Endemic sheep scab: risk factors and the behaviour of upland sheep flocks

Since the deregulation of sheep scab in 1992, the number of scab outbreaks per year in the UK has increased rapidly; there has been an estimated 60-fold increase in outbreak incidence between 1992 and 2007. How best to focus management or eradication efforts has therefore been an issue of ongoing debate. Previous work has shown that scab outbreaks occur repeatedly on some farms whereas others never or rarely experience outbreaks. Here, to consider why this pattern occurs, and to quantify the risk of scab associated with different husbandry practices, face-to-face interviews with farmers at 16, randomly selected, repeat-outbreak farms and 16 matched farms with no or little history of scab over the previous 10 years, were used to identify associated risk factors. This showed that farms using common grazing were at significantly higher risk of infestation than farms not using common grazing, as were farms that had direct contact with neighbours' sheep and that had neighbours with scab. To further demonstrate the risk of common grazing, a survey of sheep on one common in south Wales showed that there was significant mixing of sheep from three farms, highlighting the potential for scab transmission between flocks. Common grazing, associated with upland regions, would appear to be the largest single obstacle to effective national scab control in the UK. The results suggest that a cost-effective approach to scab control may be to consider upland and lowland farms as separate epidemiological systems, with upland regions requiring a co-ordinated, systematic approach to achieve any significant management of the problem. In contrast, on lowland farms outbreaks are already largely contained effectively through good biosecurity and treated on a case-by-case basis if they occur.     

Effect of removal of logging residue on nutrient leaching and nutrient pools in the soil after clearcutting in a Norway spruce stand

Following clearcutting applying the conventional stem-only harvesting method in a Norway spruce (Picea abies (L.) Karst.) stand and different levels of removal of logging residue, the nutrient fluxes from the heaps of logging residue and from the O horizon were monitored over four growing seasons and the soil nutrient pools were determined. Three levels of removal of logging residue were carried out using (i) conventional stem-only harvesting (no residues removed); (ii) residues removed; and (iii) removal of branches (foliage left on site). The heaps of logging residue were a minor source of inorganic N entering the soil in the water percolating through the heaps, but they were a significant source of organic N, P, Ca, Mg, and especially K. Nutrient fluxes from the O horizon were in general greater under the heaps of logging residue as compared to soils without overlying logging residue. The leaching of inorganic N from the O horizon under the heaps of logging residue resulted in a net loss of these compounds, while the O horizon without overlying logging residue gained N. The removal of logging residue significantly decreased the extractable K pools in the soil while it or conversely, the presence of residue heaps had no significant effect on the pools of organic matter and the pools of N, P, Ca, and Mg in the O horizon and in the 0–10 cm soil layer. The results show that the short-term effects of logging residue on nutrient dynamics in the soil can be complex and difficult to interpret in terms of site productivity as there are changes in the nutrient fluxes, which imply the opposite effects on site productivity. However, the results do indicate that, in the short-term, the removal of logging residue does not impair pools of N in the soil nor site productivity on sites where the availability of N limits productivity.     

The role of germination microsite in the establishment of sugar pine and Jeffrey pine seedlings

Mature shrubs can provide microhabitats that are beneficial to tree seedling growth and development. Sugar pine trees (Pinus lambertiana) grow in a narrow zone on the eastern slope of the Carson Range in extreme western Nevada, whereas Jeffrey pine (Pinus jeffreyi) is the dominant tree species in the region, an area extensively disturbed by wild fire. This study compares seedling establishment of sugar pine and Jeffrey pine relative to mature shrubs. In the fall of 2002 (cohort 1) and 2003 (cohort 2), 13,600 seeds of both species were planted in wire mesh enclosures, at three sites, under a variety of microhabitat treatments: under shade and in the open, under two species of shrub cover, and with and without plant litter. Seedlings were monitored for survival through two growing seasons. Even though more sugar pine seedlings emerged, more Jeffrey pine seedlings survived, and Jeffrey pine was the more drought tolerant species, better suited for the xeric climate found in the Carson Range. Litter slightly hindered seedling emergence but had no effect on survival and there was no significant species × litter interaction. Supplemental water facilitated survival in all treatments with highest survival in shade treatments. Sugar pine seedlings showed a significant increase in survival over Jeffrey pine seedlings with the addition of water, particularly in open treatments and more of both species survived under manzanita shrubs with water. The highest seedling mortality occurred when shrub canopy was removed, and seedlings experienced the effect of full sun and competition for soil water. For either species, microhabitat is a significant factor in determining success or failure in rehabilitation efforts after disturbance.     

