Genetic diversity of rhizobia associated with indigenous legumes in different regions of Flanders (Belgium)

We investigated the diversity of rhizobia isolated from different indigenous legumes in Flanders (Belgium). A total of 3810 bacterial strains were analysed originating from 43 plant species. Based on rep-PCR clustering, 16S rRNA gene and recA gene sequence analysis, these isolates belonged to Bradyrhizobium, Ensifer (Sinorhizobium), Mesorhizobium and Rhizobium. Of the genera encountered, Rhizobium was the most abundant (62%) and especially the species Rhizobiumleguminosarum, followed by Ensifer (19%), Bradyrhizobium (14%) and finally Mesorhizobium (5%). For two rep-clusters only low similarity values with other genera were found for both the 16S rRNA and recA genes, suggesting that these may represent a new genus with close relationship to Rhodopseudomonas and Bradyrhizobium. Primers for the symbiotic genes nodC and nifH were optimized and a phylogenetic sequence analysis revealed the presence of different symbiovars including genistearum, glycinearum, loti, meliloti, officinalis, trifolii and viciae. Moreover, three new nodC types were assigned to strains originating from Ononis, Robinia and Wisteria, respectively. Discriminant and MANOVA analysis confirmed the correlation of symbiosis genes with certain bacterial genera and less with the host plant. Multiple symbiovars can be present within the same host plant, suggesting the promiscuity of these plants. Moreover, the ecoregion did not contribute to the separation of the bacterial endosymbionts. Our results reveal a large diversity of rhizobia associated with indigenous legumes in Flanders. Most of the legumes harboured more than one rhizobial endosymbiont in their root nodules indicating the importance of including sufficient isolates per plant in diversity studies.     

Control and detection of singlet-triplet mixing in a random nuclear field

We observed mixing between two-electron singlet and triplet states in a double quantum dot, caused by interactions with nuclear spins in the host semiconductor. This mixing was suppressed when we applied a small magnetic field or increased the interdot tunnel coupling and thereby the singlet-triplet splitting. Electron transport involving transitions between triplets and singlets in turn polarized the nuclei, resulting in marked bistabilities. We extract from the fluctuating nuclear field a limitation on the time-averaged spin coherence time T2* of 25 nanoseconds. Control of the electron-nuclear interaction will therefore be crucial for the coherent manipulation of individual electron spins.     

Comparative analysis of replication characteristics of BoHV-1 subtypes in bovine respiratory and genital mucosa explants: a phylogenetic enlightenment

ABSTRACT: In general, members of the Alphaherpesvirinae use the epithelium of the upper respiratory and/or genital tract as a preferential site for primary replication. Bovine herpesvirus type 1 (BoHV-1) may replicate at both sites and cause two major clinical entities designated as infectious bovine rhinotracheitis (IBR) and infectious pustular vulvovaginitis/balanoposthitis (IPV/IPB) in cattle. It has been hypothesized that subtype 1.1 invades preferentially the upper respiratory mucosa whereas subtype 1.2 favors replication at the peripheral genital tract. However, some studies are in contrast with this hypothesis. A thorough study of primary replication at both mucosae could elucidate whether or not different BoHV-1 subtypes show differences in mucosa tropism. We established bovine respiratory and genital organ cultures with emphasis on maintenance of tissue morphology and viability during in vitro culture. In a next step, bovine respiratory and genital mucosa explants of the same animals were inoculated with several BoHV-1 subtypes. A quantitative analysis of viral invasion in the mucosa was performed at 0 h, 24 h, 48 h and 72 h post inoculation (pi) by measuring plaque latitude and penetration depth underneath the basement membrane. All BoHV-1 subtypes exhibited a more profound invasion capacity in respiratory tissue compared to that in genital tissue at 24 h pi. However, at 24 h pi plaque latitude was found to be larger in genital tissue compared to respiratory tissue and this for all subtypes. These similar findings among the different subtypes take the edge off the belief of the existence of specific mucosa tropisms of different BoHV-1 subtypes.     

Long-term dynamics and population viability in one of the last populations of the endangered Spiranthes spiralis (Orchidaceae) in the Netherlands

During the last decades, most orchid species in much of Western Europe have suffered significant declines and the long-term survival of the remaining populations remains to a large extent uncertain. In particular, populations at range margins may be more prone to extinction than more central populations, as the former tend to be small and isolated, occur in ecologically marginal habitats and have a lower per-capita reproductive rate. In this study, we investigated the long-term dynamics and population viability of a population at the margin of its range of Spiranthes spiralis in the Netherlands. At present, only 2 out of 40 previously known populations persist. Individual plants were monitored for 24 years and their life span, flowering frequency and vegetative growth were determined. Individual plants showed large temporal variation in sexual and vegetative growth among years. The proportion of flowering plants varied from 0 (no plants were flowering) to 100 (all plants were flowering). Vegetative growth, on the other hand, increased when the number of individuals decreased. Dormancy was present, but occurred only in a few individuals. Using a non-structured population viability model, future prospects of this species were assessed. Calculation of extinction probabilities and estimated times to extinction using the diffusion approximation model showed that the species had a relatively high probability (79%) of surviving the next 20 years, whereas the median time to extinction was forty years. However, because 95% confidence intervals of the population growth included 1, we suggest that continued monitoring and additional genetic research are needed to assess the long-term viability of this species.     

