Information transduction capacity of noisy biochemical signaling networks

Molecular noise restricts the ability of an individual cell to resolve input signals of different strengths and gather information about the external environment. Transmitting information through complex signaling networks with redundancies can overcome this limitation. We developed an integrative theoretical and experimental framework, based on the formalism of information theory, to quantitatively predict and measure the amount of information transduced by molecular and cellular networks. Analyzing tumor necrosis factor (TNF) signaling revealed that individual TNF signaling pathways transduce information sufficient for accurate binary decisions, and an upstream bottleneck limits the information gained via multiple integrated pathways. Negative feedback to this bottleneck could both alleviate and enhance its limiting effect, despite decreasing noise. Bottlenecks likewise constrain information attained by networks signaling through multiple genes or cells.     

Resistance of rumen bacteria murein to bovine gastric lysozyme

Background

In many species of birds, pair bonded males and females precisely co-ordinate their vocalisations to form duets. Duetting behaviour, although still somewhat of an enigma, is thought to function primarily in territorial defence and mate guarding. We identify an additional function of duetting in an afrotropical bird, the tropical boubou (Laniarius aethiopicus), that uses one duet type as a postconflict display probably to advertise victory to other boubous.

Results

We simulated intrusions into boubou territories in the field in Ivory Coast, West Africa using playbacks of four different types of boubou duets to test the use of the presumptive acoustic victory display before, during and after playbacks. These staged encounters resulted in either retreat of the focal birds during playback or continued presence accompanied by vocal displays after playback had ceased. Losers of encounters never sung after retreating whereas 11 out of 18 pairs sung the presumptive victory duet after the encounter. Analysis revealed that the presumptive victory display was sung significantly more often after than before or during the playback treatment.

Conclusion

We conclude that, most likely, the investigated duet type is a postconflict victory display – a novel function of duets. Furthermore the duet is a rare example among birds of a context-specific song. The conspicuousness of the display suggests that it is directed not only to losers of an agonistic encounter but also to other pairs of birds in neighbouring territories.     

Induction of high affinity nitrate and ammonium uptake systems in wheat

Abstract

The ability of 7 day old wheat seedlings to take up nitrate or ammonium from hydroponic solution was measured. Seedlings were grown under fully aerated hydroponic conditions. The growth solution consisted of either 0.5 mM CaSO₄ alone or in combination with high nitrate (5 mM NO₃ ^‐ ), high ammonium (2 mM NH₄ ⁺) or modified 1/10 Hoaglands solution with nitrate N only (14 mM) or ammonium N only (2 mM). After washing the roots for one hour in CaSO₄, nitrate or ammonium uptake was measured with an ion selective electrode. Plants grown in high nitrate were unable to take up nitrate from a 0.1 mM external solution. Those grown in CaSO₄ were able to take up nitrate at the same external concentration (flux = 10.2 +/‐ 3.0 μmol nitrate/g dry wtlbh). The same result was seen for plants grown in high ammonium vs those grown in CaSO₄ (flux = 21.0 +/‐ 10.0 μmol/g dry wtlbh). Similar results were obtained when modified Hoagland's solution was substituted for the high N solutions. These data indicate that wheat roots possess both high and low affinity nitrate and ammonium uptake systems. The data further indicate that, for a given ion, the high and low affinity systems do not operate simultaneously under high N conditions. The high affinity system is switched off in the range of 1 mM for both ionic forms of N. Developmental studies show that the expression of the high affinity trait is reversible and may be induced (repressed) by conditioning for 24 h in low (high) N media. Plants grown in high N solutions showed efflux of the ion under assay conditions. Neither ion interfered with the induction/repression of the high affinity trait for the other under the conditions used in this study.     

Systemic lidocaine infusion as an analgesic for intraocular surgery in dogs: a pilot study

