Thinking outside the patch: a multi-species comparison of conceptual models from real-world landscapes

Context

When modeling a species’ distribution, landscapes can alternatively be conceptualized following patch- or gradient-based approaches. However, choosing the most suitable conceptualization is difficult and methods for empirical validation are still lacking.

Objectives

To address the conditions under which a given conceptual model is more suitable, taking into account landscape context and species trait dependency effects. Patch- and gradient-based conceptualizations were built based on two structurally different landscapes: variegated and mosaic. We hypothesize that: (H1) gradient-based models better describe variegated landscapes while patch-based models perform better in mosaic landscapes; and (H2) gradient-based models will fit generalist species better while patch-based models will suit specialists better.

Methods

We modeled the distribution of eleven bird species in each landscape using each conceptualization. We determined the suitability of each conceptual model to fit statistical models by looking for cross-species responses and deviations from best models.

Results

We found no clear support for our hypotheses. Although patch-based models performed better in mosaic landscapes (H1), they also provided useful conceptualizations in variegated landscapes. However, when patches showed high heterogeneity, gradient-based approaches better fit specialist species (H2).

Conclusions

The suitability of a given conceptual model depends on the interaction between species habitat specialization, and the intrinsic spatial heterogeneity of the landscape and the ability of each conceptualization to capture it. Gradient-based models provide better information on resource allocation, while patch-based models offer a simplified perspective on landscape attributes. Future research should consider the nature of both species and landscapes in order to avoid bias from inadequate landscape conceptualizations.

     

Vegetative Compatibility and Mycotoxin Chemotypes among Fusarium graminearum (Gibberella zeae) Isolates from Wheat in Argentina

Gibberella zeae (anamorph Fusarium graminearum) is the main pathogen causing Fusarium head blight of wheat in Argentina. The objective of this study was to determine the vegetative compatibility groups (VCGs) and mycotoxin production (deoxynivalenol, nivalenol and 3-acetyl deoxynivalenol) by F. graminearum populations isolated from wheat in Argentina. VCGs were determined among 70 strains of F. graminearum isolated from three localities in Argentina, using nitrate non-utilizing (nit) mutants. Out of 367 nit mutants generated, 41% utilized both nitrite and hypoxanthine (nit1), 45% utilized hypoxanthine but not nitrite (nit3), 9% utilized nitrite but not hypoxanthine (NitM) and 5% utilized all the nitrogen sources (crn). The complementations were done by pairing the mutants on nitrate medium. Fifty-five different VCGs were identified and the overall VCG diversity (number of VCGs/number of isolates) averaged over the three locations was 0.78. Forty-eight strains were incompatible with all others, thus each of these strains constituted a unique VCG. Twenty-two strains were compatible with other isolates and were grouped in seven multimembers VCGs. Considering each population separately, the VCG diversity was 0.84, 0.81 and 1.0 for San Antonio de Areco, Alberti and Marcos Juarez, respectively. Toxin analysis revealed that of the 70 strains of F. graminearum tested, only 90% produced deoxynivalenol, 10% were able to produce deoxynivalenol and very low amounts of 3-acetyldeoxynivalenol. No isolate produced nivalenol. The results indicate a high degree of VCG diversity in the F. graminearum populations from wheat in Argentina. This diversity should be considered when screening wheat germplasm for Fusarium head blight resistance.     

Effects of cadmium on cork oak (Quercus suber L.) plants grown in hydroponics

Cork oak (Quercus suber L.) is an autochthonous tree species that is being used for reforestation in heavy-metal-contaminated areas in Spain. A hydroponics experiment was carried out to characterize the effects of Cd on several morphological and physiological parameters in this species, including shoot length, nutrient concentrations and allocation in different organs, leaf pigment concentrations, photosynthetic efficiency, root ferric chelate reductase (FCR) activity and organic acid concentrations in xylem sap. Four different Cd treatments were applied, adding Cd chelated with EDTA or as chloride salt at two different concentrations (10 and 50 μM Cd). After 1 month of Cd treatment, plant growth was significantly inhibited in all treatments. Results indicate that Cd accumulates in all organs 7- to 500-fold when compared with control plants. The highest Cd concentration was found in the 50 μM CdCl(2) treatment, which led to concentrations of ~30, 123 and 1153 μg Cd g(-1) dry weight in leaves, stems and roots, respectively. In the strongest Cd treatments the concentrations of P and Ca decreased in some plant parts, whereas the Mn leaf concentrations decreased with three of the four Cd treatments applied. The concentrations of chlorophyll and carotenoids on an area basis decreased, whereas the (zeaxanthin plus antheraxanthin)/(total violaxanthin cycle carotenoids) ratio and the non-photochemical quenching increased significantly in all Cd treatments. Cadmium treatments caused significant increases in the activity of the enzyme FCR in roots and in the concentrations of organic acids in xylem sap. Some of the physiological changes found support the fact that Cd induces a deficiency of Fe in cork oak, although the plant Fe concentrations were not reduced significantly. At higher concentrations the effects of Cd were more pronounced, and were more marked when Cd was in the free ion form than when present in the form of Cd-EDTA.     