Methodologies for simulating impacts of climate change on crop production

Ecophysiological models are widely used to forecast potential impacts of climate change on future agricultural productivity and to examine options for adaptation by local stakeholders and policy makers. However, protocols followed in such assessments vary to such an extent that they constrain cross-study syntheses and increase the potential for bias in projected impacts. We reviewed 221 peer-reviewed papers that used crop simulation models to examine diverse aspects of how climate change might affect agricultural systems. Six subject areas were examined: target crops and regions; the crop model(s) used and their characteristics; sources and application of data on [CO₂] and climate; impact parameters evaluated; assessment of variability or risk; and adaptation strategies. Wheat, maize, soybean and rice were considered in approximately 170 papers. The USA (55 papers) and Europe (64 papers) were the dominant regions studied. The most frequent approach used to simulate response to CO₂ involved adjusting daily radiation use efficiency (RUE) and transpiration, precluding consideration of the interacting effects of CO₂, stomatal conductance and canopy temperature, which are expected to exacerbate effects of global warming. The assumed baseline [CO₂] typically corresponded to conditions 10-30 years earlier than the date the paper was accepted, exaggerating the relative impacts of increased [CO₂]. Due in part to the diverse scenarios for increases in greenhouse gas emissions, assumed future [CO₂] also varied greatly, further complicating comparisons among studies. Papers considering adaptation predominantly examined changes in planting dates and cultivars; only 20 papers tested different tillage practices or crop rotations. Risk was quantified in over half the papers, mainly in relation to variability in yield or effects of water deficits, but the limited consideration of other factors affecting risk beside climate change per se suggests that impacts of climate change were overestimated relative to background variability. A coordinated crop, climate and soil data resource would allow researchers to focus on underlying science. More extensive model intercomparison, facilitated by modular software, should strengthen the biological realism of predictions and clarify the limits of our ability to forecast agricultural impacts of climate change on crop production and associated food security as well as to evaluate potential for adaptation.     

Responses of time of anthesis and maturity to sowing dates and infrared warming in spring wheat

Reliable prediction of the potential impacts of global warming on agriculture requires accurate data on crop responses to elevated temperatures. Controlled environments can precisely regulate temperature but may impose unrealistic radiation, photoperiod and humidity regimes. Infrared warming with automatic control of temperature rise has shown potential for warming field plots above ambient temperatures, while avoiding such biases. In a field experiment conducted at Maricopa, AZ, we assessed the utility of a temperature free-air controlled enhancement (T-FACE) approach by comparing phenology of wheat from a series of six sowing date treatments using T-FACE and an additional nine sowing dates that exposed crops to an exceptionally wide range of air temperatures (<0 °C to >40 °C). The T-FACE treatments were intended to achieve a warming of +1.5 °C during the daytime and +3.0 °C at night; the achieved warming averaged +1.3 °C during daytime and +2.8 °C at night. T-FACE and sowing date treatments had large effects on phenology. A regression-based analysis of simulations with the CSM-CROPSIM-CERES model showed that effects of T-FACE on phenology were similar to what would be expected from equivalent changes in air temperature. However, systematic deviations from the expected 1-to-1 relation suggested that assumed cardinal temperatures for phenology should be revised. Based on the single cultivar and location, it appeared that the base temperature for emergence to anthesis should be reduced from 0 °C to −5 °C, whereas the base temperature for grain filling should be increased from 0 °C to 4 °C and the optimal temperature, from 30 °C to 34 °C. Both T-FACE and extreme sowing date treatments proved valuable for improving understanding of high temperature effects on plant processes, as required for accurate prediction of crop responses to elevated temperatures under climate change.     

Manganese (Mn2+)-dependent storage stabilization of Rhodotorula glutinis phenylalanine ammonia-lyase activity

Phenylalanine ammonia-lyase (PAL; E C 4.3.1.5) reverse reaction has been exploited for the commercial production of optically pure l-phenylalanine from trans-cinnamic acid. Optimal conditions for the growth and PAL activity of Rhodotorula glutinis cells and an improved method for the synthesis of l-phenylalanine have been reported. A major problem encountered during these studies was rapid loss of PAL activity during storage of the yeast cells, which were therefore unsuitable for long-term and repeated use. Enhancement of enzyme stability in the presence of various additives including polyhydric compounds and metal ions is described. Whole cells retained nearly 85% of the original enzyme activity for at least 12 weeks when a low concentration of Mn2+ (0.01%) was included in the storage buffer medium (50 mM Tris-HCl, pH 8.8). In contrast, <3.0% activity was present in the control within 4 weeks. Mn2+-dependent stabilization of PAL was also observed with an isolated enzyme preparation (73% retention in activity for 12 weeks) obtained by ultrasonication of R. glutinis whole cells. The data suggest that Mn2+ ions may be responsible for the specific stabilization of a more active conformation of the enzyme. In addition, enzyme stability as a function of temperature was studied, and the optimal temperature for maximal activity retention was 0-2 degrees C. The effects of various additives on the induction of PAL have also been examined. These results could have direct implications in studies on activity, inhibition, and reaction mechanism of this biotechnologically important enzyme.     