Objective To determine if systemic administration of lidocaine during intraocular surgery reduces post-operative ocular pain. Study design Randomized, masked, controlled experimental trial. Animals Twelve dogs weighing 15.5 ± 1.7 kg (mean ± SD) and aged 2.5 ± 0.6 years. Methods All dogs underwent a baseline ophthalmic examination and subjective pain score. Anesthesia consisted of acepromazine (0.1 mg kg⁻¹, IM), propofol (4–6 mg kg⁻¹, IV), and isoflurane in oxygen. There were three groups each receiving a bolus followed by an infusion (n = 4): saline (0.3 mL kg⁻¹ IV + 0.2 mL kg⁻¹hour⁻¹ IV); morphine (0.15 mg kg⁻¹ IV + 0.1 mg kg⁻¹hour⁻¹ IV); and lidocaine (1.0 mg kg⁻¹ IV + 0.025 mg kg⁻¹minute⁻¹ IV). All treatments began 15 minutes prior to starting of phacoemulsification and lens removal from the right eye. Pain scores were recorded at 0.5, 1, 2, 3, 4, 6, 8, 16, and 24 hours after t = 0 (extubation). Rescue morphine was administered (1.0 mg kg⁻¹ IM) if the subjective pain score ≥9 (maximum = 24), and the dog was excluded from further data analysis. Differences in pain scores and time-to-treatment failure (TTF) were analyzed using the Wilcoxon's rank sum test. Differences in incidence of treatment failure were analyzed using Fisher's exact test. Physiologic data were analyzed using repeated measures anova . Significance was defined as P < 0.05. Results Incidence of treatment failure was 100% in saline-treated dogs and 50% in morphine- or lidocaine-treated dogs. There was no difference in intraocular pressure, aqueous flare, cell count (or protein) between groups in the operated eye at any time following extubation. Conclusion and clinical relevance This pilot study suggests that intraoperative lidocaine may provide analgesic benefits similar to morphine for intraocular surgery in dogs, but more definitive research is needed. This model appears to be appropriate for pain assessment studies as the negative control group demonstrated 100% failure rate.     

Empirical move‐on rules to inform fishing strategies: a New England case study

Increasingly, fisheries are being managed under catch quotas that are often further allocated to specific permit holders or sectors. At the same time, serious consideration is being given to the effects of discards on the health of target and non‐target species. Some quota systems have incorporated discard reduction as an objective by counting discards (including unmarketable fish) against the overall quota. The potential effect of the introduction of a quota system that includes accountability for discards on the fishing strategies employed by fishermen is enormous. This is particularly true for multispecies fisheries where healthy and depleted stocks co‐exist; resulting in a trip's catch being applied to very large and very small stock quotas simultaneously. Under such a scenario, fishermen have a strong incentive to minimize (i) catch of low‐quota or ‘choke’ stocks, (ii) regulatory discards due to minimum size limits and (iii) catch partially consumed by predators. ‘Move‐on’ rules (i.e. event‐triggered, targeted, temporary closure of part of a fishery when a catch or bycatch threshold is reached) have been employed in a variety of fisheries. However, their efficacy has been limited by a lack of empirical analyses underpinning the rules. Here, we examine the utility of spatiotemporal autocorrelation analyses to inform ‘move‐on’ rules to assist a sector of the New England Multispecies Fishery to reduce discards and maximize profits. We find the use of empirical move‐on rules could reduce catch of juvenile and choke stocks between 27 and 33%, and depredation events between 41 and 54%.     

How to perform combined cutting balloon and high pressure balloon valvuloplasty for dogs with subaortic stenosis

Subvalvular aortic stenosis (SAS) is one of the most common congenital cardiac malformations in dogs. Unfortunately, the long term success rate and survival data following either open heart surgery or catheter based intervention has been disappointing in dogs with severe subaortic stenosis. Medical therapy is currently the only standard recommended treatment option. A cutting balloon dilation catheter has been used successfully for resistant coronary artery and peripheral pulmonary arterial stenoses in humans. This catheter is unique in that it has the ability to cut, or score, the stenotic region prior to balloon dilatation of the stenosis. The use of cutting balloon valvuloplasty combined with high pressure valvuloplasty for dogs with severe subaortic stenosis has recently been reported to be a safe and feasible alternative therapeutic option. The following report describes this technique, outlines the materials required, and provides some ‘tips’ for successful percutaneous subaortic balloon valvuloplasty.     

High levels of pollen dispersal detected through paternity analysis from a continuous Symphonia globulifera population in the Brazilian Amazon

In this study, six highly polymorphic microsatellite loci and a categorical paternity analysis approach were used to investigate the contemporary pollen gene flow in the neotropical tree species Symphonia globulifera. Data for this study were taken from a 500 ha experimental plot in a dense terra firme forest in the Eastern Brazilian Amazon and included the mapping and genotyping of 161 reproductive trees, representing more than 90% of all adult trees, and the collection of 748 open-pollinated seeds from 56 seed-trees over two field seasons (2002 and 2003). High levels of pollen immigration from outside of the study plot were detected in both sampled seed-years (≥49%) suggesting long distance pollen gene flow. Low levels of self-fertilization were also detected (≤2%). The analysis showed long distance pollen dispersal occurred within the study area in both 2002 (δ = 907 ± 652 m SD) and 2003 (δ = 963 ± 542 m SD). Patterns of pollen dispersal distance within the plot were also found to be shorter than the distances between potential male parents and seed-trees. This result indicates that the distance between trees does not explain the identified pollen dispersal pattern. Our results support the hypothesis that animal pollinated species occurring in low-density populations can disperse pollen in long distances, despite the very dense nature of the forest.