Modeling of tomato fruits into nine shape categories using elliptic fourier shape modeling and Bayesian classification of contour morphometric data

Classification and characterization of the shape of plant organs are important tools for plant biologists, breeders and growers. Here we use boundary measurements, i.e. contour morphometric data, of scanned tomato fruits in conjunction with elliptic Fourier shape modeling and Bayesian classification techniques to find the optimum number of shape categories. Our findings show that there are nine computationally and visually distinct tomato shape categories: ellipsoid, flat, heart, long, long rectangular, rectangular, round, obovoid, and oxheart. Analyses of fruits from a diverse set of tomato accessions demonstrate that some varieties carry fruits that conform to predominantly one shape category while others carry fruits that conform to multiple shape categories. In particular the categories oxheart and long rectangular feature fruit that tend to equivalently fit several categories of shape, while the flat and obovoid categories contain fruit that consistently conform exclusively to a single category. The findings show that elliptic Fourier shape modeling and Bayesian classification provide an excellent tool for further in depth analyses of fruit shape variation that may occur across varieties and/or result from growth under different environmental conditions.     

INFLUENCE OF SODIUM CHLORIDE AND CALCIUM FOLIAR SPRAY ON HYDROPONICALLY GROWN PARSLEY IN NUTRIENT FILM TECHNIQUE SYSTEM

The effects of salinity [30 or 90 mM sodium chloride (NaCl)] and calcium (Ca) foliar application on plant growth were investigated in hydroponically-grown parsley (Petroselinum crispum Mill). Increasing salinity reduced fresh weight and leaf number. Calcium alleviated the negative impacts of 30 mM NaCl on plant biomass and leaf fresh weight but not in case of 90 mM. Plant height, leaf and root dry weight and root length did not differ among treatments. Total phenols increased with calcium application, chlorophyll b reduced by salinity, while total carotenoids increased with salinity and/or Ca application. Salinity reduced nutrient uptake [nitrate (NO₃), potassium (K), phosphorus (P) and Ca] and elemental content in leaves and roots. Calcium application reduced P but increased Ca content in plant tissues. Increments of Na uptake in nutrient solution resulted in higher Na content in leaves and roots regardless Ca application. These findings suggest that calcium treatment may alleviate the negative impacts of salinity.     

Antimicrobial Activity of the Marine Alkaloids,Clathrodin and Oroidin,and Their Synthetic Analogues

Marine organisms produce secondary metabolites that may be valuable for the development of novel drug leads as such and can also provide structural scaffolds for the design and synthesis of novel bioactive compounds. The marine alkaloids, clathrodin and oroidin, which were originally isolated from sponges of the genus, Agelas, were prepared and evaluated for their antimicrobial activity against three bacterial strains (Enterococcus faecalis, Staphylococcus aureus and Escherichia coli) and one fungal strain (Candida albicans), and oroidin was found to possess promising Gram-positive antibacterial activity. Using oroidin as a scaffold, 34 new analogues were designed, prepared and screened for their antimicrobial properties. Of these compounds, 12 exhibited >80% inhibition of the growth of at least one microorganism at a concentration of 50 µM. The most active derivative was found to be 4-phenyl-2-aminoimidazole 6h, which exhibited MIC₉₀ (minimum inhibitory concentration) values of 12.5 µM against the Gram-positive bacteria and 50 µM against E. coli. The selectivity index between S. aureus and mammalian cells, which is important to consider in the evaluation of a compound’s potential as an antimicrobial lead, was found to be 2.9 for compound 6h.