carotenoid composition in two savanna tree species differing in photosynthetic capacity and in the duration and extent of the midday depression of photosynthesis. Non-photochemical quenching and its quantum yield were tightly correlated with zeaxanthin concentrations on a total chlorophyll basis, indicating that the reversible de-epoxidation of violaxanthin to antheraxanthin and zeaxanthin within the xanthophyll cycle plays a key role in the regulation of thermal energy dissipation. In both cases, a single linear relationship fitted both species. Although efficient regulation of photochemical and non-photochemical quenching and adjustments in the partitioning of electron flow between assimilative and non-assimilative processes were operating, these trees could not fully cope with the rapid increase in irradiance after sunrise, suggesting high vulnerability to photoinhibitory damage in the morning. However, both species were able to recover quickly. The effects of photoinhibitory quenching were largely reversed by midday, and zeaxanthin rapidly converted back to violaxanthin as irradiance decreased in late afternoon, resulting in the maximal quantum yield of PSII of around 0.8 just before sunrise.