Alkylresorcinols in wheat varieties in the HEALTHGRAIN Diversity Screen

The contents of alkylresorcinols (AR) were analyzed in 131 winter wheats, 20 spring wheats, 10 durum wheats, 5 spelt wheats, and 10 early cultivated forms of wheat (5 diploid einkorn and 5 tetraploid emmer), which are part of the HEALTHGRAIN diversity screen. AR were analyzed by gas chromatography (GC), which provides both total contents and relative homologue compositions, as well as with a Fast Blue colorimetric method that provides only total contents but which is fast and easily screens a large number of samples. There was considerable variation in the total AR content analyzed with GC: winter wheat (220-652 microg/g of dm), spring wheat (254-537 microg/g of dm), durum wheat (194-531 microg/g of dm), spelt (490-741 microg/g of dm), einkorn (545-654 microg/g of dm), and emmer wheat (531-714 microg/g of dm). The relative AR homologue composition was different for different types of wheat, with a C17:0 to C21:0 ratio of 0.1 for winter, spring, and spelt wheats, 0.04 for einkorn and emmer wheat, and 0.01 for durum wheat. The total AR content analyzed with the Fast Blue method was lower than that analyzed with GC but there was a good correlation between the two methods (R(2) = 0.76).     

Phytochemicals and dietary fiber components in rye varieties in the HEALTHGRAIN Diversity Screen

Ten rye varieties grown in one location were analyzed for their contents of dietary fiber (arabinoxylan and beta-glucan) and phytochemicals (folate, tocols, phenolic acids, alkylresorcinols, and sterols). The varieties included old and modern varieties from five European countries. Significant differences were observed in the contents of all phytochemicals in whole grains and in the fiber contents in the flour and bran. The old French varieties Haute Loire and Queyras had high contents of most phytochemicals, whereas the Polish varieties Dankowskie-Zlote and Warko were relatively poor in phytochemicals. The varieties with a high content of folate tended to have low alkylresorcinol contents and vice versa. Furthermore, high contents of arabinoxylans were associated with high contents in tocols and sterols. The 10 selected rye samples comprising old populations and old and modern varieties from different ecological regions of Europe demonstrate high natural variation in their composition and show that landraces and old populations are useful genetic resources for plant breeding. The contents of single phytochemicals can likely be affected by breeding, and they may be adjusted by the right selection of genotype.     

Concurrent comparison of energy intake and expenditure among adults in Butajira District, Ethiopia

OBJECTIVE: To estimate and compare dietary energy intake (DEI) and total energy expenditure (TEE) among adults, using questionnaires. DESIGN: Comparative, cross-sectional study. SETTING: Community-based, at the demographic surveillance site (DSS) in Butajira District of Ethiopia. SUBJECTS: A total of 619 adults, 18-64 years of age, were randomly selected from among the urban and rural population of Butajira using the DSS sampling frame. Habitual dietary intake and physical activity were assessed using questionnaires. BMR was estimated using a regression equation, and TEE was calculated from BMR and the metabolic energy equivalent task (MET) and duration of reported activities. Physical activity level (PAL) was calculated as TEE/BMR, while food intake level (FIL) was calculated as DEI/BMR. The mean DEI:TEE ratio was used to evaluate reported DEI at the population level, while individual misreporters were identified by applying the Goldberg cut-off points at three levels of PAL. RESULTS: Based on the Goldberg method, 57% of the study participants were identified as acceptable reporters of DEI, among whom mean TEE was 8.21 (95% CI 8.01, 8.42) MJ (1963 (95% CI 1914, 2012) kcal), mean DEI was 8.13 (95% CI 7.93, 8.34) MJ (1944 (95% CI 1895, 1993) kcal) and mean DEI:TEE was 1.01 (95% CI 0.99, 1.04). CONCLUSION: The dietary history and physical activity questionnaires provide comparable estimates of mean energy intake and expenditure at a population level. Acceptable reporters have to be identified in order to obtain better estimates. Questionnaire-based estimates of energy intake should not be interpreted without an inherent system of comparison or validation.     

An examination of Campylobacter fetus subsp. fetus by restriction endonuclease analysis and serology

Restriction endonuclease analysis was used to examine 70 different strains of Campylobacter fetus subsp. fetus, which were isolated from aborted sheep foetuses. The strains could be divided into seven types based on the DNA fragment patterns obtained by electrophoresis after digestion with the enzyme BstEII. With one exception, digestion with the enzyme XhoI allowed the strains to be grouped identically to that for BstEII. Antisera were made against formalized whole cells representative of each of the seven different restriction types. Analysis of these sera by tube agglutination tests using whole cells revealed five different serogroups. Examination of the 70 strains with absorbed antisera demonstrated a complex relationship between the restriction type and the external antigens of C. fetus subsp. fetus.