The effects of urban retail greenery on consumer experience: Reviewing the evidence from a restorative perspective

Over the last three decades solid empirical evidence for the positive influence of greenery on human psychological and cognitive functioning has been steadily accruing. Based on this evidence, researchers and practitioners increasingly realize the importance of urban greening as a strategic activity to promote human wellbeing. Although commercial and retail activities constitute a significant and influential component of urban contexts, a concern is that the stakeholders involved (e.g. merchants) can sometimes be reluctant to integrate vegetation in commercial districts. This can be an important stumbling block for the process of urban greening. In this paper we introduce the concept of Biophilic Store Design (BSD) as the retail design strategy to consciously tap the beneficial effects of vegetation. The central aim of this paper is to demonstrate that the reluctance of certain retail stakeholders to integrate greening practices like BSD is unjustified. Two lines of evidence in support of this claim will be discussed. On the one hand, we sketch a conceptual framework which supports the view that BSD can have restorative effects for those implied in store environments. On the other hand, we review Wolf's multi-study research program on the effects of urban greening on consumer behavior, attitudes, and perceptions. These two lines of evidence show that commercial activities and urban greening are not to be considered as antagonistic but as mutually reinforcing practices.     

The possibility of positive selection for both F18(+)Escherichia coli and stress resistant pigs opens new perspectives for pig breeding

F18(+)Escherichia coli infections causing post-weaning diarrhoea and/or oedema disease are a major cause of economic losses in pig industry. To date, no preventive strategy can protect pigs from F18(+)E. coli infections. One of the most attractive approaches to eliminate F18(+)E. coli infections is the selection for pigs that are resistant to F18(+)E. coli infections. However, this strategy was not believed to be favourable because of reports of genetic association with the stress-susceptibility gene in the Swiss Landrace. To investigate this potential association more thoroughly, 131 randomly selected Belgian hybrid pigs were genotyped for both the F18(+)E. coli resistance alleles (FUT1(A)) and the stress-susceptibility alleles (RYR1(T)) and their association was investigated by determining the linkage disequilibrium. This linkage disequilibrium (LD=-0.0149) is close to zero and does not differ significantly from 0 (likelihood ratio test chi(1)(2)=1.123, P=0.29), demonstrating no association between the FUT1(A) and RYR1(T) alleles. Furthermore, only a small fraction (4.6%) of the Belgian pigs was found to be resistant to F18(+)E. coli infections. Our results suggest that selection for F18(+)E. coli resistant pigs might be an attractive approach to prevent pigs from F18(+)E. coli infections, unlike to what has previously been postulated.     

Investigation of ventricular pre-excitation electrocardiographic pattern in two horses: clinical presentation and potential causes

Two horses referred to the Unitat Equina, Fundació Hospital Clínic Veterinari, Universitat Autònoma de Barcelona, for unrelated clinical problems, and with no previous history of cardiac disease exhibited an intermittent ventricular pre-excitation electrocardiographic pattern during hospitalization. Both animals showed decreased plasma total and ionized magnesium concentrations, but no other relevant electrolyte disturbances were detected. Altered interventricular septal motion associated with ventricular pre-excitation beats (VPBs) was detected on M-mode echocardiography in both horses. The likely localization of an accessory pathway (AP) was identified in case 2 using pulsed-wave tissue Doppler imaging in the left anterior paraseptal location. Decreased frequency of the VPB was observed with long-term magnesium supplementation and restoration of plasma magnesium concentrations. The presence of ventricular pre-excitation electrocardiographic pattern was attributed to higher sensitivity of the AP to hypomagnesemia in both cases.     

Evaluation of the cold chain of fresh-cut endive from farmer to plate

In this study, the cold chain and its impact on food stuff microbiology was evaluated for fresh-cut endive. A survey was carried out to analyze endive temperature throughout the supply chain from producer, via processor and distributor to the restaurant. Data loggers accompanying the endive on its route provided a temperature profile of the endive. The effect of the outdoor temperature on initial cooling was evaluated and critical points regarding cold chain management in the supply chain were identified. Our experiments indicate that the cold chain is generally properly maintained. In parallel with temperature monitoring, indicator microorganisms were assessed at different points in the supply chain to examine the effects of endive temperature, temperature fluctuations, and the outdoor temperature on microbial food safety. Small temperature fluctuations in the supply chain had a small effect on the total level of aerobic mesophilic bacteria. However, at the best before-date, total coliforms and Enterobacteriaceae levels were significantly higher in endive samples subject to temperature fluctuations in the supply chain, compared to endive stored in optimal conditions. To our knowledge, this is the first study that combines microbiological analysis with the temperature profile of fresh-cut produce in a realistic food supply chain.     

Genetic analysis of production and feed efficiency traits in an Orlopp turkey line (Meleagris gallopavo)

1. Genetic parameters for production and feed efficiency traits in the Orlopp line of turkeys were estimated to determine breeding goals and future potential of the line in a long-term genetic improvement programme.

2. Body weight, egg production and fertility traits were recorded and feed conversion ratio (FCR) was assessed from 16–20 weeks of age.

3. Moderate heritabilities were found for feed intake and body weight gain (0.25 to 0.31). Average FCR was 3.14, with heritability of 0.10. Body weight, breast conformation score and egg production traits showed moderate heritabilities (0.22 to 0.52), while both fertility and hatch of fertile eggs were low (0.04 and 0.09, respectively).

4. Genetic correlations between breast confirmation score, 10- and 18-week body weights were moderate, 0.50 and 0.45, respectively. Average egg weight also showed moderate genetic correlations with 10- and 18-week body weights (0.59 and 0.42).